PDB Short entry for 5T8Z HEADER HYDROLASE/ANTIBIOTIC 08-SEP-16 5T8Z TITLE CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM BURKHOLDERIA TITLE 2 MULTIVORANS IN COMPLEX WITH ACTINONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PDF,POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 STRAIN: ATCC 17616 / 249; SOURCE 6 GENE: DEF, BMULJ_01994; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUMUA.00078.B.B1 KEYWDS SSGCID, PEPTIDE DEFORMYLASE, ACTINONIN, BURKHOLDERIA MULTIVORANS, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, HYDROLASE, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 04-OCT-23 5T8Z 1 REMARK REVDAT 3 11-DEC-19 5T8Z 1 REMARK REVDAT 2 20-SEP-17 5T8Z 1 JRNL REMARK REVDAT 1 12-OCT-16 5T8Z 0 JRNL AUTH R.M.IRWIN,J.ABENDROTH,S.J.MAYCLIN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM BURKHOLDERIA JRNL TITL 2 MULTIVORANS IN COMPLEX WITH ACTINONIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0276 - 4.2337 0.99 1356 172 0.1408 0.1456 REMARK 3 2 4.2337 - 3.3610 1.00 1312 139 0.1419 0.2002 REMARK 3 3 3.3610 - 2.9363 1.00 1284 160 0.1855 0.2205 REMARK 3 4 2.9363 - 2.6679 1.00 1289 135 0.1919 0.2534 REMARK 3 5 2.6679 - 2.4767 1.00 1280 139 0.1813 0.2460 REMARK 3 6 2.4767 - 2.3307 1.00 1272 130 0.1758 0.2036 REMARK 3 7 2.3307 - 2.2140 1.00 1283 131 0.1707 0.2274 REMARK 3 8 2.2140 - 2.1177 1.00 1282 117 0.1740 0.2191 REMARK 3 9 2.1177 - 2.0361 1.00 1267 139 0.1702 0.2446 REMARK 3 10 2.0361 - 1.9659 1.00 1238 138 0.1752 0.2240 REMARK 3 11 1.9659 - 1.9044 1.00 1272 151 0.1982 0.2520 REMARK 3 12 1.9044 - 1.8500 1.00 1241 130 0.2348 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1319 REMARK 3 ANGLE : 0.997 1788 REMARK 3 CHIRALITY : 0.069 194 REMARK 3 PLANARITY : 0.008 234 REMARK 3 DIHEDRAL : 12.245 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1948 9.0419 10.9803 REMARK 3 T TENSOR REMARK 3 T11: 0.6176 T22: 0.2688 REMARK 3 T33: 0.4218 T12: -0.0418 REMARK 3 T13: 0.1696 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.5497 L22: 1.6651 REMARK 3 L33: 2.2373 L12: 0.8792 REMARK 3 L13: -1.0342 L23: -1.9247 REMARK 3 S TENSOR REMARK 3 S11: -0.6578 S12: 0.2175 S13: -0.4685 REMARK 3 S21: -0.1998 S22: 0.3580 S23: 0.0363 REMARK 3 S31: 1.1187 S32: -0.4560 S33: 0.2451 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2615 18.8595 21.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.3372 REMARK 3 T33: 0.2997 T12: -0.0056 REMARK 3 T13: 0.0174 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.7903 L22: 3.4056 REMARK 3 L33: 7.3706 L12: 0.6265 REMARK 3 L13: -0.8056 L23: -2.8683 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.0573 S13: -0.0472 REMARK 3 S21: 0.3254 S22: 0.3541 S23: 0.2932 REMARK 3 S31: -0.0803 S32: -1.1397 S33: -0.4214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6134 7.5375 23.6376 REMARK 3 T TENSOR REMARK 3 T11: 0.7205 T22: 0.3924 REMARK 3 T33: 0.4884 T12: 0.0847 REMARK 3 T13: 0.1430 T23: 0.1858 REMARK 3 L TENSOR REMARK 3 L11: 4.4110 L22: 6.0814 REMARK 3 L33: 3.1701 L12: -1.6542 REMARK 3 L13: -0.7126 L23: 2.6305 REMARK 3 S TENSOR REMARK 3 S11: -0.3956 S12: -0.4875 S13: -0.7718 REMARK 3 S21: -0.4048 S22: 0.0089 S23: -0.9027 REMARK 3 S31: 1.6051 S32: 0.3869 S33: 0.3275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6278 15.0153 21.4535 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.3981 REMARK 3 T33: 0.4430 T12: 0.0433 REMARK 3 T13: 0.1009 T23: 0.1228 REMARK 3 L TENSOR REMARK 3 L11: 5.1090 L22: 3.0161 REMARK 3 L33: 2.1206 L12: 0.4683 REMARK 3 L13: -0.5569 L23: 0.5578 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.4886 S13: -0.4400 REMARK 3 S21: -0.2712 S22: -0.0621 S23: -0.7117 REMARK 3 S31: 0.5406 S32: 0.3763 S33: 0.1149 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9793 25.2903 25.3685 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.3065 REMARK 3 T33: 0.2141 T12: 0.0160 REMARK 3 T13: 0.0145 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 9.5509 L22: 4.8978 REMARK 3 L33: 5.0647 L12: 6.7727 REMARK 3 L13: -6.1330 L23: -4.6562 REMARK 3 S TENSOR REMARK 3 S11: 0.2120 S12: -0.2290 S13: 0.1409 REMARK 3 S21: 0.3669 S22: -0.0170 S23: 0.3811 REMARK 3 S31: -0.1432 S32: 0.1177 S33: -0.2154 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7015 23.3677 11.6153 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.2651 REMARK 3 T33: 0.2815 T12: 0.0206 REMARK 3 T13: 0.1038 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.6732 L22: 3.8522 REMARK 3 L33: 5.6401 L12: 1.2107 REMARK 3 L13: 1.8241 L23: 4.5690 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.0143 S13: -0.2708 REMARK 3 S21: -0.1027 S22: 0.2444 S23: -0.4702 REMARK 3 S31: 0.2740 S32: 0.3144 S33: -0.2095 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6803 23.3383 29.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.3926 REMARK 3 T33: 0.2342 T12: 0.0210 REMARK 3 T13: 0.0268 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 5.5662 L22: 5.0607 REMARK 3 L33: 6.1570 L12: 5.2135 REMARK 3 L13: -3.8194 L23: -2.3565 REMARK 3 S TENSOR REMARK 3 S11: 0.6117 S12: -0.9678 S13: -0.1614 REMARK 3 S21: 0.6632 S22: -0.6098 S23: 0.1371 REMARK 3 S31: 0.0993 S32: 0.3421 S33: 0.0186 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4505 23.3866 21.9095 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2661 REMARK 3 T33: 0.2708 T12: 0.0781 REMARK 3 T13: 0.0433 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 3.9123 L22: 3.5940 REMARK 3 L33: 5.6844 L12: 2.4377 REMARK 3 L13: -0.3609 L23: -0.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.1629 S12: -0.4628 S13: -0.4285 REMARK 3 S21: 0.0678 S22: -0.0359 S23: -0.2943 REMARK 3 S31: 0.0153 S32: 0.1604 S33: 0.1187 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9756 19.9485 3.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 0.3330 REMARK 3 T33: 0.2290 T12: -0.0110 REMARK 3 T13: 0.0237 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 9.5996 L22: 7.4948 REMARK 3 L33: 8.7275 L12: -4.8927 REMARK 3 L13: -7.5855 L23: 5.5731 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.1638 S13: -0.1800 REMARK 3 S21: -0.0548 S22: 0.2604 S23: -0.2783 REMARK 3 S31: -0.0604 S32: 0.4886 S33: -0.2517 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 39.019 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5HGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 F4 (272591F4): 40% (V/V) PEG REMARK 280 400, 200 MM MAGNESIUM CHLORIDE, 100 MM SODIUM CITRATE:CITRIC REMARK 280 ACID PH 5.5, 3 MM ACTINONIN; DIRECT CRYO; PUCK KUR4-4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.25500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.56000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.27000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.56000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.27000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 64 REMARK 465 SER A 65 REMARK 465 ASN A 66 REMARK 465 ASP A 67 REMARK 465 ARG A 68 REMARK 465 TYR A 69 REMARK 465 PRO A 70 REMARK 465 ASP A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 170 REMARK 465 LEU A 171 REMARK 465 ASP A 172 REMARK 465 PRO A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASN A 43 CG OD1 ND2 REMARK 470 PHE A 63 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 378 O HOH A 399 1.92 REMARK 500 O HOH A 364 O HOH A 388 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 HIS A 141 NE2 112.3 REMARK 620 3 HIS A 145 NE2 92.1 108.2 REMARK 620 4 BB2 A 200 O4 91.3 106.5 140.7 REMARK 620 5 BB2 A 200 O2 149.1 96.9 88.2 69.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BB2 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 201 DBREF1 5T8Z A 1 177 UNP A0A0H3KPJ9_BURM1 DBREF2 5T8Z A A0A0H3KPJ9 1 177 SEQADV 5T8Z MET A -7 UNP A0A0H3KPJ INITIATING METHIONINE SEQADV 5T8Z ALA A -6 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A -5 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A -4 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A -3 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A -2 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A -1 UNP A0A0H3KPJ EXPRESSION TAG SEQADV 5T8Z HIS A 0 UNP A0A0H3KPJ EXPRESSION TAG SEQRES 1 A 185 MET ALA HIS HIS HIS HIS HIS HIS MET ILE ARG GLU ILE SEQRES 2 A 185 LEU LYS MET GLY ASP PRO ARG LEU LEU GLU VAL ALA ARG SEQRES 3 A 185 PRO VAL ASP ARG PHE ASP THR PRO GLU LEU HIS GLU ILE SEQRES 4 A 185 VAL ALA ASP MET PHE GLU THR MET HIS HIS ALA ASN GLY SEQRES 5 A 185 ALA GLY LEU ALA ALA PRO GLN ILE GLY ILE GLY LEU GLN SEQRES 6 A 185 ILE ILE ILE PHE GLY PHE GLY SER ASN ASP ARG TYR PRO SEQRES 7 A 185 ASP ALA PRO PRO VAL PRO GLU THR VAL LEU ILE ASN PRO SEQRES 8 A 185 LYS LEU GLU TYR MET PRO PRO ASP MET GLU GLU GLY TRP SEQRES 9 A 185 GLU GLY CYS LEU SER VAL PRO GLY MET ARG GLY VAL VAL SEQRES 10 A 185 SER ARG TYR ALA LYS VAL ARG TYR SER GLY PHE ASP GLN SEQRES 11 A 185 PHE GLY ALA LYS ILE ASP ARG VAL ALA GLU GLY PHE HIS SEQRES 12 A 185 ALA ARG VAL VAL GLN HIS GLU TYR ASP HIS LEU ILE GLY SEQRES 13 A 185 LYS LEU TYR PRO MET ARG ILE THR ASP PHE THR ARG PHE SEQRES 14 A 185 GLY PHE THR GLU VAL LEU PHE PRO GLY LEU ASP PRO ALA SEQRES 15 A 185 ALA ASP ASP HET BB2 A 200 27 HET FE2 A 201 1 HETNAM BB2 ACTINONIN HETNAM FE2 FE (II) ION HETSYN BB2 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2- HETSYN 2 BB2 HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL- HETSYN 3 BB2 PROPYL]-AMIDE FORMUL 2 BB2 C19 H35 N3 O5 FORMUL 3 FE2 FE 2+ FORMUL 4 HOH *116(H2 O) HELIX 1 AA1 ASP A 10 GLU A 15 5 6 HELIX 2 AA2 THR A 25 ALA A 42 1 18 HELIX 3 AA3 PRO A 50 GLY A 53 5 4 HELIX 4 AA4 GLY A 133 ILE A 147 1 15 HELIX 5 AA5 LEU A 150 ILE A 155 5 6 HELIX 6 AA6 ASP A 157 THR A 159 5 3 HELIX 7 AA7 THR A 164 PHE A 168 1 5 SHEET 1 AA1 5 GLY A 46 ALA A 48 0 SHEET 2 AA1 5 ILE A 58 PHE A 61 -1 O ILE A 60 N LEU A 47 SHEET 3 AA1 5 THR A 78 TYR A 87 -1 O THR A 78 N PHE A 61 SHEET 4 AA1 5 LYS A 114 PHE A 120 -1 O PHE A 120 N ILE A 81 SHEET 5 AA1 5 LYS A 126 GLU A 132 -1 O ALA A 131 N VAL A 115 SHEET 1 AA2 3 MET A 92 GLU A 97 0 SHEET 2 AA2 3 MET A 105 TYR A 112 -1 O ARG A 111 N GLU A 93 SHEET 3 AA2 3 PHE A 161 PHE A 163 -1 O GLY A 162 N ARG A 106 LINK SG CYS A 99 FE FE2 A 201 1555 1555 2.37 LINK NE2 HIS A 141 FE FE2 A 201 1555 1555 2.26 LINK NE2 HIS A 145 FE FE2 A 201 1555 1555 2.32 LINK O4 BB2 A 200 FE FE2 A 201 1555 1555 2.38 LINK O2 BB2 A 200 FE FE2 A 201 1555 1555 2.35 CISPEP 1 PRO A 89 PRO A 90 0 3.37 SITE 1 AC1 15 ASN A 43 GLY A 44 ALA A 45 GLY A 46 SITE 2 AC1 15 GLN A 51 TRP A 96 GLY A 98 CYS A 99 SITE 3 AC1 15 LEU A 100 ARG A 106 PHE A 134 HIS A 141 SITE 4 AC1 15 GLU A 142 HIS A 145 FE2 A 201 SITE 1 AC2 5 GLN A 51 CYS A 99 HIS A 141 HIS A 145 SITE 2 AC2 5 BB2 A 200 CRYST1 39.120 70.540 140.510 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007117 0.00000