PDB Short entry for 5TBA
HEADER    TRANSFERASE/DNA                         11-SEP-16   5TBA              
TITLE     POSTCATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED
TITLE    2 DNA SUBSTRATE, INCORPORATED (-)3TC AND PPI.                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.7.7.7,4.2.99.-;                                                
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: 5-MER PHOSPHORYLATED DOWNSTREAM PRIMER;                    
COMPND   8 CHAIN: D;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 OTHER_DETAILS: SYNTHETIC DNA;                                        
COMPND  11 MOL_ID: 3;                                                           
COMPND  12 MOLECULE: 10-MER PRIMER;                                             
COMPND  13 CHAIN: P;                                                            
COMPND  14 ENGINEERED: YES;                                                     
COMPND  15 OTHER_DETAILS: SYNTHETIC DNA;                                        
COMPND  16 MOL_ID: 4;                                                           
COMPND  17 MOLECULE: 16-MER TEMPLATE;                                           
COMPND  18 CHAIN: T;                                                            
COMPND  19 ENGINEERED: YES;                                                     
COMPND  20 OTHER_DETAILS: SYNTHETIC DNA                                         
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLB;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET28B;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  14 ORGANISM_TAXID: 32630;                                               
SOURCE  15 MOL_ID: 3;                                                           
SOURCE  16 SYNTHETIC: YES;                                                      
SOURCE  17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  18 ORGANISM_TAXID: 32630;                                               
SOURCE  19 MOL_ID: 4;                                                           
SOURCE  20 SYNTHETIC: YES;                                                      
SOURCE  21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  22 ORGANISM_TAXID: 32630                                                
KEYWDS    X-FAMILY, POL BETA, DNA POLYMERASE BETA, TRANSFERASE-DNA COMPLEX      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    R.VYAS,Z.SUO                                                          
REVDAT   4   27-NOV-19 5TBA    1       REMARK                                   
REVDAT   3   13-SEP-17 5TBA    1       SPRSDE                                   
REVDAT   2   25-JAN-17 5TBA    1       JRNL                                     
REVDAT   1   11-JAN-17 5TBA    0                                                
SPRSDE     13-SEP-17 5TBA      4S0D                                             
JRNL        AUTH   A.J.REED,R.VYAS,A.T.RAPER,Z.SUO                              
JRNL        TITL   STRUCTURAL INSIGHTS INTO THE POST-CHEMISTRY STEPS OF         
JRNL        TITL 2 NUCLEOTIDE INCORPORATION CATALYZED BY A DNA POLYMERASE.      
JRNL        REF    J. AM. CHEM. SOC.             V. 139   465 2017              
JRNL        REFN                   ESSN 1520-5126                               
JRNL        PMID   27959534                                                     
JRNL        DOI    10.1021/JACS.6B11258                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.49 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0073                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 25.18                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 14831                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.208                           
REMARK   3   R VALUE            (WORKING SET) : 0.205                           
REMARK   3   FREE R VALUE                     : 0.273                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 781                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.49                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.56                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1009                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 93.24                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2590                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 53                           
REMARK   3   BIN FREE R VALUE                    : 0.3520                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2537                                    
REMARK   3   NUCLEIC ACID ATOMS       : 632                                     
REMARK   3   HETEROGEN ATOMS          : 32                                      
REMARK   3   SOLVENT ATOMS            : 59                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 41.50                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.14000                                             
REMARK   3    B22 (A**2) : 0.06000                                              
REMARK   3    B33 (A**2) : 0.13000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -0.12000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.702         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.325         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.242         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.760        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.932                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.876                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3317 ; 0.010 ; 0.018       
REMARK   3   BOND LENGTHS OTHERS               (A):  2874 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4593 ; 1.464 ; 1.788       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  6659 ; 0.897 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   313 ; 6.516 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   122 ;35.345 ;24.344       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   493 ;16.114 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    17 ;19.166 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   474 ; 0.074 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3255 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   744 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1264 ; 2.781 ; 4.206       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1263 ; 2.782 ; 4.202       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1573 ; 4.632 ; 6.270       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  1574 ; 4.631 ; 6.275       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2053 ; 2.735 ; 4.115       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  2052 ; 2.735 ; 4.116       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  3020 ; 4.247 ; 6.075       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  4045 ; 6.750 ;32.487       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  4037 ; 6.752 ;32.501       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3   POSITIONS                                                          
REMARK   4                                                                      
REMARK   4 5TBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-16.                  
REMARK 100 THE DEPOSITION ID IS D_1000223990.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 11-OCT-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 193                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 31-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97931                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RAYONIX MX225HE                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 15629                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.490                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.180                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : 5.600                              
REMARK 200  R MERGE                    (I) : 0.16800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.59                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.70800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4RQ7                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 47.42                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE, 350 MM SODIUM           
REMARK 280  ACETATE, 17% PEG3350 , PH 8.0, VAPOR DIFFUSION, HANGING DROP,       
REMARK 280  TEMPERATURE 295K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.66250            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21190 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, P, T                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A    -1                                                      
REMARK 465     GLY A     0                                                      
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     THR A   205                                                      
REMARK 465     LYS A   206                                                      
REMARK 465     ALA A   286                                                      
REMARK 465     LEU A   287                                                      
REMARK 465     GLU A   288                                                      
REMARK 465     LYS A   326                                                      
REMARK 465     TYR A   327                                                      
REMARK 465     ARG A   328                                                      
REMARK 465     SER A   334                                                      
REMARK 465     GLU A   335                                                      
REMARK 465     HIS A   336                                                      
REMARK 465     HIS A   337                                                      
REMARK 465     HIS A   338                                                      
REMARK 465     HIS A   339                                                      
REMARK 465     HIS A   340                                                      
REMARK 465     HIS A   341                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.128                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 170      118.31   -168.63                                   
REMARK 500    CYS A 178     -147.45   -100.09                                   
REMARK 500    ASP A 190     -166.96   -165.22                                   
REMARK 500    PRO A 208       48.78    -67.69                                   
REMARK 500    ASN A 281      -71.27    -57.28                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 GLN A  207     PRO A  208                  147.71                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 405  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 SER A  30   O                                                      
REMARK 620 2 HOH A 516   O    82.0                                              
REMARK 620 3 SER A 171   OG   45.9  44.8                                        
REMARK 620 4 HOH A 509   O   169.5 105.5 136.1                                  
REMARK 620 5 HOH A 518   O    89.0 170.6 126.0  83.0                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 404  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LYS A  60   O                                                      
REMARK 620 2 LEU A  62   O    91.3                                              
REMARK 620 3 VAL A  65   O    81.3  82.3                                        
REMARK 620 4  DC D   3   OP1 160.7  81.5  80.0                                  
REMARK 620 5 HOH D 101   O    87.5 165.5  83.2  95.0                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 403  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 101   O                                                      
REMARK 620 2 VAL A 103   O    85.9                                              
REMARK 620 3 ILE A 106   O    93.4  87.8                                        
REMARK 620 4  DG P   9   OP1 168.2  96.7  98.2                                  
REMARK 620 5 HOH P 103   O    86.5 172.4  92.0  90.8                            
REMARK 620 6 HOH A 538   O    82.3  86.3 172.9  86.4  93.4                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 402  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD1                                                    
REMARK 620 2 ASP A 192   OD2  97.8                                              
REMARK 620 3 PPV A 401   O11  78.3 125.9                                        
REMARK 620 4 PPV A 401   O21  87.2 174.9  54.0                                  
REMARK 620 5 42E A 407   O2A  94.9  74.2 159.2 106.5                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 406  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 PPV A 401   O21                                                    
REMARK 620 2 42E A 407   O1A 102.0                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue PPV A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 42E A 407                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5TBC   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5TB8   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5TBB   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5TB9   RELATED DB: PDB                                   
DBREF  5TBA A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
DBREF  5TBA D    1     5  PDB    5TBA     5TBA             1      5             
DBREF  5TBA P    1    10  PDB    5TBA     5TBA             1     10             
DBREF  5TBA T    1    16  PDB    5TBA     5TBA             1     16             
SEQADV 5TBA MET A   -1  UNP  P06746              INITIATING METHIONINE          
SEQADV 5TBA GLY A    0  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  336  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  337  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  338  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  339  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  340  UNP  P06746              EXPRESSION TAG                 
SEQADV 5TBA HIS A  341  UNP  P06746              EXPRESSION TAG                 
SEQRES   1 A  343  MET GLY MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU          
SEQRES   2 A  343  ASN GLY GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN          
SEQRES   3 A  343  PHE GLU LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN          
SEQRES   4 A  343  ALA TYR ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO          
SEQRES   5 A  343  HIS LYS ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO          
SEQRES   6 A  343  GLY VAL GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE          
SEQRES   7 A  343  LEU ALA THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG          
SEQRES   8 A  343  GLN ASP ASP THR SER SER SER ILE ASN PHE LEU THR ARG          
SEQRES   9 A  343  VAL SER GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL          
SEQRES  10 A  343  ASP GLU GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN          
SEQRES  11 A  343  GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS          
SEQRES  12 A  343  TYR PHE GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU          
SEQRES  13 A  343  MET LEU GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS          
SEQRES  14 A  343  LYS VAL ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER          
SEQRES  15 A  343  PHE ARG ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL          
SEQRES  16 A  343  LEU LEU THR HIS PRO SER PHE THR SER GLU SER THR LYS          
SEQRES  17 A  343  GLN PRO LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN          
SEQRES  18 A  343  LYS VAL HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU          
SEQRES  19 A  343  THR LYS PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN          
SEQRES  20 A  343  ASP GLU LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG          
SEQRES  21 A  343  LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR          
SEQRES  22 A  343  PHE THR GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA          
SEQRES  23 A  343  HIS ALA LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR          
SEQRES  24 A  343  ILE ARG PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO          
SEQRES  25 A  343  LEU PRO VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE          
SEQRES  26 A  343  GLN TRP LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HIS          
SEQRES  27 A  343  HIS HIS HIS HIS HIS                                          
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG  DC                      
SEQRES   1 T   16   DC  DC  DG  DA  DC  DG  DG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
HET    PPV  A 401       9                                                       
HET     NA  A 402       1                                                       
HET     NA  A 403       1                                                       
HET     NA  A 404       1                                                       
HET     NA  A 405       1                                                       
HET     NA  A 406       1                                                       
HET    42E  A 407      18                                                       
HETNAM     PPV PYROPHOSPHATE                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM     42E [(2R,5S)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-1,3-                
HETNAM   2 42E  OXATHIOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE                     
HETSYN     42E 3TC-MP                                                           
FORMUL   5  PPV    H4 O7 P2                                                     
FORMUL   6   NA    5(NA 1+)                                                     
FORMUL  11  42E    C8 H12 N3 O6 P S                                             
FORMUL  12  HOH   *59(H2 O)                                                     
HELIX    1 AA1 ASN A   12  VAL A   29  1                                  18    
HELIX    2 AA2 ALA A   32  LYS A   48  1                                  17    
HELIX    3 AA3 SER A   55  LYS A   61  1                                   7    
HELIX    4 AA4 GLY A   66  GLY A   80  1                                  15    
HELIX    5 AA5 LEU A   82  ASP A   91  1                                  10    
HELIX    6 AA6 ASP A   91  THR A  101  1                                  11    
HELIX    7 AA7 GLY A  107  GLU A  117  1                                  11    
HELIX    8 AA8 THR A  121  ASN A  128  1                                   8    
HELIX    9 AA9 GLU A  129  LEU A  132  5                                   4    
HELIX   10 AB1 ASN A  133  TYR A  142  1                                  10    
HELIX   11 AB2 TYR A  142  GLU A  147  1                                   6    
HELIX   12 AB3 ARG A  152  ASP A  170  1                                  19    
HELIX   13 AB4 GLY A  179  GLY A  184  5                                   6    
HELIX   14 AB5 LYS A  209  VAL A  221  1                                  13    
HELIX   15 AB6 PRO A  261  ASP A  263  5                                   3    
HELIX   16 AB7 GLN A  264  GLY A  274  1                                  11    
HELIX   17 AB8 SER A  275  HIS A  285  1                                  11    
SHEET    1 AA1 2 ILE A 150  PRO A 151  0                                        
SHEET    2 AA1 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1 AA2 5 ILE A 174  VAL A 177  0                                        
SHEET    2 AA2 5 MET A 191  THR A 196 -1  O  LEU A 194   N  THR A 176           
SHEET    3 AA2 5 ARG A 253  LEU A 259  1  O  ARG A 258   N  LEU A 195           
SHEET    4 AA2 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5 AA2 5 ILE A 224  LYS A 230 -1  N  SER A 229   O  MET A 236           
SHEET    1 AA3 2 PHE A 291  ILE A 293  0                                        
SHEET    2 AA3 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O   SER A  30                NA    NA A 405     1555   1555  2.41  
LINK         O   LYS A  60                NA    NA A 404     1555   1555  2.45  
LINK         O   LEU A  62                NA    NA A 404     1555   1555  2.59  
LINK         O   VAL A  65                NA    NA A 404     1555   1555  2.52  
LINK         O   THR A 101                NA    NA A 403     1555   1555  2.15  
LINK         O   VAL A 103                NA    NA A 403     1555   1555  2.52  
LINK         O   ILE A 106                NA    NA A 403     1555   1555  2.24  
LINK         OD1 ASP A 190                NA    NA A 402     1555   1555  2.41  
LINK         OD2 ASP A 192                NA    NA A 402     1555   1555  2.79  
LINK         OP1  DC D   3                NA    NA A 404     1555   1555  2.95  
LINK         OP1  DG P   9                NA    NA A 403     1555   1555  2.26  
LINK         O3'  DC P  10                 PA  42E A 407     1555   1555  1.52  
LINK         O11 PPV A 401                NA    NA A 402     1555   1555  3.10  
LINK         O21 PPV A 401                NA    NA A 402     1555   1555  2.40  
LINK         O21 PPV A 401                NA    NA A 406     1555   1555  2.26  
LINK        NA    NA A 402                 O2A 42E A 407     1555   1555  2.28  
LINK        NA    NA A 403                 O   HOH P 103     1555   1555  2.26  
LINK        NA    NA A 403                 O   HOH A 538     1555   1555  2.49  
LINK        NA    NA A 404                 O   HOH D 101     1555   1555  2.34  
LINK        NA    NA A 405                 O   HOH A 516     1555   1555  2.20  
LINK        NA    NA A 406                 O1A 42E A 407     1555   1555  2.82  
LINK         OG  SER A 171                NA    NA A 405     1555   1455  2.16  
LINK        NA    NA A 405                 O   HOH A 509     1555   1655  2.48  
LINK        NA    NA A 405                 O   HOH A 518     1555   1655  2.63  
CISPEP   1 GLY A  274    SER A  275          0        -4.57                     
SITE     1 AC1  8 SER A 180  ARG A 183  SER A 188  GLY A 189                    
SITE     2 AC1  8 ASP A 190   NA A 402   NA A 406  42E A 407                    
SITE     1 AC2  4 ASP A 190  ASP A 192  PPV A 401  42E A 407                    
SITE     1 AC3  6 THR A 101  VAL A 103  ILE A 106  HOH A 538                    
SITE     2 AC3  6  DG P   9  HOH P 103                                          
SITE     1 AC4  5 LYS A  60  LEU A  62  VAL A  65   DC D   3                    
SITE     2 AC4  5 HOH D 101                                                     
SITE     1 AC5  5 SER A  30  SER A 171  HOH A 509  HOH A 516                    
SITE     2 AC5  5 HOH A 518                                                     
SITE     1 AC6  2 PPV A 401  42E A 407                                          
SITE     1 AC7  8 ASP A 190  ASP A 192  TYR A 271  PPV A 401                    
SITE     2 AC7  8  NA A 402   NA A 406   DC P  10   DG T   6                    
CRYST1   54.697   79.325   54.947  90.00 107.03  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.018283  0.000000  0.005601        0.00000                         
SCALE2      0.000000  0.012606  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019034        0.00000