PDB Short entry for 5Q1D HEADER TRANSCRIPTION 31-MAY-17 5Q1D TITLE LIGAND BINDING TO FARNESOID-X-RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COACTIVATOR PEPTIDE SRC-1 HD3; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 744-757; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS D3R, FXR, DOCKING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,J.BENZ,D.BURGER,R.THOMA,A.RUF,C.JOSEPH,B.KUHN,C.SHAO, AUTHOR 2 H.YANG,S.K.BURLEY REVDAT 7 17-NOV-21 5Q1D 1 REMARK REVDAT 6 10-FEB-21 5Q1D 1 AUTHOR JRNL REVDAT 5 21-FEB-18 5Q1D 1 REMARK REVDAT 4 31-JAN-18 5Q1D 1 JRNL REVDAT 3 20-DEC-17 5Q1D 1 JRNL REVDAT 2 19-JUL-17 5Q1D 1 AUTHOR JRNL REVDAT 1 05-JUL-17 5Q1D 0 JRNL AUTH Z.GAIEB,S.LIU,S.GATHIAKA,M.CHIU,H.YANG,C.SHAO,V.A.FEHER, JRNL AUTH 2 W.P.WALTERS,B.KUHN,M.G.RUDOLPH,S.K.BURLEY,M.K.GILSON, JRNL AUTH 3 R.E.AMARO JRNL TITL D3R GRAND CHALLENGE 2: BLIND PREDICTION OF PROTEIN-LIGAND JRNL TITL 2 POSES, AFFINITY RANKINGS, AND RELATIVE BINDING FREE JRNL TITL 3 ENERGIES. JRNL REF J. COMPUT. AIDED MOL. DES. V. 32 1 2018 JRNL REFN ESSN 1573-4951 JRNL PMID 29204945 JRNL DOI 10.1007/S10822-017-0088-4 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 46940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.44 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3336 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4941 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3165 REMARK 3 BIN R VALUE (WORKING SET) : 0.4939 REMARK 3 BIN FREE R VALUE : 0.4982 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.09640 REMARK 3 B22 (A**2) : -2.14420 REMARK 3 B33 (A**2) : -2.95220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.159 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.142 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4141 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5601 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1495 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 577 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4141 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 531 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5045 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.20 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.7727 20.6859 -6.4525 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: -0.1065 REMARK 3 T33: -0.1116 T12: -0.0367 REMARK 3 T13: 0.0407 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.5148 L22: 2.1245 REMARK 3 L33: 5.0301 L12: 0.1056 REMARK 3 L13: 0.8672 L23: 0.6256 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: -0.0521 S13: 0.0763 REMARK 3 S21: -0.0936 S22: -0.0067 S23: 0.0621 REMARK 3 S31: -0.3221 S32: -0.0363 S33: 0.0946 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.7102 1.6522 -5.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.1659 T22: -0.0819 REMARK 3 T33: -0.0117 T12: -0.0228 REMARK 3 T13: -0.0319 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.8274 L22: 0.9973 REMARK 3 L33: 0.5835 L12: -0.6912 REMARK 3 L13: -0.5352 L23: 0.6940 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0032 S13: -0.0060 REMARK 3 S21: -0.0333 S22: 0.0308 S23: -0.0578 REMARK 3 S31: 0.0499 S32: 0.0565 S33: -0.0405 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.9005 53.2673 34.7485 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0247 REMARK 3 T33: -0.1507 T12: 0.0719 REMARK 3 T13: 0.0199 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.4423 L22: 2.0524 REMARK 3 L33: 2.2396 L12: -0.5462 REMARK 3 L13: -0.3515 L23: 0.2699 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.1563 S13: -0.0640 REMARK 3 S21: -0.0015 S22: -0.0520 S23: 0.0729 REMARK 3 S31: -0.0036 S32: 0.0583 S33: 0.0802 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Q1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1001401375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.430 REMARK 200 R MERGE (I) : 0.09040 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.21 REMARK 200 R MERGE FOR SHELL (I) : 0.84290 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA CHLORIDE, 0.1 M BIS-TRIS PH REMARK 280 6.5, 25% W/V PEG 3350, EVAPORATION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.22000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.22000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.22000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.26500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.22000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.26500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 HIS A 246 REMARK 465 LYS B 755 REMARK 465 ASP B 756 REMARK 465 GLU B 757 REMARK 465 GLY C 244 REMARK 465 SER C 245 REMARK 465 HIS C 246 REMARK 465 LYS D 744 REMARK 465 ASP D 745 REMARK 465 GLU D 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 744 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 395 48.06 -89.53 REMARK 500 LEU C 395 48.49 -91.35 REMARK 500 GLN C 427 73.19 -150.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 780 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 781 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 782 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 783 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 784 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 785 DISTANCE = 10.35 ANGSTROMS REMARK 525 HOH A 786 DISTANCE = 10.54 ANGSTROMS REMARK 525 HOH A 787 DISTANCE = 10.58 ANGSTROMS REMARK 525 HOH C 767 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C 768 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH C 769 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH C 770 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH C 771 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH C 772 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C 773 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH C 774 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH C 775 DISTANCE = 10.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ND A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ND C 501 DBREF 5Q1D A 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1D B 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q1D C 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1D D 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 SEQADV 5Q1D GLY A 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D SER A 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D HIS A 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D MET A 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D ALA A 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1D ALA A 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q1D GLY C 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D SER C 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D HIS C 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D MET C 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1D ALA C 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1D ALA C 354 UNP Q96RI1 GLU 364 CONFLICT SEQRES 1 A 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 A 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 A 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 A 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 A 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 A 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 A 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 A 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 A 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 A 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 A 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 A 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 A 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 A 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 A 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 A 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 A 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 A 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 B 14 GLU SEQRES 1 C 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 C 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 C 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 C 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 C 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 C 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 C 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 C 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 C 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 C 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 C 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 C 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 C 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 C 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 C 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 C 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 C 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 C 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 D 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 D 14 GLU HET 9ND A 501 34 HET 9ND C 501 34 HETNAM 9ND (2S)-2-[2-(4-CHLOROPHENYL)-5,6-DIFLUORO-1H- HETNAM 2 9ND BENZIMIDAZOL-1-YL]-2-CYCLOHEXYL-N-PHENYLACETAMIDE FORMUL 5 9ND 2(C27 H24 CL F2 N3 O) FORMUL 7 HOH *387(H2 O) HELIX 1 AA1 THR A 250 ASN A 265 1 16 HELIX 2 AA2 MET A 269 GLU A 280 1 12 HELIX 3 AA3 SER A 283 LEU A 309 1 27 HELIX 4 AA4 GLY A 311 LEU A 315 5 5 HELIX 5 AA5 ASP A 316 ASN A 341 1 26 HELIX 6 AA6 GLY A 347 ASN A 358 1 12 HELIX 7 AA7 SER A 362 LEU A 379 1 18 HELIX 8 AA8 THR A 382 LEU A 395 1 14 HELIX 9 AA9 ASP A 404 GLN A 427 1 24 HELIX 10 AB1 GLN A 432 SER A 457 1 26 HELIX 11 AB2 THR A 466 TRP A 473 1 8 HELIX 12 AB3 HIS B 746 ASP B 754 1 9 HELIX 13 AB4 THR C 250 ASN C 265 1 16 HELIX 14 AB5 MET C 269 GLU C 280 1 12 HELIX 15 AB6 SER C 283 LEU C 309 1 27 HELIX 16 AB7 GLY C 311 LEU C 315 5 5 HELIX 17 AB8 ASP C 316 ASN C 341 1 26 HELIX 18 AB9 GLY C 347 ASN C 358 1 12 HELIX 19 AC1 SER C 362 LEU C 379 1 18 HELIX 20 AC2 THR C 382 LEU C 395 1 14 HELIX 21 AC3 ASP C 404 GLN C 427 1 24 HELIX 22 AC4 GLN C 432 HIS C 450 1 19 HELIX 23 AC5 HIS C 450 SER C 457 1 8 HELIX 24 AC6 THR C 466 TRP C 473 1 8 HELIX 25 AC7 GLN D 747 LYS D 755 1 9 SITE 1 AC1 14 ILE A 273 ILE A 277 ASN A 287 LEU A 291 SITE 2 AC1 14 MET A 294 HIS A 298 MET A 332 SER A 336 SITE 3 AC1 14 ILE A 339 PHE A 340 LEU A 352 ILE A 356 SITE 4 AC1 14 MET A 369 TYR A 373 SITE 1 AC2 15 ILE C 273 THR C 274 ILE C 277 ASN C 287 SITE 2 AC2 15 MET C 294 HIS C 298 MET C 332 PHE C 333 SITE 3 AC2 15 SER C 336 ILE C 339 PHE C 340 LEU C 352 SITE 4 AC2 15 ILE C 356 MET C 369 TYR C 373 CRYST1 72.440 84.530 190.540 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013805 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005248 0.00000