PDB Short entry for 5SXG HEADER HYDROLASE 09-AUG-16 5SXG TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 5 EC: 3.5.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 3 04-OCT-23 5SXG 1 REMARK LINK REVDAT 2 25-DEC-19 5SXG 1 REMARK REVDAT 1 27-DEC-17 5SXG 0 JRNL AUTH K.SHI,O.DEMIR,M.A.CARPENTER,J.WAGNER,K.KURAHASHI,R.S.HARRIS, JRNL AUTH 2 R.E.AMARO,H.AIHARA JRNL TITL CONFORMATIONAL SWITCH REGULATES THE DNA CYTOSINE DEAMINASE JRNL TITL 2 ACTIVITY OF HUMAN APOBEC3B. JRNL REF SCI REP V. 7 17415 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29234087 JRNL DOI 10.1038/S41598-017-17694-3 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2499 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4877 - 4.0133 1.00 2747 139 0.1536 0.1726 REMARK 3 2 4.0133 - 3.1860 1.00 2693 129 0.1427 0.1843 REMARK 3 3 3.1860 - 2.7834 1.00 2666 143 0.1704 0.2102 REMARK 3 4 2.7834 - 2.5290 1.00 2696 138 0.1792 0.2105 REMARK 3 5 2.5290 - 2.3478 1.00 2660 115 0.1870 0.2466 REMARK 3 6 2.3478 - 2.2094 1.00 2647 146 0.2018 0.2339 REMARK 3 7 2.2094 - 2.0987 1.00 2647 136 0.2161 0.2439 REMARK 3 8 2.0987 - 2.0074 1.00 2651 130 0.2361 0.2768 REMARK 3 9 2.0074 - 1.9301 0.99 2596 141 0.2710 0.2852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3001 REMARK 3 ANGLE : 0.670 4054 REMARK 3 CHIRALITY : 0.047 410 REMARK 3 PLANARITY : 0.004 526 REMARK 3 DIHEDRAL : 18.262 1757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2667 -0.0243 -3.7543 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1646 REMARK 3 T33: 0.2202 T12: -0.0170 REMARK 3 T13: 0.0405 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0715 L22: 0.0574 REMARK 3 L33: 0.1388 L12: -0.0568 REMARK 3 L13: -0.0217 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: 0.0013 S13: -0.1085 REMARK 3 S21: 0.0601 S22: 0.0899 S23: 0.1322 REMARK 3 S31: -0.0570 S32: -0.0528 S33: 0.0099 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8697 3.2640 4.6841 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.2088 REMARK 3 T33: 0.1839 T12: 0.0020 REMARK 3 T13: 0.0132 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.1716 L22: 0.2349 REMARK 3 L33: 0.3722 L12: 0.1086 REMARK 3 L13: 0.1874 L23: 0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.1012 S13: -0.0066 REMARK 3 S21: 0.1017 S22: 0.1075 S23: -0.1354 REMARK 3 S31: -0.0116 S32: -0.1242 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5617 1.5631 -1.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1945 REMARK 3 T33: 0.2345 T12: -0.0023 REMARK 3 T13: 0.0059 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.1846 L22: 0.2015 REMARK 3 L33: 0.2199 L12: 0.0512 REMARK 3 L13: 0.1601 L23: -0.0974 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.0010 S13: -0.0353 REMARK 3 S21: -0.0737 S22: 0.1450 S23: 0.0100 REMARK 3 S31: -0.0152 S32: 0.0330 S33: 0.0147 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0960 7.2859 -2.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1415 REMARK 3 T33: 0.2390 T12: -0.0242 REMARK 3 T13: 0.0105 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 0.2163 REMARK 3 L33: 0.2979 L12: 0.2312 REMARK 3 L13: 0.1063 L23: 0.1511 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: 0.1052 S13: -0.0476 REMARK 3 S21: -0.0715 S22: 0.0886 S23: -0.1169 REMARK 3 S31: 0.0141 S32: -0.0757 S33: -0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1293 7.0803 9.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1696 REMARK 3 T33: 0.1869 T12: -0.0010 REMARK 3 T13: -0.0396 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.5229 L22: 0.1092 REMARK 3 L33: 0.3411 L12: -0.1980 REMARK 3 L13: 0.4107 L23: -0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: 0.0496 S13: -0.1061 REMARK 3 S21: 0.0981 S22: 0.0588 S23: -0.1157 REMARK 3 S31: -0.0841 S32: -0.0389 S33: -0.0296 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2907 12.9378 12.8922 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.1579 REMARK 3 T33: 0.2112 T12: -0.0048 REMARK 3 T13: -0.0584 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1435 L22: 0.0694 REMARK 3 L33: 0.1534 L12: 0.0009 REMARK 3 L13: 0.0009 L23: 0.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: -0.0534 S13: -0.0819 REMARK 3 S21: 0.0487 S22: 0.0246 S23: -0.1809 REMARK 3 S31: -0.1131 S32: -0.0527 S33: -0.0018 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9788 8.1862 -4.2462 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1783 REMARK 3 T33: 0.1770 T12: 0.0196 REMARK 3 T13: -0.0255 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.2315 L22: 0.1481 REMARK 3 L33: 0.0374 L12: -0.1874 REMARK 3 L13: -0.0957 L23: 0.0738 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.0034 S13: -0.1367 REMARK 3 S21: -0.0672 S22: -0.0539 S23: 0.0003 REMARK 3 S31: -0.0777 S32: -0.0236 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4619 15.3092 13.8861 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.2112 REMARK 3 T33: 0.1515 T12: 0.0470 REMARK 3 T13: -0.0297 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.0771 L22: 0.2825 REMARK 3 L33: 0.1532 L12: 0.1268 REMARK 3 L13: -0.0777 L23: -0.1859 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.1058 S13: 0.0413 REMARK 3 S21: 0.1187 S22: 0.0186 S23: 0.2086 REMARK 3 S31: -0.1939 S32: 0.0782 S33: -0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9763 -6.0490 40.9383 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.2012 REMARK 3 T33: 0.1869 T12: 0.0099 REMARK 3 T13: 0.0271 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.0016 L22: 0.0746 REMARK 3 L33: 0.0535 L12: 0.0071 REMARK 3 L13: -0.0115 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: 0.0672 S13: 0.0252 REMARK 3 S21: 0.0452 S22: -0.1123 S23: -0.0376 REMARK 3 S31: 0.1081 S32: 0.0904 S33: 0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0960 -4.0626 37.5615 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1522 REMARK 3 T33: 0.1443 T12: 0.0098 REMARK 3 T13: 0.0355 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.7169 L22: 0.7866 REMARK 3 L33: 0.5066 L12: -0.4748 REMARK 3 L13: 0.4045 L23: -0.4092 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: -0.1079 S13: -0.0549 REMARK 3 S21: -0.0451 S22: -0.0241 S23: 0.0597 REMARK 3 S31: 0.0385 S32: -0.0846 S33: 0.2967 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 266 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1436 1.8376 36.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2591 REMARK 3 T33: 0.2042 T12: 0.0709 REMARK 3 T13: 0.0439 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.6909 L22: 0.2389 REMARK 3 L33: 0.5450 L12: 0.3300 REMARK 3 L13: 0.3701 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.0044 S13: -0.0352 REMARK 3 S21: 0.0435 S22: 0.1332 S23: 0.1947 REMARK 3 S31: -0.1845 S32: -0.1565 S33: 0.1393 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5859 7.0351 37.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.3055 REMARK 3 T33: 0.1430 T12: 0.1072 REMARK 3 T13: 0.0307 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.8489 L22: 0.8038 REMARK 3 L33: 0.1309 L12: 0.4217 REMARK 3 L13: 0.1763 L23: 0.3207 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: -0.2812 S13: -0.0546 REMARK 3 S21: 0.2217 S22: 0.2372 S23: 0.1651 REMARK 3 S31: -0.1125 S32: -0.2382 S33: 0.2225 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8257 4.5083 30.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.2135 REMARK 3 T33: 0.1585 T12: 0.0310 REMARK 3 T13: -0.0017 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.1226 L22: 1.0082 REMARK 3 L33: 0.3219 L12: 0.0831 REMARK 3 L13: 0.1764 L23: -0.4261 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: -0.0005 S13: 0.0109 REMARK 3 S21: -0.0096 S22: -0.1600 S23: 0.0189 REMARK 3 S31: -0.0082 S32: -0.0104 S33: -0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 ASP A 224 REMARK 465 ASN A 225 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 LYS A 230 REMARK 465 MET A 231 REMARK 465 SER B 186 REMARK 465 GLU B 187 REMARK 465 ILE B 188 REMARK 465 LEU B 189 REMARK 465 LEU B 223 REMARK 465 ASP B 224 REMARK 465 ASN B 225 REMARK 465 GLY B 226 REMARK 465 THR B 227 REMARK 465 SER B 228 REMARK 465 VAL B 229 REMARK 465 LYS B 230 REMARK 465 MET B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 252 OD2 ASP B 260 1.55 REMARK 500 HH TYR A 191 O HOH A 506 1.55 REMARK 500 O HOH A 623 O HOH A 635 1.93 REMARK 500 OE2 GLU A 364 O HOH A 501 2.01 REMARK 500 O HOH A 597 O HOH A 618 2.05 REMARK 500 NE2 GLN B 298 O HOH B 501 2.06 REMARK 500 O HOH A 599 O HOH A 613 2.08 REMARK 500 O HOH A 506 O HOH A 579 2.09 REMARK 500 O HOH A 622 O HOH A 630 2.10 REMARK 500 OE1 GLU A 321 O HOH A 502 2.12 REMARK 500 O HOH A 600 O HOH A 616 2.13 REMARK 500 O HOH A 634 O HOH A 643 2.13 REMARK 500 O3 PDO A 402 O HOH A 503 2.15 REMARK 500 NH2 ARG A 212 O HOH A 504 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR A 319 OE1 GLU B 364 1455 1.55 REMARK 500 O HOH A 522 O HOH A 607 2545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 212 48.48 -85.11 REMARK 500 GLN B 233 -99.09 -123.26 REMARK 500 GLN B 266 66.76 39.80 REMARK 500 PRO B 269 -9.73 -58.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 116.0 REMARK 620 3 CYS A 289 SG 111.1 115.4 REMARK 620 4 HOH A 503 O 101.9 107.0 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 253 ND1 REMARK 620 2 CYS B 284 SG 114.1 REMARK 620 3 CYS B 289 SG 107.7 117.7 REMARK 620 4 HOH B 509 O 105.5 105.1 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO B 405 DBREF 5SXG A 191 378 UNP Q9UH17 ABC3B_HUMAN 191 378 DBREF 5SXG B 191 378 UNP Q9UH17 ABC3B_HUMAN 191 378 SEQADV 5SXG SER A 186 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG GLU A 187 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG ILE A 188 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG LEU A 189 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG ARG A 190 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5SXG SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5SXG LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5SXG A UNP Q9UH17 ALA 242 DELETION SEQADV 5SXG A UNP Q9UH17 LYS 243 DELETION SEQADV 5SXG A UNP Q9UH17 ASN 244 DELETION SEQADV 5SXG A UNP Q9UH17 LEU 245 DELETION SEQADV 5SXG A UNP Q9UH17 LEU 246 DELETION SEQADV 5SXG A UNP Q9UH17 CYS 247 DELETION SEQADV 5SXG A UNP Q9UH17 GLY 248 DELETION SEQADV 5SXG A UNP Q9UH17 PHE 249 DELETION SEQADV 5SXG SER A 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5SXG LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5SXG SER B 186 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG GLU B 187 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG ILE B 188 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG LEU B 189 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG ARG B 190 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXG SER B 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5SXG SER B 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5SXG LYS B 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5SXG B UNP Q9UH17 ALA 242 DELETION SEQADV 5SXG B UNP Q9UH17 LYS 243 DELETION SEQADV 5SXG B UNP Q9UH17 ASN 244 DELETION SEQADV 5SXG B UNP Q9UH17 LEU 245 DELETION SEQADV 5SXG B UNP Q9UH17 LEU 246 DELETION SEQADV 5SXG B UNP Q9UH17 CYS 247 DELETION SEQADV 5SXG B UNP Q9UH17 GLY 248 DELETION SEQADV 5SXG B UNP Q9UH17 PHE 249 DELETION SEQADV 5SXG SER B 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5SXG LYS B 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQRES 1 A 185 SER GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 185 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 185 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 185 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 185 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 185 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 185 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 185 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 185 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 185 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 185 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 185 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 185 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 185 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 185 ILE LEU GLN SEQRES 1 B 185 SER GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 B 185 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 B 185 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 B 185 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 B 185 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 B 185 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 B 185 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 B 185 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 B 185 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 B 185 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 B 185 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 B 185 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 B 185 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 B 185 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 B 185 ILE LEU GLN HET ZN A 401 1 HET PDO A 402 13 HET IMD A 403 10 HET PDO A 404 13 HET ZN B 401 1 HET PDO B 402 13 HET PDO B 403 13 HET PDO B 404 13 HET PDO B 405 13 HETNAM ZN ZINC ION HETNAM PDO 1,3-PROPANDIOL HETNAM IMD IMIDAZOLE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PDO 6(C3 H8 O2) FORMUL 5 IMD C3 H5 N2 1+ FORMUL 12 HOH *281(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 HIS A 253 VAL A 262 1 10 HELIX 3 AA3 PRO A 263 GLN A 266 5 4 HELIX 4 AA4 GLY A 288 ASN A 300 1 13 HELIX 5 AA5 LEU A 318 ALA A 329 1 12 HELIX 6 AA6 THR A 337 VAL A 349 1 13 HELIX 7 AA7 GLY A 361 GLN A 378 1 18 HELIX 8 AA8 ASP B 194 ASN B 203 1 10 HELIX 9 AA9 HIS B 253 VAL B 262 1 10 HELIX 10 AB1 PRO B 263 GLN B 266 5 4 HELIX 11 AB2 GLY B 288 ASN B 300 1 13 HELIX 12 AB3 LEU B 318 ALA B 329 1 12 HELIX 13 AB4 THR B 337 VAL B 349 1 13 HELIX 14 AB5 GLY B 361 GLN B 378 1 18 SHEET 1 AA1 5 HIS A 234 CYS A 239 0 SHEET 2 AA1 5 TYR A 215 LEU A 223 -1 N LEU A 216 O LEU A 238 SHEET 3 AA1 5 ILE A 272 TRP A 281 -1 O ARG A 274 N GLU A 221 SHEET 4 AA1 5 VAL A 303 ARG A 311 1 O LYS A 308 N TRP A 277 SHEET 5 AA1 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 SHEET 1 AA2 5 MET B 235 CYS B 239 0 SHEET 2 AA2 5 TYR B 215 GLU B 221 -1 N LEU B 216 O LEU B 238 SHEET 3 AA2 5 TYR B 273 TRP B 281 -1 O PHE B 278 N CYS B 217 SHEET 4 AA2 5 VAL B 303 ARG B 311 1 O LYS B 308 N TRP B 277 SHEET 5 AA2 5 GLN B 332 ILE B 335 1 O GLN B 332 N ILE B 307 LINK ND1 HIS A 253 ZN ZN A 401 1555 1555 2.08 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.26 LINK SG CYS A 289 ZN ZN A 401 1555 1555 2.20 LINK ZN ZN A 401 O HOH A 503 1555 1555 2.20 LINK ND1 HIS B 253 ZN ZN B 401 1555 1555 2.03 LINK SG CYS B 284 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 289 ZN ZN B 401 1555 1555 2.20 LINK ZN ZN B 401 O HOH B 509 1555 1555 2.24 SITE 1 AC1 4 HIS A 253 CYS A 284 CYS A 289 HOH A 503 SITE 1 AC2 11 ARG A 212 GLN A 213 THR A 214 ASN A 240 SITE 2 AC2 11 HIS A 253 GLU A 255 SER A 282 CYS A 284 SITE 3 AC2 11 TYR A 313 HOH A 503 HOH A 554 SITE 1 AC3 3 LYS A 308 TYR A 343 HOH A 505 SITE 1 AC4 6 ARG A 212 GLN A 213 ASN A 240 GLU A 241 SITE 2 AC4 6 SER A 250 GLY A 251 SITE 1 AC5 4 HIS B 253 CYS B 284 CYS B 289 HOH B 509 SITE 1 AC6 9 ARG B 212 THR B 214 ASN B 240 HIS B 253 SITE 2 AC6 9 SER B 282 CYS B 284 TYR B 313 HOH B 509 SITE 3 AC6 9 HOH B 534 SITE 1 AC7 2 GLU B 342 HOH B 531 SITE 1 AC8 6 ASP B 314 TYR B 319 LEU B 369 ARG B 372 SITE 2 AC8 6 HOH B 518 HOH B 553 SITE 1 AC9 3 VAL B 208 ARG B 210 TRP B 281 CRYST1 44.390 50.800 76.890 90.00 102.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022528 0.000000 0.005143 0.00000 SCALE2 0.000000 0.019685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013340 0.00000