PDB Short entry for 5R51 HEADER HYDROLASE 28-FEB-20 5R51 TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF HUMAN NUDT22 TITLE 2 IN COMPLEX WITH N14003A COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE NUDT22; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UGPPASE,NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 22, COMPND 5 NUDIX MOTIF 22; COMPND 6 EC: 3.6.1.45; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT22, PP11246; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, NUDIX DOMAIN, KEYWDS 2 XCHEMEXPLORER, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 22, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DIAZ-SAEZ,R.TALON,T.KROJER,N.A.BURGESS-BROWN,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,F.VON DELFT,K.V.M.HUBER REVDAT 2 06-MAR-24 5R51 1 REMARK REVDAT 1 01-JUL-20 5R51 0 JRNL AUTH L.DIAZ-SAEZ,R.TALON,T.KROJER,N.A.BURGESS-BROWN, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON DELFT,K.V.M.HUBER JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 29819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1690 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : -2.91000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2664 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2261 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3459 ; 1.621 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5248 ; 1.339 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;35.153 ;22.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;13.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2984 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 2.154 ; 2.601 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1342 ; 2.157 ; 2.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 2.949 ; 3.885 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5R51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5LF9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.3M REMARK 280 SODIUM/POTASSIUM PHOSPHATE, 15% PEG SMEAR HIGH, 20% ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.82600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.82600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 161 REMARK 465 LEU A 162 REMARK 465 CYS A 163 REMARK 465 PRO A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 SER A 167 REMARK 465 PRO A 168 REMARK 465 GLN A 169 REMARK 465 HIS A 170 REMARK 465 GLN A 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 74 NE CZ NH1 NH2 REMARK 470 GLN A 142 CD OE1 NE2 REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 529 O HOH A 546 1.07 REMARK 500 OE1 GLU A 255 O HOH A 501 1.84 REMARK 500 NH1 ARG A 88 O HOH A 502 1.86 REMARK 500 OG SER A 274 O DMS A 405 1.93 REMARK 500 O GLY A 154 N1 RU4 A 401 2.08 REMARK 500 OD2 ASP A 192 O HOH A 503 2.14 REMARK 500 OE2 GLU A 145 NH2 ARG A 218 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 561 O HOH A 614 3645 1.19 REMARK 500 O HOH A 509 O HOH A 604 3645 1.25 REMARK 500 O HOH A 515 O HOH A 527 3645 1.69 REMARK 500 O HOH A 510 O HOH A 644 4565 1.96 REMARK 500 O HOH A 517 O HOH A 606 3645 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 2.38 -67.69 REMARK 500 THR A 93 -81.94 -129.56 REMARK 500 ASP A 132 41.43 80.79 REMARK 500 SER A 288 74.67 50.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 660 DISTANCE = 7.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RU4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 405 DBREF 5R51 A 1 303 UNP Q9BRQ3 NUD22_HUMAN 1 303 SEQADV 5R51 SER A 0 UNP Q9BRQ3 EXPRESSION TAG SEQADV 5R51 ARG A 260 UNP Q9BRQ3 GLN 260 CONFLICT SEQADV 5R51 PRO A 263 UNP Q9BRQ3 LEU 263 CONFLICT SEQRES 1 A 304 SER MET ASP PRO GLU VAL THR LEU LEU LEU GLN CYS PRO SEQRES 2 A 304 GLY GLY GLY LEU PRO GLN GLU GLN ILE GLN ALA GLU LEU SEQRES 3 A 304 SER PRO ALA HIS ASP ARG ARG PRO LEU PRO GLY GLY ASP SEQRES 4 A 304 GLU ALA ILE THR ALA ILE TRP GLU THR ARG LEU LYS ALA SEQRES 5 A 304 GLN PRO TRP LEU PHE ASP ALA PRO LYS PHE ARG LEU HIS SEQRES 6 A 304 SER ALA THR LEU ALA PRO ILE GLY SER ARG GLY PRO GLN SEQRES 7 A 304 LEU LEU LEU ARG LEU GLY LEU THR SER TYR ARG ASP PHE SEQRES 8 A 304 LEU GLY THR ASN TRP SER SER SER ALA ALA TRP LEU ARG SEQRES 9 A 304 GLN GLN GLY ALA THR ASP TRP GLY ASP THR GLN ALA TYR SEQRES 10 A 304 LEU ALA ASP PRO LEU GLY VAL GLY ALA ALA LEU ALA THR SEQRES 11 A 304 ALA ASP ASP PHE LEU VAL PHE LEU ARG ARG SER ARG GLN SEQRES 12 A 304 VAL ALA GLU ALA PRO GLY LEU VAL ASP VAL PRO GLY GLY SEQRES 13 A 304 HIS PRO GLU PRO GLN ALA LEU CYS PRO GLY GLY SER PRO SEQRES 14 A 304 GLN HIS GLN ASP LEU ALA GLY GLN LEU VAL VAL HIS GLU SEQRES 15 A 304 LEU PHE SER SER VAL LEU GLN GLU ILE CYS ASP GLU VAL SEQRES 16 A 304 ASN LEU PRO LEU LEU THR LEU SER GLN PRO LEU LEU LEU SEQRES 17 A 304 GLY ILE ALA ARG ASN GLU THR SER ALA GLY ARG ALA SER SEQRES 18 A 304 ALA GLU PHE TYR VAL GLN CYS SER LEU THR SER GLU GLN SEQRES 19 A 304 VAL ARG LYS HIS TYR LEU SER GLY GLY PRO GLU ALA HIS SEQRES 20 A 304 GLU SER THR GLY ILE PHE PHE VAL GLU THR GLN ASN VAL SEQRES 21 A 304 ARG ARG LEU PRO GLU THR GLU MET TRP ALA GLU LEU CYS SEQRES 22 A 304 PRO SER ALA LYS GLY ALA ILE ILE LEU TYR ASN ARG VAL SEQRES 23 A 304 GLN GLY SER PRO THR GLY ALA ALA LEU GLY SER PRO ALA SEQRES 24 A 304 LEU LEU PRO PRO LEU HET RU4 A 401 17 HET DMS A 402 4 HET DMS A 403 4 HET DMS A 404 4 HET DMS A 405 4 HETNAM RU4 4-(1,2,3-THIADIAZOL-4-YL)PHENYL ETHYLCARBAMATE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 RU4 C11 H11 N3 O2 S FORMUL 3 DMS 4(C2 H6 O S) FORMUL 7 HOH *160(H2 O) HELIX 1 AA1 PRO A 17 GLU A 19 5 3 HELIX 2 AA2 PRO A 27 ASP A 30 5 4 HELIX 3 AA3 ASP A 38 LYS A 50 1 13 HELIX 4 AA4 TYR A 87 THR A 93 1 7 HELIX 5 AA5 SER A 98 GLY A 111 1 14 HELIX 6 AA6 ALA A 174 ASN A 195 1 22 HELIX 7 AA7 PRO A 197 LEU A 201 5 5 HELIX 8 AA8 THR A 214 ALA A 216 5 3 HELIX 9 AA9 THR A 230 SER A 240 1 11 HELIX 10 AB1 GLY A 241 HIS A 246 5 6 HELIX 11 AB2 THR A 256 ARG A 260 1 5 HELIX 12 AB3 ARG A 261 THR A 265 5 5 HELIX 13 AB4 MET A 267 LEU A 271 5 5 HELIX 14 AB5 CYS A 272 GLN A 286 1 15 HELIX 15 AB6 GLY A 291 SER A 296 1 6 SHEET 1 AA1 5 VAL A 5 GLN A 10 0 SHEET 2 AA1 5 LEU A 205 ASN A 212 -1 O ARG A 211 N THR A 6 SHEET 3 AA1 5 ALA A 219 GLN A 226 -1 O SER A 220 N ALA A 210 SHEET 4 AA1 5 GLY A 122 ALA A 128 1 N ALA A 126 O PHE A 223 SHEET 5 AA1 5 GLY A 154 GLY A 155 -1 O GLY A 155 N VAL A 123 SHEET 1 AA2 3 ILE A 21 LEU A 25 0 SHEET 2 AA2 3 LEU A 78 SER A 86 1 O LEU A 78 N GLN A 22 SHEET 3 AA2 3 PRO A 59 LEU A 68 -1 N SER A 65 O ARG A 81 SHEET 1 AA3 3 VAL A 150 ASP A 151 0 SHEET 2 AA3 3 PHE A 133 ARG A 138 -1 N LEU A 137 O ASP A 151 SHEET 3 AA3 3 GLY A 250 GLU A 255 -1 O PHE A 252 N PHE A 136 SITE 1 AC1 7 ARG A 139 SER A 140 GLY A 154 GLY A 155 SITE 2 AC1 7 GLU A 189 GLU A 193 GLU A 247 SITE 1 AC2 3 ARG A 141 THR A 249 HOH A 545 SITE 1 AC3 4 LEU A 187 LEU A 198 LEU A 201 GLN A 203 SITE 1 AC4 5 THR A 108 ASP A 109 PRO A 243 HIS A 246 SITE 2 AC4 5 THR A 249 SITE 1 AC5 7 GLY A 124 ASP A 151 VAL A 152 GLY A 154 SITE 2 AC5 7 GLU A 222 SER A 274 HOH A 627 CRYST1 49.652 52.311 101.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009819 0.00000