PDB Short entry for 5U8G HEADER TRANSFERASE,LYASE/DNA 14-DEC-16 5U8G TITLE DNA POLYMERASE BETA CRYSTALLIZED IN PEG 400 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA POLYMERASE; COMPND 5 EC: 2.7.7.7,4.2.99.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)- COMPND 9 3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA TEMPLATE STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(*GP*TP*CP*GP*G)-3'); COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: DNA DOWNSTREAM STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: DNA PRIMER STRAND, 10MER; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 OTHER_DETAILS: DNA DOWNSTREAM STRAND, 5MER; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, LYASE, DNA COMPLEX, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 6 04-OCT-23 5U8G 1 LINK REVDAT 5 04-DEC-19 5U8G 1 REMARK REVDAT 4 16-JAN-19 5U8G 1 SOURCE REVDAT 3 20-SEP-17 5U8G 1 REMARK REVDAT 2 17-MAY-17 5U8G 1 JRNL REVDAT 1 26-APR-17 5U8G 0 JRNL AUTH B.E.ECKENROTH,J.B.TOWLE-WEICKSEL,A.A.NEMEC,D.L.MURPHY, JRNL AUTH 2 J.B.SWEASY,S.DOUBLIE JRNL TITL REMOTE MUTATIONS INDUCE FUNCTIONAL CHANGES IN ACTIVE SITE JRNL TITL 2 RESIDUES OF HUMAN DNA POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 56 2363 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28402631 JRNL DOI 10.1021/ACS.BIOCHEM.6B01287 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 45604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.6802 - 6.4896 1.00 1380 187 0.1364 0.1532 REMARK 3 2 6.4896 - 5.2459 1.00 1394 149 0.1483 0.1623 REMARK 3 3 5.2459 - 4.6118 1.00 1392 143 0.1324 0.1486 REMARK 3 4 4.6118 - 4.2035 1.00 1389 139 0.1241 0.1433 REMARK 3 5 4.2035 - 3.9098 1.00 1405 150 0.1336 0.1871 REMARK 3 6 3.9098 - 3.6840 1.00 1356 188 0.1455 0.2110 REMARK 3 7 3.6840 - 3.5028 1.00 1422 159 0.1503 0.1983 REMARK 3 8 3.5028 - 3.3526 1.00 1400 104 0.1727 0.2079 REMARK 3 9 3.3526 - 3.2253 1.00 1369 165 0.1746 0.2046 REMARK 3 10 3.2253 - 3.1154 1.00 1404 188 0.1845 0.2841 REMARK 3 11 3.1154 - 3.0190 1.00 1375 147 0.1976 0.2942 REMARK 3 12 3.0190 - 2.9336 1.00 1411 148 0.2152 0.2700 REMARK 3 13 2.9336 - 2.8571 1.00 1391 124 0.2071 0.2413 REMARK 3 14 2.8571 - 2.7880 1.00 1423 140 0.2045 0.2904 REMARK 3 15 2.7880 - 2.7251 1.00 1370 164 0.2127 0.2883 REMARK 3 16 2.7251 - 2.6676 1.00 1375 179 0.1966 0.2815 REMARK 3 17 2.6676 - 2.6146 1.00 1402 153 0.2089 0.2355 REMARK 3 18 2.6146 - 2.5656 1.00 1388 153 0.1955 0.2550 REMARK 3 19 2.5656 - 2.5200 1.00 1348 171 0.2046 0.2469 REMARK 3 20 2.5200 - 2.4776 1.00 1407 141 0.2227 0.2743 REMARK 3 21 2.4776 - 2.4378 1.00 1436 151 0.2271 0.3061 REMARK 3 22 2.4378 - 2.4005 1.00 1361 155 0.2478 0.3276 REMARK 3 23 2.4005 - 2.3654 1.00 1424 129 0.2407 0.3152 REMARK 3 24 2.3654 - 2.3322 1.00 1383 148 0.2471 0.2878 REMARK 3 25 2.3322 - 2.3009 1.00 1420 150 0.2533 0.3055 REMARK 3 26 2.3009 - 2.2711 0.99 1355 149 0.2499 0.2730 REMARK 3 27 2.2711 - 2.2429 0.97 1343 150 0.2627 0.3244 REMARK 3 28 2.2429 - 2.2160 0.95 1323 151 0.2941 0.3381 REMARK 3 29 2.2160 - 2.1903 0.90 1247 142 0.3228 0.3721 REMARK 3 30 2.1903 - 2.1658 0.71 974 120 0.3226 0.3528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3228 REMARK 3 ANGLE : 0.495 4485 REMARK 3 CHIRALITY : 0.021 497 REMARK 3 PLANARITY : 0.002 473 REMARK 3 DIHEDRAL : 17.583 1249 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7579 -4.0275 9.4338 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.1913 REMARK 3 T33: 0.2466 T12: -0.0140 REMARK 3 T13: 0.0251 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.1058 L22: 2.5526 REMARK 3 L33: 3.4540 L12: -0.3230 REMARK 3 L13: 0.0606 L23: 0.1997 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0563 S13: -0.2398 REMARK 3 S21: -0.0725 S22: -0.0012 S23: -0.1465 REMARK 3 S31: 0.2745 S32: -0.0340 S33: -0.0157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4509 9.8853 29.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.2669 REMARK 3 T33: 0.2097 T12: -0.0099 REMARK 3 T13: 0.0115 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 5.5020 L22: 1.9010 REMARK 3 L33: 2.8336 L12: -0.7085 REMARK 3 L13: -0.4436 L23: 0.3568 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: -0.6768 S13: 0.0550 REMARK 3 S21: 0.1623 S22: 0.0296 S23: -0.1233 REMARK 3 S31: -0.1045 S32: 0.2757 S33: -0.0478 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6394 8.5689 18.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.2470 REMARK 3 T33: 0.2668 T12: -0.0118 REMARK 3 T13: 0.0099 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 5.7374 L22: 2.2444 REMARK 3 L33: 2.7816 L12: 0.3683 REMARK 3 L13: -0.4107 L23: -0.1651 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: -0.0397 S13: 0.0315 REMARK 3 S21: -0.0306 S22: -0.0533 S23: 0.2270 REMARK 3 S31: -0.0655 S32: -0.2074 S33: -0.0688 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9288 7.8586 -4.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.4570 T22: 0.7540 REMARK 3 T33: 0.3916 T12: -0.1849 REMARK 3 T13: 0.0164 T23: -0.1616 REMARK 3 L TENSOR REMARK 3 L11: 1.2681 L22: 2.3081 REMARK 3 L33: 2.9134 L12: 0.8874 REMARK 3 L13: -0.8653 L23: -1.1589 REMARK 3 S TENSOR REMARK 3 S11: -0.5739 S12: 0.8639 S13: -0.3745 REMARK 3 S21: -0.8504 S22: 0.7767 S23: -0.1087 REMARK 3 S31: 0.4078 S32: -0.3201 S33: -0.1581 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7097 13.9751 -3.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.2659 REMARK 3 T33: 0.2967 T12: 0.0253 REMARK 3 T13: 0.0131 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 9.1199 L22: 6.1994 REMARK 3 L33: 7.3308 L12: 0.3002 REMARK 3 L13: -3.8160 L23: -0.4967 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0714 S13: 0.7606 REMARK 3 S21: 0.1142 S22: 0.3354 S23: -0.0405 REMARK 3 S31: -0.2870 S32: 0.5872 S33: -0.3375 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1070 24.3211 15.1216 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.2021 REMARK 3 T33: 0.4108 T12: -0.0053 REMARK 3 T13: -0.0089 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.7230 L22: 3.4228 REMARK 3 L33: 2.0155 L12: 0.2932 REMARK 3 L13: -0.1854 L23: 0.8560 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: 0.0220 S13: 0.2348 REMARK 3 S21: 0.3149 S22: -0.2656 S23: -0.4396 REMARK 3 S31: 0.1456 S32: 0.0327 S33: 0.0647 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6241 25.6117 16.0033 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.2882 REMARK 3 T33: 0.3127 T12: -0.0097 REMARK 3 T13: -0.0470 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.1427 L22: 8.3171 REMARK 3 L33: 2.7155 L12: 0.1200 REMARK 3 L13: -0.3766 L23: 1.2035 REMARK 3 S TENSOR REMARK 3 S11: 0.2522 S12: -0.1800 S13: 0.2690 REMARK 3 S21: -0.6758 S22: -0.4809 S23: -0.0322 REMARK 3 S31: -0.3249 S32: -0.2166 S33: 0.2319 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3108 6.2424 -4.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.3816 T22: 0.3025 REMARK 3 T33: 0.2777 T12: 0.0375 REMARK 3 T13: -0.0101 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 3.4267 L22: 4.8285 REMARK 3 L33: 4.0069 L12: 0.5841 REMARK 3 L13: -1.0770 L23: -1.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.2505 S12: 0.7448 S13: 0.3108 REMARK 3 S21: 0.0170 S22: 0.1662 S23: 0.2093 REMARK 3 S31: -0.2288 S32: -0.2516 S33: -0.3143 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN PHENIX WITH I+/I- REMARK 4 REMARK 4 5U8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 104 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.166 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ISB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 400, 30 MM POTASSIUM SODIUM REMARK 280 TARTRATE, 1% 1,4-DIOXANE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.32950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 GLN A 207 REMARK 465 LYS A 244 REMARK 465 ASN A 245 REMARK 465 ASP A 246 REMARK 465 GLU A 247 REMARK 465 LYS A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CD CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 SER A 202 OG REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 ILE A 277 CD1 REMARK 470 LYS A 280 CD CE NZ REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 LYS A 289 CE NZ REMARK 470 VAL A 303 CG1 CG2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 SER A 315 OG REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 DC T 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 32.25 -76.14 REMARK 500 CYS A 178 -145.35 -101.11 REMARK 500 LYS A 209 61.08 -100.01 REMARK 500 ASN A 294 -161.18 -119.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 91.6 REMARK 620 3 VAL A 65 O 89.5 95.6 REMARK 620 4 HOH A 596 O 86.7 83.9 176.1 REMARK 620 5 HOH A 600 O 90.5 173.6 90.4 90.3 REMARK 620 6 DC D 3 OP1 172.6 95.7 91.2 92.7 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 92.8 REMARK 620 3 ILE A 106 O 91.8 87.2 REMARK 620 4 HOH A 644 O 78.9 85.8 168.1 REMARK 620 5 DG P 9 OP1 163.1 97.5 102.0 88.5 REMARK 620 6 HOH P 117 O 76.8 169.5 93.7 91.4 92.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U8I RELATED DB: PDB REMARK 900 RELATED ID: 5U8H RELATED DB: PDB DBREF 5U8G A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 5U8G T 1 16 PDB 5U8G 5U8G 1 16 DBREF 5U8G P 1 10 PDB 5U8G 5U8G 1 10 DBREF 5U8G D 1 5 PDB 5U8G 5U8G 1 5 SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC DA DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HET CL A 403 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 5 NA 2(NA 1+) FORMUL 7 CL CL 1- FORMUL 8 HOH *266(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 LYS A 127 1 7 HELIX 9 AA9 ASN A 128 LEU A 132 5 5 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 GLY A 179 ARG A 182 5 4 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 401 1555 1555 2.47 LINK O LEU A 62 NA NA A 401 1555 1555 2.45 LINK O VAL A 65 NA NA A 401 1555 1555 2.40 LINK O THR A 101 NA NA A 402 1555 1555 2.34 LINK O VAL A 103 NA NA A 402 1555 1555 2.49 LINK O ILE A 106 NA NA A 402 1555 1555 2.48 LINK NA NA A 401 O HOH A 596 1555 1555 2.79 LINK NA NA A 401 O HOH A 600 1555 1555 2.48 LINK NA NA A 401 OP1 DC D 3 1555 1555 2.68 LINK NA NA A 402 O HOH A 644 1555 1555 2.57 LINK NA NA A 402 OP1 DG P 9 1555 1555 2.33 LINK NA NA A 402 O HOH P 117 1555 1555 2.63 CISPEP 1 GLY A 274 SER A 275 0 1.51 SITE 1 AC1 6 LYS A 60 LEU A 62 VAL A 65 HOH A 596 SITE 2 AC1 6 HOH A 600 DC D 3 SITE 1 AC2 6 THR A 101 VAL A 103 ILE A 106 HOH A 644 SITE 2 AC2 6 DG P 9 HOH P 117 SITE 1 AC3 5 ALA A 32 ILE A 33 HIS A 34 LYS A 35 SITE 2 AC3 5 HOH D 109 CRYST1 54.104 78.659 54.721 90.00 104.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018483 0.000000 0.004694 0.00000 SCALE2 0.000000 0.012713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018855 0.00000