PDB Short entry for 5SZH HEADER ENDOCYTOSIS 14-AUG-16 5SZH TITLE STRUCTURE OF HUMAN RAB1B IN COMPLEX WITH THE BMERB DOMAIN OF MICAL-CL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICAL C-TERMINAL-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ERK2-BINDING TESTICULAR PROTEIN 1,EBITEIN-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS-RELATED PROTEIN RAB-1B; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MICALCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAB1B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MICAL-CL, DUF3585, MICAL, RAB EFFECTOR, RAB1B, PROTEIN TRANSPORT, KEYWDS 2 ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.RAI,A.OPRISKO,J.CAMPOS,Y.FU,T.FRIESE,R.S.GOODY,M.P.MUELLER, AUTHOR 2 E.M.GAZDAG REVDAT 5 17-JAN-24 5SZH 1 LINK ATOM REVDAT 4 06-SEP-17 5SZH 1 REMARK REVDAT 3 14-SEP-16 5SZH 1 JRNL REVDAT 2 07-SEP-16 5SZH 1 JRNL REVDAT 1 24-AUG-16 5SZH 0 JRNL AUTH A.RAI,A.OPRISKO,J.CAMPOS,Y.FU,T.FRIESE,A.ITZEN,R.S.GOODY, JRNL AUTH 2 E.M.GAZDAG,M.P.MULLER JRNL TITL BMERB DOMAINS ARE BIVALENT RAB8 FAMILY EFFECTORS EVOLVED BY JRNL TITL 2 GENE DUPLICATION. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27552051 JRNL DOI 10.7554/ELIFE.18675 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8347 - 4.5988 1.00 2928 155 0.1619 0.1799 REMARK 3 2 4.5988 - 3.6507 1.00 2843 149 0.1488 0.1523 REMARK 3 3 3.6507 - 3.1893 1.00 2792 147 0.1826 0.2433 REMARK 3 4 3.1893 - 2.8978 1.00 2778 147 0.2126 0.2679 REMARK 3 5 2.8978 - 2.6901 1.00 2755 145 0.2200 0.2668 REMARK 3 6 2.6901 - 2.5315 1.00 2778 145 0.2238 0.2771 REMARK 3 7 2.5315 - 2.4048 1.00 2739 144 0.2490 0.2599 REMARK 3 8 2.4048 - 2.3001 1.00 2732 144 0.2694 0.2979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2615 REMARK 3 ANGLE : 1.104 3523 REMARK 3 CHIRALITY : 0.040 396 REMARK 3 PLANARITY : 0.004 451 REMARK 3 DIHEDRAL : 15.683 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 531:678) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0648 -34.0777 -47.8184 REMARK 3 T TENSOR REMARK 3 T11: 0.4406 T22: 0.4799 REMARK 3 T33: 0.4519 T12: 0.0002 REMARK 3 T13: 0.0158 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.2720 L22: 0.5638 REMARK 3 L33: 3.3723 L12: 0.4150 REMARK 3 L13: 0.7941 L23: 0.3947 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: -0.0391 S13: -0.1618 REMARK 3 S21: -0.0043 S22: 0.0110 S23: -0.0393 REMARK 3 S31: 0.2484 S32: -0.1884 S33: -0.0808 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 0:174) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5022 -11.1242 -31.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.4191 REMARK 3 T33: 0.4786 T12: -0.0009 REMARK 3 T13: -0.0502 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 3.0898 L22: 4.1920 REMARK 3 L33: 2.2212 L12: -1.0080 REMARK 3 L13: -0.3198 L23: 0.6717 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0735 S13: 0.1627 REMARK 3 S21: -0.0196 S22: 0.0002 S23: -0.1066 REMARK 3 S31: -0.0651 S32: 0.2454 S33: 0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000220789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4-8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NKV, 5SZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-22% PEG3350 0.1M BIS-TRIS PROPANE REMARK 280 0.2M TRI-SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.92500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.92500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.87500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.92500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.87500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 413 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 576 REMARK 465 ASP A 577 REMARK 465 SER A 578 REMARK 465 GLY A 579 REMARK 465 THR A 580 REMARK 465 GLN A 679 REMARK 465 HIS A 680 REMARK 465 PHE A 681 REMARK 465 GLU A 682 REMARK 465 SER A 683 REMARK 465 GLY B 174 REMARK 465 PRO B 175 REMARK 465 GLY B 176 REMARK 465 ALA B 177 REMARK 465 ALA B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 GLY B 181 REMARK 465 GLU B 182 REMARK 465 ARG B 183 REMARK 465 PRO B 184 REMARK 465 ASN B 185 REMARK 465 LEU B 186 REMARK 465 LYS B 187 REMARK 465 ILE B 188 REMARK 465 ASP B 189 REMARK 465 SER B 190 REMARK 465 THR B 191 REMARK 465 PRO B 192 REMARK 465 VAL B 193 REMARK 465 LYS B 194 REMARK 465 PRO B 195 REMARK 465 ALA B 196 REMARK 465 GLY B 197 REMARK 465 GLY B 198 REMARK 465 GLY B 199 REMARK 465 CYS B 200 REMARK 465 CYS B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 567 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 ARG A 573 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 581 CG CD OE1 NE2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 LYS A 675 CG CD CE NZ REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 ASP A 678 CG OD1 OD2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 MET B 173 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 122 41.86 73.33 REMARK 500 ALA B 155 -4.04 78.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 THR B 40 OG1 79.9 REMARK 620 3 GNP B 301 O1G 167.1 91.4 REMARK 620 4 GNP B 301 O1B 99.3 177.4 89.0 REMARK 620 5 HOH B 404 O 93.8 83.9 94.8 98.6 REMARK 620 6 HOH B 410 O 86.2 88.1 83.9 89.4 171.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 DBREF 5SZH A 534 683 UNP Q6ZW33 MICLK_HUMAN 534 683 DBREF 5SZH B 1 201 UNP Q9H0U4 RAB1B_HUMAN 1 201 SEQADV 5SZH GLY A 531 UNP Q6ZW33 EXPRESSION TAG SEQADV 5SZH HIS A 532 UNP Q6ZW33 EXPRESSION TAG SEQADV 5SZH MET A 533 UNP Q6ZW33 EXPRESSION TAG SEQADV 5SZH GLY B -1 UNP Q9H0U4 EXPRESSION TAG SEQADV 5SZH HIS B 0 UNP Q9H0U4 EXPRESSION TAG SEQRES 1 A 153 GLY HIS MET LYS GLN GLU GLU LEU LYS ARG LEU TYR LYS SEQRES 2 A 153 ALA GLN ALA ILE GLN ARG GLN LEU GLU GLU VAL GLU GLU SEQRES 3 A 153 ARG GLN ARG ALA SER GLU ILE GLN GLY VAL ARG LEU GLU SEQRES 4 A 153 LYS ALA LEU ARG GLY GLU ALA ASP SER GLY THR GLN ASP SEQRES 5 A 153 GLU ALA GLN LEU LEU GLN GLU TRP PHE LYS LEU VAL LEU SEQRES 6 A 153 GLU LYS ASN LYS LEU MET ARG TYR GLU SER GLU LEU LEU SEQRES 7 A 153 ILE MET ALA GLN GLU LEU GLU LEU GLU ASP HIS GLN SER SEQRES 8 A 153 ARG LEU GLU GLN LYS LEU ARG GLU LYS MET LEU LYS GLU SEQRES 9 A 153 GLU SER GLN LYS ASP GLU LYS ASP LEU ASN GLU GLU GLN SEQRES 10 A 153 GLU VAL PHE THR GLU LEU MET GLN VAL ILE GLU GLN ARG SEQRES 11 A 153 ASP LYS LEU VAL ASP SER LEU GLU GLU GLN ARG ILE ARG SEQRES 12 A 153 GLU LYS ALA GLU ASP GLN HIS PHE GLU SER SEQRES 1 B 203 GLY HIS MET ASN PRO GLU TYR ASP TYR LEU PHE LYS LEU SEQRES 2 B 203 LEU LEU ILE GLY ASP SER GLY VAL GLY LYS SER CYS LEU SEQRES 3 B 203 LEU LEU ARG PHE ALA ASP ASP THR TYR THR GLU SER TYR SEQRES 4 B 203 ILE SER THR ILE GLY VAL ASP PHE LYS ILE ARG THR ILE SEQRES 5 B 203 GLU LEU ASP GLY LYS THR ILE LYS LEU GLN ILE TRP ASP SEQRES 6 B 203 THR ALA GLY GLN GLU ARG PHE ARG THR ILE THR SER SER SEQRES 7 B 203 TYR TYR ARG GLY ALA HIS GLY ILE ILE VAL VAL TYR ASP SEQRES 8 B 203 VAL THR ASP GLN GLU SER TYR ALA ASN VAL LYS GLN TRP SEQRES 9 B 203 LEU GLN GLU ILE ASP ARG TYR ALA SER GLU ASN VAL ASN SEQRES 10 B 203 LYS LEU LEU VAL GLY ASN LYS SER ASP LEU THR THR LYS SEQRES 11 B 203 LYS VAL VAL ASP ASN THR THR ALA LYS GLU PHE ALA ASP SEQRES 12 B 203 SER LEU GLY ILE PRO PHE LEU GLU THR SER ALA LYS ASN SEQRES 13 B 203 ALA THR ASN VAL GLU GLN ALA PHE MET THR MET ALA ALA SEQRES 14 B 203 GLU ILE LYS LYS ARG MET GLY PRO GLY ALA ALA SER GLY SEQRES 15 B 203 GLY GLU ARG PRO ASN LEU LYS ILE ASP SER THR PRO VAL SEQRES 16 B 203 LYS PRO ALA GLY GLY GLY CYS CYS HET GNP B 301 32 HET MG B 302 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *27(H2 O) HELIX 1 AA1 GLY A 531 ARG A 573 1 43 HELIX 2 AA2 ASP A 582 LYS A 633 1 52 HELIX 3 AA3 GLU A 634 LYS A 638 5 5 HELIX 4 AA4 ASP A 639 ASP A 678 1 40 HELIX 5 AA5 GLY B 20 ASP B 31 1 12 HELIX 6 AA6 GLN B 67 ARG B 69 5 3 HELIX 7 AA7 PHE B 70 SER B 76 1 7 HELIX 8 AA8 ASP B 92 ASN B 98 1 7 HELIX 9 AA9 ASN B 98 ALA B 110 1 13 HELIX 10 AB1 LEU B 125 LYS B 129 5 5 HELIX 11 AB2 ASP B 132 LEU B 143 1 12 HELIX 12 AB3 ASN B 157 MET B 173 1 17 SHEET 1 AA1 6 VAL B 43 LEU B 52 0 SHEET 2 AA1 6 LYS B 55 THR B 64 -1 O ILE B 57 N ILE B 50 SHEET 3 AA1 6 TYR B 7 GLY B 15 1 N LEU B 11 O TRP B 62 SHEET 4 AA1 6 GLY B 83 ASP B 89 1 O ILE B 85 N LEU B 12 SHEET 5 AA1 6 ASN B 115 ASN B 121 1 O ASN B 121 N TYR B 88 SHEET 6 AA1 6 PHE B 147 GLU B 149 1 O LEU B 148 N LEU B 118 LINK OG SER B 22 MG MG B 302 1555 1555 2.04 LINK OG1 THR B 40 MG MG B 302 1555 1555 2.12 LINK O1G GNP B 301 MG MG B 302 1555 1555 2.02 LINK O1B GNP B 301 MG MG B 302 1555 1555 2.04 LINK MG MG B 302 O HOH B 404 1555 1555 2.07 LINK MG MG B 302 O HOH B 410 1555 1555 2.12 SITE 1 AC1 25 SER B 17 GLY B 18 VAL B 19 GLY B 20 SITE 2 AC1 25 LYS B 21 SER B 22 CYS B 23 TYR B 33 SITE 3 AC1 25 THR B 34 GLU B 35 TYR B 37 SER B 39 SITE 4 AC1 25 THR B 40 GLY B 66 ASN B 121 LYS B 122 SITE 5 AC1 25 ASP B 124 LEU B 125 SER B 151 ALA B 152 SITE 6 AC1 25 LYS B 153 MG B 302 HOH B 404 HOH B 408 SITE 7 AC1 25 HOH B 410 SITE 1 AC2 5 SER B 22 THR B 40 GNP B 301 HOH B 404 SITE 2 AC2 5 HOH B 410 CRYST1 61.750 129.380 129.850 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007701 0.00000