PDB Short entry for 5U9J HEADER SIGNALING PROTEIN 16-DEC-16 5U9J TITLE CRYSTAL STRUCTURE OF THE FKBP DOMAIN OF HUMAN ARYL HYDROCARBON TITLE 2 RECEPTOR-INTERACTING PROTEIN-LIKE 1 (AIPL1) COMPLEXED WITH GERANYL TITLE 3 GERANYL PYROPHOSHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR-INTERACTING PROTEIN-LIKE 1 COMPND 3 (AIPL1); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 2-161; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AIPL1, AIPL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS AIPL1, FKBP, CHAPERONE, PDE6, PHOTORECEPTOR, LCA, ISOPRENYL, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.YADAV,L.GAKHAR,Y.LIPING,N.O.ARTEMYEV REVDAT 6 04-OCT-23 5U9J 1 LINK REVDAT 5 11-DEC-19 5U9J 1 REMARK REVDAT 4 22-NOV-17 5U9J 1 REMARK ATOM REVDAT 3 23-AUG-17 5U9J 1 JRNL REVDAT 2 09-AUG-17 5U9J 1 JRNL REVDAT 1 26-JUL-17 5U9J 0 JRNL AUTH R.P.YADAV,L.GAKHAR,L.YU,N.O.ARTEMYEV JRNL TITL UNIQUE STRUCTURAL FEATURES OF THE AIPL1-FKBP DOMAIN THAT JRNL TITL 2 SUPPORT PRENYL LIPID BINDING AND UNDERLIE PROTEIN JRNL TITL 3 MALFUNCTION IN BLINDNESS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6536 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28739921 JRNL DOI 10.1073/PNAS.1704782114 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.820 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 20398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1594 - 4.9353 0.94 3001 108 0.1998 0.2494 REMARK 3 2 4.9353 - 3.9183 0.93 2931 119 0.1748 0.1997 REMARK 3 3 3.9183 - 3.4233 0.89 2814 158 0.2098 0.2629 REMARK 3 4 3.4233 - 3.1104 0.97 3036 150 0.2201 0.2923 REMARK 3 5 3.1104 - 2.8875 0.99 3100 131 0.2421 0.2898 REMARK 3 6 2.8875 - 2.7173 0.98 3114 131 0.2327 0.2856 REMARK 3 7 2.7173 - 2.5812 0.97 3066 168 0.2348 0.3218 REMARK 3 8 2.5812 - 2.4689 0.96 3006 146 0.2471 0.3034 REMARK 3 9 2.4689 - 2.3739 0.95 2943 162 0.2700 0.3588 REMARK 3 10 2.3739 - 2.2919 0.95 3024 136 0.2885 0.3541 REMARK 3 11 2.2919 - 2.2203 0.71 2219 99 0.4818 0.5375 REMARK 3 12 2.2203 - 2.1568 0.82 2548 121 0.4274 0.4443 REMARK 3 13 2.1568 - 2.1000 0.94 2994 140 0.3514 0.4024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2498 REMARK 3 ANGLE : 1.290 3385 REMARK 3 CHIRALITY : 0.065 377 REMARK 3 PLANARITY : 0.009 435 REMARK 3 DIHEDRAL : 14.898 1467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.152 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U9A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CITRATE 20%(W/V) PEG 4000 REMARK 280 20% (V/V) 2-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.67000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.67000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 SER A 160 REMARK 465 ASP A 161 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 SER B 160 REMARK 465 ASP B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 THR A 114 OG1 CG2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 HIS A 130 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ASN B 8 CG OD1 ND2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 THR B 114 OG1 CG2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 91 O HOH B 405 1.45 REMARK 500 HH22 ARG A 46 O HOH A 408 1.53 REMARK 500 OD2 ASP B 50 HH TYR B 97 1.58 REMARK 500 HH21 ARG B 46 O HOH B 409 1.59 REMARK 500 HD1 HIS A 82 O HOH A 413 1.60 REMARK 500 O HOH B 467 O HOH B 469 2.04 REMARK 500 O HOH B 443 O HOH B 459 2.05 REMARK 500 O ALA B 158 O HOH B 401 2.09 REMARK 500 O HOH A 427 O HOH A 447 2.14 REMARK 500 OG1 THR A 77 O HOH A 401 2.15 REMARK 500 O HOH B 468 O HOH B 471 2.16 REMARK 500 O LEU B 24 O HOH B 402 2.16 REMARK 500 O LEU A 154 O HOH A 402 2.17 REMARK 500 O HOH A 459 O HOH A 463 2.17 REMARK 500 O HOH A 447 O HOH A 454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 46 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 25 159.24 -47.93 REMARK 500 PHE A 27 48.26 -97.87 REMARK 500 ASP A 43 -177.26 -62.91 REMARK 500 LYS A 68 89.68 -151.40 REMARK 500 HIS A 82 -7.63 75.01 REMARK 500 GLN A 109 -167.71 -68.66 REMARK 500 GLN A 155 137.08 -172.98 REMARK 500 PRO B 25 164.26 -49.41 REMARK 500 PHE B 27 49.48 -100.95 REMARK 500 ASP B 43 -176.41 -65.19 REMARK 500 HIS B 82 -5.32 72.47 REMARK 500 GLN B 155 138.86 -173.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 466 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 475 DISTANCE = 5.90 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GER A 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE2 REMARK 620 2 ARG B 46 O 119.9 REMARK 620 3 HOH B 452 O 89.2 120.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GER A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GER B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U9A RELATED DB: PDB REMARK 900 RELATED ID: 5U9I RELATED DB: PDB REMARK 900 RELATED ID: 5U9K RELATED DB: PDB DBREF 5U9J A 2 161 UNP Q9NZN9 AIPL1_HUMAN 2 161 DBREF 5U9J B 2 161 UNP Q9NZN9 AIPL1_HUMAN 2 161 SEQADV 5U9J MET A -7 UNP Q9NZN9 INITIATING METHIONINE SEQADV 5U9J GLY A -6 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A -5 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A -4 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A -3 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A -2 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A -1 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS A 0 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J GLY A 1 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J MET B -7 UNP Q9NZN9 INITIATING METHIONINE SEQADV 5U9J GLY B -6 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B -5 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B -4 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B -3 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B -2 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B -1 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J HIS B 0 UNP Q9NZN9 EXPRESSION TAG SEQADV 5U9J GLY B 1 UNP Q9NZN9 EXPRESSION TAG SEQRES 1 A 169 MET GLY HIS HIS HIS HIS HIS HIS GLY ASP ALA ALA LEU SEQRES 2 A 169 LEU LEU ASN VAL GLU GLY VAL LYS LYS THR ILE LEU HIS SEQRES 3 A 169 GLY GLY THR GLY GLU LEU PRO ASN PHE ILE THR GLY SER SEQRES 4 A 169 ARG VAL ILE PHE HIS PHE ARG THR MET LYS CYS ASP GLU SEQRES 5 A 169 GLU ARG THR VAL ILE ASP ASP SER ARG GLN VAL GLY GLN SEQRES 6 A 169 PRO MET HIS ILE ILE ILE GLY ASN MET PHE LYS LEU GLU SEQRES 7 A 169 VAL TRP GLU ILE LEU LEU THR SER MET ARG VAL HIS GLU SEQRES 8 A 169 VAL ALA GLU PHE TRP CYS ASP THR ILE HIS THR GLY VAL SEQRES 9 A 169 TYR PRO ILE LEU SER ARG SER LEU ARG GLN MET ALA GLN SEQRES 10 A 169 GLY LYS ASP PRO THR GLU TRP HIS VAL HIS THR CYS GLY SEQRES 11 A 169 LEU ALA ASN MET PHE ALA TYR HIS THR LEU GLY TYR GLU SEQRES 12 A 169 ASP LEU ASP GLU LEU GLN LYS GLU PRO GLN PRO LEU VAL SEQRES 13 A 169 PHE VAL ILE GLU LEU LEU GLN VAL ASP ALA PRO SER ASP SEQRES 1 B 169 MET GLY HIS HIS HIS HIS HIS HIS GLY ASP ALA ALA LEU SEQRES 2 B 169 LEU LEU ASN VAL GLU GLY VAL LYS LYS THR ILE LEU HIS SEQRES 3 B 169 GLY GLY THR GLY GLU LEU PRO ASN PHE ILE THR GLY SER SEQRES 4 B 169 ARG VAL ILE PHE HIS PHE ARG THR MET LYS CYS ASP GLU SEQRES 5 B 169 GLU ARG THR VAL ILE ASP ASP SER ARG GLN VAL GLY GLN SEQRES 6 B 169 PRO MET HIS ILE ILE ILE GLY ASN MET PHE LYS LEU GLU SEQRES 7 B 169 VAL TRP GLU ILE LEU LEU THR SER MET ARG VAL HIS GLU SEQRES 8 B 169 VAL ALA GLU PHE TRP CYS ASP THR ILE HIS THR GLY VAL SEQRES 9 B 169 TYR PRO ILE LEU SER ARG SER LEU ARG GLN MET ALA GLN SEQRES 10 B 169 GLY LYS ASP PRO THR GLU TRP HIS VAL HIS THR CYS GLY SEQRES 11 B 169 LEU ALA ASN MET PHE ALA TYR HIS THR LEU GLY TYR GLU SEQRES 12 B 169 ASP LEU ASP GLU LEU GLN LYS GLU PRO GLN PRO LEU VAL SEQRES 13 B 169 PHE VAL ILE GLU LEU LEU GLN VAL ASP ALA PRO SER ASP HET GER A 301 43 HET IPA A 302 12 HET NA A 303 1 HET GER B 301 53 HETNAM GER GERAN-8-YL GERAN HETNAM IPA ISOPROPYL ALCOHOL HETNAM NA SODIUM ION HETSYN IPA 2-PROPANOL FORMUL 3 GER 2(C20 H34) FORMUL 4 IPA C3 H8 O FORMUL 5 NA NA 1+ FORMUL 7 HOH *141(H2 O) HELIX 1 AA1 SER A 52 GLY A 56 1 5 HELIX 2 AA2 GLU A 70 THR A 77 1 8 HELIX 3 AA3 ASP A 90 GLY A 95 1 6 HELIX 4 AA4 VAL A 96 GLN A 109 1 14 HELIX 5 AA5 GLU A 115 HIS A 130 1 16 HELIX 6 AA6 TYR A 134 GLU A 143 1 10 HELIX 7 AA7 SER B 52 GLY B 56 1 5 HELIX 8 AA8 GLU B 70 THR B 77 1 8 HELIX 9 AA9 ASP B 90 GLY B 95 1 6 HELIX 10 AB1 VAL B 96 GLN B 109 1 14 HELIX 11 AB2 GLU B 115 HIS B 130 1 16 HELIX 12 AB3 TYR B 134 GLU B 143 1 10 SHEET 1 AA1 5 VAL A 12 HIS A 18 0 SHEET 2 AA1 5 VAL A 84 CYS A 89 -1 O GLU A 86 N THR A 15 SHEET 3 AA1 5 LEU A 147 ASP A 157 -1 O LEU A 147 N CYS A 89 SHEET 4 AA1 5 ARG A 32 MET A 40 -1 N ARG A 38 O VAL A 150 SHEET 5 AA1 5 VAL A 48 ASP A 51 -1 O ILE A 49 N THR A 39 SHEET 1 AA2 5 VAL A 12 HIS A 18 0 SHEET 2 AA2 5 VAL A 84 CYS A 89 -1 O GLU A 86 N THR A 15 SHEET 3 AA2 5 LEU A 147 ASP A 157 -1 O LEU A 147 N CYS A 89 SHEET 4 AA2 5 ARG A 32 MET A 40 -1 N ARG A 38 O VAL A 150 SHEET 5 AA2 5 MET A 59 ILE A 62 -1 O ILE A 61 N VAL A 33 SHEET 1 AA3 5 VAL B 12 HIS B 18 0 SHEET 2 AA3 5 VAL B 84 CYS B 89 -1 O GLU B 86 N THR B 15 SHEET 3 AA3 5 LEU B 147 ASP B 157 -1 O PHE B 149 N PHE B 87 SHEET 4 AA3 5 ARG B 32 MET B 40 -1 N ARG B 38 O VAL B 150 SHEET 5 AA3 5 VAL B 48 ASP B 51 -1 O ILE B 49 N THR B 39 SHEET 1 AA4 5 VAL B 12 HIS B 18 0 SHEET 2 AA4 5 VAL B 84 CYS B 89 -1 O GLU B 86 N THR B 15 SHEET 3 AA4 5 LEU B 147 ASP B 157 -1 O PHE B 149 N PHE B 87 SHEET 4 AA4 5 ARG B 32 MET B 40 -1 N ARG B 38 O VAL B 150 SHEET 5 AA4 5 MET B 59 ILE B 62 -1 O MET B 59 N PHE B 35 LINK OE2 GLU A 152 NA NA A 303 1555 1555 2.89 LINK NA NA A 303 O ARG B 46 1555 1555 2.80 LINK NA NA A 303 O HOH B 452 1555 1555 2.42 SITE 1 AC1 6 PHE A 35 MET A 59 ILE A 61 TRP A 72 SITE 2 AC1 6 PHE A 149 ILE A 151 SITE 1 AC2 7 HIS A 36 PHE A 37 ARG A 38 ARG A 53 SITE 2 AC2 7 VAL A 150 GLU A 152 ARG B 38 SITE 1 AC3 5 GLU A 152 ARG B 38 MET B 40 ARG B 46 SITE 2 AC3 5 HOH B 452 SITE 1 AC4 8 VAL B 71 TRP B 72 HIS B 93 LEU B 100 SITE 2 AC4 8 LEU B 104 PHE B 149 ILE B 151 HOH B 418 CRYST1 69.340 51.170 106.970 90.00 93.09 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014422 0.000000 0.000780 0.00000 SCALE2 0.000000 0.019543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009362 0.00000