PDB Short entry for 5T09 HEADER TOXIN 15-AUG-16 5T09 TITLE THE STRUCTURE OF THE TYPE III EFFECTOR HOPBA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE III SECRETION SYSTEM EFFECTOR HOPBA1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. APTATA; SOURCE 3 ORGANISM_TAXID: 83167; SOURCE 4 GENE: ALO85_00915; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA KEYWDS ALPHA-BETA FOLD, PARALLEL BETA CORE, EREA/CHAN-LIKE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR K.CHERKIS,M.MACHIUS,M.T.NISHIMURA,J.L.DANGL REVDAT 5 20-NOV-19 5T09 1 REMARK REVDAT 4 20-SEP-17 5T09 1 REMARK REVDAT 3 22-MAR-17 5T09 1 JRNL REVDAT 2 15-FEB-17 5T09 1 JRNL REVDAT 1 01-FEB-17 5T09 0 JRNL AUTH M.T.NISHIMURA,R.G.ANDERSON,K.A.CHERKIS,T.F.LAW,Q.L.LIU, JRNL AUTH 2 M.MACHIUS,Z.L.NIMCHUK,L.YANG,E.H.CHUNG,F.EL KASMI,M.HYUNH, JRNL AUTH 3 E.OSBORNE NISHIMURA,J.E.SONDEK,J.L.DANGL JRNL TITL TIR-ONLY PROTEIN RBA1 RECOGNIZES A PATHOGEN EFFECTOR TO JRNL TITL 2 REGULATE CELL DEATH IN ARABIDOPSIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E2053 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28137883 JRNL DOI 10.1073/PNAS.1620973114 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1307 - 3.6573 1.00 2681 122 0.1691 0.1921 REMARK 3 2 3.6573 - 2.9035 1.00 2550 129 0.2239 0.2562 REMARK 3 3 2.9035 - 2.5366 1.00 2536 140 0.2260 0.2722 REMARK 3 4 2.5366 - 2.3048 1.00 2491 143 0.2277 0.2716 REMARK 3 5 2.3048 - 2.1396 1.00 2484 144 0.2394 0.2653 REMARK 3 6 2.1396 - 2.0135 0.99 2474 122 0.2594 0.2745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1671 REMARK 3 ANGLE : 0.505 2259 REMARK 3 CHIRALITY : 0.043 247 REMARK 3 PLANARITY : 0.003 296 REMARK 3 DIHEDRAL : 9.937 1001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3347 38.5605 24.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.3703 T22: 0.5155 REMARK 3 T33: 0.4817 T12: -0.0641 REMARK 3 T13: -0.0279 T23: 0.1443 REMARK 3 L TENSOR REMARK 3 L11: 6.2707 L22: 4.6303 REMARK 3 L33: 2.1818 L12: -0.0630 REMARK 3 L13: 1.3518 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.3436 S12: 0.6703 S13: 1.2927 REMARK 3 S21: -0.4988 S22: 0.1087 S23: -0.3806 REMARK 3 S31: -0.5257 S32: 0.3133 S33: 0.1503 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5755 17.0639 21.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.5256 T22: 0.6719 REMARK 3 T33: 0.6779 T12: 0.0530 REMARK 3 T13: 0.0841 T23: -0.1838 REMARK 3 L TENSOR REMARK 3 L11: 8.3116 L22: 6.6559 REMARK 3 L33: 7.7151 L12: 1.2310 REMARK 3 L13: 7.2439 L23: -1.9355 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 2.3483 S13: -1.6136 REMARK 3 S21: -1.5878 S22: 0.3120 S23: -0.9568 REMARK 3 S31: 0.7378 S32: 1.3824 S33: -0.6406 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8133 21.2883 27.0474 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.4760 REMARK 3 T33: 0.5190 T12: -0.1159 REMARK 3 T13: -0.0341 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 7.0808 L22: 3.8445 REMARK 3 L33: 7.2881 L12: -4.1305 REMARK 3 L13: -0.1552 L23: 2.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0001 S13: -1.5352 REMARK 3 S21: 0.3445 S22: 0.3454 S23: 0.5822 REMARK 3 S31: 1.3350 S32: -0.7355 S33: 0.1331 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7029 25.5314 28.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.5107 REMARK 3 T33: 0.4154 T12: -0.0422 REMARK 3 T13: 0.0571 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 6.1794 L22: 2.6702 REMARK 3 L33: 0.4304 L12: -0.3210 REMARK 3 L13: 0.5388 L23: 0.9945 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.3040 S13: -0.1090 REMARK 3 S21: -0.2693 S22: 0.0140 S23: 0.0996 REMARK 3 S31: 0.3922 S32: -0.0327 S33: 0.0646 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0629 27.5025 40.2953 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.3847 REMARK 3 T33: 0.3324 T12: 0.0429 REMARK 3 T13: -0.0750 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 6.4563 L22: 5.5286 REMARK 3 L33: 3.0092 L12: -0.3245 REMARK 3 L13: 0.7772 L23: 2.1270 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: 0.1569 S13: -0.3880 REMARK 3 S21: 0.1111 S22: -0.1782 S23: -0.0341 REMARK 3 S31: 0.0202 S32: -0.5108 S33: 0.2089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3398 41.2476 32.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.4152 T22: 0.4419 REMARK 3 T33: 0.6572 T12: 0.0088 REMARK 3 T13: -0.1224 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 5.1124 L22: 4.2014 REMARK 3 L33: 2.9165 L12: -1.3539 REMARK 3 L13: 1.0924 L23: -0.7002 REMARK 3 S TENSOR REMARK 3 S11: -0.7062 S12: -0.1494 S13: 1.6731 REMARK 3 S21: 0.2287 S22: 0.1805 S23: -0.7240 REMARK 3 S31: -0.8168 S32: 0.2570 S33: -0.0585 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000220636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.0.0 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.0.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16048 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 32.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 49.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CRANK 1.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 120UM IN LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6UL HANGING VAPOR DIFFUSION DROPS OVER REMARK 280 0.5M K2SO4, 0.1M HEPES PH 7.0, AND 30% V/V PEG 400. PROTEIN REMARK 280 CONCENTRATION 10.7 UG/ML. 1:1 RATIO PROTEIN:MOTHER LIQUOR, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.12667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.25333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.25333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 SER A 12 REMARK 465 TYR A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 144 110.65 -163.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 O REMARK 620 2 PRO A 202 O 106.5 REMARK 620 3 MSE A 205 O 113.4 77.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 DBREF1 5T09 A 1 239 UNP A0A0Q0CD50_PSEAP DBREF2 5T09 A A0A0Q0CD50 1 239 SEQRES 1 A 239 MSE LEU ASN ARG ILE SER SER SER SER PRO THR SER TYR SEQRES 2 A 239 VAL SER SER GLY SER SER SER ALA GLY ILE ASN PRO SER SEQRES 3 A 239 ILE ASN VAL ARG PRO PRO ARG GLY GLY PRO VAL ASP THR SEQRES 4 A 239 LEU VAL GLY ALA ALA SER ASP ASN ASN LEU VAL TYR ILE SEQRES 5 A 239 GLY ASP GLU HIS GLY LYS LEU PHE ILE PRO LYS LEU ILE SEQRES 6 A 239 THR GLU SER ALA ALA LYS LEU LYS ASN ALA GLY VAL ASP SEQRES 7 A 239 HIS LEU ALA VAL GLU PHE VAL LYS HIS SER ASP GLY ALA SEQRES 8 A 239 ALA PHE ARG GLU ALA LEU SER ASP GLY LYS SER ALA VAL SEQRES 9 A 239 LYS HIS PHE LEU GLU ALA SER TRP GLY ARG HIS GLY ASP SEQRES 10 A 239 ALA TRP LEU ASP LYS VAL SER GLU ALA LEU CYS SER ALA SEQRES 11 A 239 HIS ARG ALA GLY ILE TYR VAL SER GLY ILE ASP ARG LYS SEQRES 12 A 239 MSE ALA ILE ASP GLN PRO LYS THR PRO MSE GLN LYS ILE SEQRES 13 A 239 LEU TYR MSE LYS LYS ARG LEU ALA LEU ASN VAL ALA TRP SEQRES 14 A 239 ASP ALA ALA ALA THR ARG GLU ALA SER ALA VAL CYS ALA SEQRES 15 A 239 ASN LYS SER ILE VAL TRP GLY GLY ALA GLY HIS PHE SER SEQRES 16 A 239 ASN SER LYS THR ASP GLY PRO LYS ASP MSE ARG PRO GLY SEQRES 17 A 239 LEU VAL ILE SER PHE ASP LEU THR GLY ARG GLY SER SER SEQRES 18 A 239 ARG ILE ASN ASP ALA ASP GLU HIS SER HIS ILE VAL ILE SEQRES 19 A 239 ALA GLY GLU ASP ASN MODRES 5T09 MSE A 144 MET MODIFIED RESIDUE MODRES 5T09 MSE A 153 MET MODIFIED RESIDUE MODRES 5T09 MSE A 159 MET MODIFIED RESIDUE MODRES 5T09 MSE A 205 MET MODIFIED RESIDUE HET MSE A 144 17 HET MSE A 153 17 HET MSE A 159 17 HET MSE A 205 17 HET K A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 K K 1+ FORMUL 3 CL 4(CL 1-) FORMUL 7 HOH *26(H2 O) HELIX 1 AA1 GLY A 35 ASN A 47 1 13 HELIX 2 AA2 LEU A 59 ALA A 75 1 17 HELIX 3 AA3 ASP A 89 GLY A 100 1 12 HELIX 4 AA4 GLY A 100 GLY A 113 1 14 HELIX 5 AA5 GLY A 116 ALA A 133 1 18 HELIX 6 AA6 THR A 151 ALA A 164 1 14 HELIX 7 AA7 LEU A 165 VAL A 180 1 16 HELIX 8 AA8 GLY A 192 SER A 195 5 4 SHEET 1 AA1 7 TYR A 136 ASP A 141 0 SHEET 2 AA1 7 VAL A 77 LYS A 86 1 N LEU A 80 O TYR A 136 SHEET 3 AA1 7 LYS A 184 GLY A 190 1 O TRP A 188 N ALA A 81 SHEET 4 AA1 7 LEU A 49 ASP A 54 1 N ASP A 54 O GLY A 189 SHEET 5 AA1 7 LEU A 209 ASP A 214 1 O LEU A 209 N TYR A 51 SHEET 6 AA1 7 ILE A 232 ALA A 235 1 O ILE A 234 N SER A 212 SHEET 7 AA1 7 ARG A 222 ILE A 223 -1 N ARG A 222 O VAL A 233 LINK C LYS A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.33 LINK C PRO A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N GLN A 154 1555 1555 1.34 LINK C TYR A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N LYS A 160 1555 1555 1.34 LINK O ASP A 200 K K A 301 1555 1555 2.68 LINK O PRO A 202 K K A 301 1555 1555 2.70 LINK C ASP A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N ARG A 206 1555 1555 1.33 LINK O MSE A 205 K K A 301 1555 1555 2.67 SITE 1 AC1 3 ASP A 200 PRO A 202 MSE A 205 SITE 1 AC2 2 LYS A 101 ASP A 227 SITE 1 AC3 2 HIS A 87 HOH A 412 SITE 1 AC4 2 ARG A 162 HIS A 193 CRYST1 64.865 64.865 96.380 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015417 0.008901 0.000000 0.00000 SCALE2 0.000000 0.017802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010376 0.00000