PDB Short entry for 5UDI HEADER RNA BINDING PROTEIN 27-DEC-16 5UDI TITLE IFIT1 MONOMERIC MUTANT (L457E/L464E) WITH M7GPPP-AAAA (SYN AND ANTI TITLE 2 CONFORMATIONS OF CAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IFIT-1,INTERFERON-INDUCED 56 KDA PROTEIN,P56; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-D(*(GTA))-R(P*AP*AP*A)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFIT1, G10P1, IFI56, IFNAI1, ISG56; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644 KEYWDS MRNA CAP, N7-METHYLGUANOSINE-TRIPHOSPHATE RNA, TETRATRICOPEPTIDE KEYWDS 2 REPEAT, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.M.ABBAS,S.MARTINEZ-MONTERO,M.J.DAMHA,B.NAGAR REVDAT 6 06-MAR-24 5UDI 1 LINK REVDAT 5 08-JAN-20 5UDI 1 SEQADV REVDAT 4 22-NOV-17 5UDI 1 REMARK REVDAT 3 22-MAR-17 5UDI 1 JRNL REVDAT 2 15-MAR-17 5UDI 1 JRNL REVDAT 1 01-MAR-17 5UDI 0 JRNL AUTH Y.M.ABBAS,B.T.LAUDENBACH,S.MARTINEZ-MONTERO,R.CENCIC, JRNL AUTH 2 M.HABJAN,A.PICHLMAIR,M.J.DAMHA,J.PELLETIER,B.NAGAR JRNL TITL STRUCTURE OF HUMAN IFIT1 WITH CAPPED RNA REVEALS ADAPTABLE JRNL TITL 2 MRNA BINDING AND MECHANISMS FOR SENSING N1 AND N2 RIBOSE JRNL TITL 3 2'-O METHYLATIONS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E2106 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28251928 JRNL DOI 10.1073/PNAS.1612444114 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2142 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 81034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1358 - 4.8492 1.00 2891 161 0.1693 0.1860 REMARK 3 2 4.8492 - 3.8499 1.00 2755 153 0.1298 0.1374 REMARK 3 3 3.8499 - 3.3636 1.00 2736 139 0.1506 0.1598 REMARK 3 4 3.3636 - 3.0562 1.00 2678 156 0.1680 0.1643 REMARK 3 5 3.0562 - 2.8372 1.00 2676 151 0.1641 0.2012 REMARK 3 6 2.8372 - 2.6699 1.00 2681 129 0.1584 0.1985 REMARK 3 7 2.6699 - 2.5362 1.00 2679 143 0.1487 0.1595 REMARK 3 8 2.5362 - 2.4258 1.00 2661 127 0.1407 0.1795 REMARK 3 9 2.4258 - 2.3325 1.00 2682 120 0.1361 0.1730 REMARK 3 10 2.3325 - 2.2520 1.00 2679 131 0.1406 0.1615 REMARK 3 11 2.2520 - 2.1816 1.00 2625 141 0.1387 0.1827 REMARK 3 12 2.1816 - 2.1192 1.00 2654 135 0.1477 0.1724 REMARK 3 13 2.1192 - 2.0634 1.00 2651 131 0.1525 0.1889 REMARK 3 14 2.0634 - 2.0131 1.00 2638 151 0.1552 0.1827 REMARK 3 15 2.0131 - 1.9673 1.00 2604 146 0.1532 0.1807 REMARK 3 16 1.9673 - 1.9255 1.00 2653 126 0.1539 0.1735 REMARK 3 17 1.9255 - 1.8870 1.00 2619 148 0.1624 0.2138 REMARK 3 18 1.8870 - 1.8513 1.00 2650 126 0.1632 0.1923 REMARK 3 19 1.8513 - 1.8183 1.00 2639 120 0.1659 0.1942 REMARK 3 20 1.8183 - 1.7875 1.00 2646 141 0.1789 0.1911 REMARK 3 21 1.7875 - 1.7586 1.00 2582 142 0.1757 0.1766 REMARK 3 22 1.7586 - 1.7316 1.00 2637 120 0.1782 0.1778 REMARK 3 23 1.7316 - 1.7061 1.00 2633 147 0.1903 0.2089 REMARK 3 24 1.7061 - 1.6821 1.00 2631 123 0.1967 0.2618 REMARK 3 25 1.6821 - 1.6593 1.00 2628 129 0.2161 0.2381 REMARK 3 26 1.6593 - 1.6378 1.00 2569 159 0.2125 0.2248 REMARK 3 27 1.6378 - 1.6173 1.00 2622 139 0.2294 0.2881 REMARK 3 28 1.6173 - 1.5978 1.00 2617 118 0.2397 0.2351 REMARK 3 29 1.5978 - 1.5792 1.00 2620 146 0.2504 0.2764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4128 REMARK 3 ANGLE : 1.579 5614 REMARK 3 CHIRALITY : 0.077 598 REMARK 3 PLANARITY : 0.011 700 REMARK 3 DIHEDRAL : 13.751 2550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4096 18.3381-160.6010 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.2037 REMARK 3 T33: 0.2112 T12: 0.0060 REMARK 3 T13: -0.0124 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1794 L22: 0.3169 REMARK 3 L33: 0.3105 L12: 0.3727 REMARK 3 L13: 0.0046 L23: -0.1752 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0686 S13: 0.0432 REMARK 3 S21: -0.0487 S22: -0.0340 S23: -0.0561 REMARK 3 S31: 0.0091 S32: 0.0951 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9026 28.5326-155.6182 REMARK 3 T TENSOR REMARK 3 T11: 0.2116 T22: 0.1834 REMARK 3 T33: 0.2559 T12: 0.0023 REMARK 3 T13: -0.0118 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4893 L22: 0.4614 REMARK 3 L33: 0.2333 L12: 0.1853 REMARK 3 L13: 0.1205 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: -0.0121 S13: 0.1887 REMARK 3 S21: -0.0261 S22: 0.0086 S23: 0.0649 REMARK 3 S31: -0.1382 S32: -0.0861 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1678 6.1170-153.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1583 REMARK 3 T33: 0.1643 T12: 0.0204 REMARK 3 T13: 0.0022 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.4192 L22: 0.4940 REMARK 3 L33: 0.6989 L12: 0.2676 REMARK 3 L13: 0.1417 L23: 0.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0312 S13: -0.0085 REMARK 3 S21: 0.0606 S22: 0.0092 S23: -0.0065 REMARK 3 S31: 0.0484 S32: -0.0288 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3357 -7.3760-176.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.1901 REMARK 3 T33: 0.2054 T12: -0.0224 REMARK 3 T13: -0.0224 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.1733 L22: 0.0880 REMARK 3 L33: 0.0700 L12: -0.0956 REMARK 3 L13: -0.1018 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.0763 S13: -0.0473 REMARK 3 S21: 0.0180 S22: -0.0565 S23: 0.1243 REMARK 3 S31: 0.1499 S32: -0.0124 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0330 -1.8383-181.9524 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.2299 REMARK 3 T33: 0.1707 T12: -0.0322 REMARK 3 T13: 0.0004 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0487 L22: 0.1343 REMARK 3 L33: 0.1642 L12: -0.0907 REMARK 3 L13: -0.0665 L23: -0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.1878 S12: 0.2203 S13: 0.1089 REMARK 3 S21: -0.0711 S22: 0.1353 S23: 0.1200 REMARK 3 S31: -0.0156 S32: -0.0447 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7196 -5.1457-177.7884 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.2162 REMARK 3 T33: 0.1813 T12: 0.0213 REMARK 3 T13: -0.0019 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.0831 L22: 0.0924 REMARK 3 L33: 0.0263 L12: -0.1291 REMARK 3 L13: 0.0604 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 0.0836 S13: 0.0961 REMARK 3 S21: -0.0366 S22: 0.0597 S23: -0.0529 REMARK 3 S31: 0.1281 S32: 0.1065 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8145 -16.7590-173.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.2568 REMARK 3 T33: 0.2462 T12: 0.0850 REMARK 3 T13: -0.0186 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 0.2905 L22: 0.2756 REMARK 3 L33: 0.1086 L12: -0.1053 REMARK 3 L13: -0.0092 L23: -0.1844 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0796 S13: -0.0830 REMARK 3 S21: 0.0822 S22: 0.0556 S23: -0.0096 REMARK 3 S31: 0.2603 S32: 0.1345 S33: 0.0050 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7329 -32.8160-170.1991 REMARK 3 T TENSOR REMARK 3 T11: 0.3508 T22: 0.1957 REMARK 3 T33: 0.4149 T12: 0.0035 REMARK 3 T13: -0.1365 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.1376 L22: 0.4840 REMARK 3 L33: 1.2288 L12: 0.2072 REMARK 3 L13: 0.2348 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.3288 S12: -0.1936 S13: -0.3710 REMARK 3 S21: -0.1206 S22: 0.0630 S23: 0.2565 REMARK 3 S31: 0.2601 S32: -0.3019 S33: 0.3397 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2296 -4.3235-165.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.2007 REMARK 3 T33: 0.1983 T12: -0.0099 REMARK 3 T13: 0.0059 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: -0.0032 L22: 0.0016 REMARK 3 L33: 0.0202 L12: -0.0002 REMARK 3 L13: 0.0083 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.1766 S13: -0.0334 REMARK 3 S21: 0.1461 S22: 0.0550 S23: 0.0184 REMARK 3 S31: 0.2082 S32: 0.1511 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND RESID ' 1 ' REMARK 3 ORIGIN FOR THE GROUP (A): 34.1725 8.3840-159.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.1842 T22: 0.1664 REMARK 3 T33: 0.1933 T12: 0.0028 REMARK 3 T13: -0.0001 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.0002 REMARK 3 L33: 0.0044 L12: -0.0065 REMARK 3 L13: 0.0041 L23: 0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.0361 S13: 0.0389 REMARK 3 S21: 0.1107 S22: 0.0518 S23: -0.0868 REMARK 3 S31: 0.0288 S32: -0.0633 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.579 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 - 32 % PEG 200, 0.1 M TRIS PH 8.1, REMARK 280 200 MM CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.57850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.57850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.57850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.57850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 754 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 858 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 888 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 905 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 923 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 468 REMARK 465 ASP A 469 REMARK 465 PHE A 470 REMARK 465 GLU A 471 REMARK 465 ASN A 472 REMARK 465 SER A 473 REMARK 465 VAL A 474 REMARK 465 ARG A 475 REMARK 465 GLN A 476 REMARK 465 GLY A 477 REMARK 465 PRO A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 83 H ASN A 88 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 341 CB VAL A 341 CG2 -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 A B 2 C6 - N1 - C2 ANGL. DEV. = -7.5 DEGREES REMARK 500 A B 2 N1 - C2 - N3 ANGL. DEV. = 4.7 DEGREES REMARK 500 A B 2 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 A B 2 N1 - C6 - N6 ANGL. DEV. = -4.5 DEGREES REMARK 500 A B 3 N1 - C2 - N3 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B 3 C2 - N3 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 A B 3 C4 - C5 - C6 ANGL. DEV. = 3.2 DEGREES REMARK 500 A B 3 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 A B 4 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 A B 4 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 68.35 -113.99 REMARK 500 ASN A 88 -6.44 72.33 REMARK 500 LYS A 433 95.53 -167.69 REMARK 500 LEU A 435 40.78 -101.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 47 OD2 52.5 REMARK 620 3 HOH A 601 O 80.4 124.5 REMARK 620 4 HOH A 606 O 125.5 80.1 114.3 REMARK 620 5 HOH A 626 O 106.3 74.2 156.7 80.4 REMARK 620 6 HOH A 651 O 85.0 91.2 52.9 69.2 148.2 REMARK 620 7 HOH A 768 O 70.9 111.4 70.4 162.8 90.4 121.4 REMARK 620 8 HOH A 921 O 155.0 151.2 82.0 78.2 83.7 98.4 86.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 77 OE1 REMARK 620 2 GLU A 77 OE2 51.1 REMARK 620 3 HOH A 716 O 141.2 167.1 REMARK 620 4 HOH A 861 O 77.0 122.5 70.0 REMARK 620 5 HOH A 908 O 83.7 109.1 73.6 84.6 REMARK 620 6 HOH A 914 O 93.3 91.2 91.6 66.1 150.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UDJ RELATED DB: PDB REMARK 900 RELATED ID: 5UDK RELATED DB: PDB REMARK 900 RELATED ID: 5UDL RELATED DB: PDB DBREF 5UDI A 1 478 UNP P09914 IFIT1_HUMAN 1 478 DBREF 5UDI B 1 4 PDB 5UDI 5UDI 1 4 SEQADV 5UDI SER A 0 UNP P09914 EXPRESSION TAG SEQADV 5UDI GLU A 457 UNP P09914 LEU 457 ENGINEERED MUTATION SEQADV 5UDI GLU A 464 UNP P09914 LEU 464 ENGINEERED MUTATION SEQRES 1 A 479 SER MET SER THR ASN GLY ASP ASP HIS GLN VAL LYS ASP SEQRES 2 A 479 SER LEU GLU GLN LEU ARG CYS HIS PHE THR TRP GLU LEU SEQRES 3 A 479 SER ILE ASP ASP ASP GLU MET PRO ASP LEU GLU ASN ARG SEQRES 4 A 479 VAL LEU ASP GLN ILE GLU PHE LEU ASP THR LYS TYR SER SEQRES 5 A 479 VAL GLY ILE HIS ASN LEU LEU ALA TYR VAL LYS HIS LEU SEQRES 6 A 479 LYS GLY GLN ASN GLU GLU ALA LEU LYS SER LEU LYS GLU SEQRES 7 A 479 ALA GLU ASN LEU MET GLN GLU GLU HIS ASP ASN GLN ALA SEQRES 8 A 479 ASN VAL ARG SER LEU VAL THR TRP GLY ASN PHE ALA TRP SEQRES 9 A 479 MET TYR TYR HIS MET GLY ARG LEU ALA GLU ALA GLN THR SEQRES 10 A 479 TYR LEU ASP LYS VAL GLU ASN ILE CYS LYS LYS LEU SER SEQRES 11 A 479 ASN PRO PHE ARG TYR ARG MET GLU CYS PRO GLU ILE ASP SEQRES 12 A 479 CYS GLU GLU GLY TRP ALA LEU LEU LYS CYS GLY GLY LYS SEQRES 13 A 479 ASN TYR GLU ARG ALA LYS ALA CYS PHE GLU LYS VAL LEU SEQRES 14 A 479 GLU VAL ASP PRO GLU ASN PRO GLU SER SER ALA GLY TYR SEQRES 15 A 479 ALA ILE SER ALA TYR ARG LEU ASP GLY PHE LYS LEU ALA SEQRES 16 A 479 THR LYS ASN HIS LYS PRO PHE SER LEU LEU PRO LEU ARG SEQRES 17 A 479 GLN ALA VAL ARG LEU ASN PRO ASP ASN GLY TYR ILE LYS SEQRES 18 A 479 VAL LEU LEU ALA LEU LYS LEU GLN ASP GLU GLY GLN GLU SEQRES 19 A 479 ALA GLU GLY GLU LYS TYR ILE GLU GLU ALA LEU ALA ASN SEQRES 20 A 479 MET SER SER GLN THR TYR VAL PHE ARG TYR ALA ALA LYS SEQRES 21 A 479 PHE TYR ARG ARG LYS GLY SER VAL ASP LYS ALA LEU GLU SEQRES 22 A 479 LEU LEU LYS LYS ALA LEU GLN GLU THR PRO THR SER VAL SEQRES 23 A 479 LEU LEU HIS HIS GLN ILE GLY LEU CYS TYR LYS ALA GLN SEQRES 24 A 479 MET ILE GLN ILE LYS GLU ALA THR LYS GLY GLN PRO ARG SEQRES 25 A 479 GLY GLN ASN ARG GLU LYS LEU ASP LYS MET ILE ARG SER SEQRES 26 A 479 ALA ILE PHE HIS PHE GLU SER ALA VAL GLU LYS LYS PRO SEQRES 27 A 479 THR PHE GLU VAL ALA HIS LEU ASP LEU ALA ARG MET TYR SEQRES 28 A 479 ILE GLU ALA GLY ASN HIS ARG LYS ALA GLU GLU ASN PHE SEQRES 29 A 479 GLN LYS LEU LEU CYS MET LYS PRO VAL VAL GLU GLU THR SEQRES 30 A 479 MET GLN ASP ILE HIS PHE HIS TYR GLY ARG PHE GLN GLU SEQRES 31 A 479 PHE GLN LYS LYS SER ASP VAL ASN ALA ILE ILE HIS TYR SEQRES 32 A 479 LEU LYS ALA ILE LYS ILE GLU GLN ALA SER LEU THR ARG SEQRES 33 A 479 ASP LYS SER ILE ASN SER LEU LYS LYS LEU VAL LEU ARG SEQRES 34 A 479 LYS LEU ARG ARG LYS ALA LEU ASP LEU GLU SER LEU SER SEQRES 35 A 479 LEU LEU GLY PHE VAL TYR LYS LEU GLU GLY ASN MET ASN SEQRES 36 A 479 GLU ALA GLU GLU TYR TYR GLU ARG ALA GLU ARG LEU ALA SEQRES 37 A 479 ALA ASP PHE GLU ASN SER VAL ARG GLN GLY PRO SEQRES 1 B 4 GTA A A A HET GTA B 1 156 HET PGE A 501 24 HET CA A 502 1 HET CA A 503 1 HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION HETSYN GTA 7-METHYL-GPPPA FORMUL 2 GTA C21 H30 N10 O17 P3 1+ FORMUL 3 PGE C6 H14 O4 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *394(H2 O) HELIX 1 AA1 HIS A 8 LEU A 17 1 10 HELIX 2 AA2 CYS A 19 TRP A 23 5 5 HELIX 3 AA3 ASP A 28 ASP A 30 5 3 HELIX 4 AA4 GLU A 31 LEU A 46 1 16 HELIX 5 AA5 SER A 51 LYS A 65 1 15 HELIX 6 AA6 GLN A 67 HIS A 86 1 20 HELIX 7 AA7 ARG A 93 GLY A 109 1 17 HELIX 8 AA8 ARG A 110 LEU A 128 1 19 HELIX 9 AA9 CYS A 138 CYS A 152 1 15 HELIX 10 AB1 GLY A 153 LYS A 155 5 3 HELIX 11 AB2 ASN A 156 GLU A 169 1 14 HELIX 12 AB3 ASN A 174 LYS A 192 1 19 HELIX 13 AB4 SER A 202 ASN A 213 1 12 HELIX 14 AB5 ASN A 216 GLU A 230 1 15 HELIX 15 AB6 GLN A 232 ALA A 245 1 14 HELIX 16 AB7 SER A 249 GLY A 265 1 17 HELIX 17 AB8 SER A 266 THR A 281 1 16 HELIX 18 AB9 SER A 284 THR A 306 1 23 HELIX 19 AC1 ARG A 311 LYS A 336 1 26 HELIX 20 AC2 PHE A 339 ALA A 353 1 15 HELIX 21 AC3 ASN A 355 CYS A 368 1 14 HELIX 22 AC4 GLU A 375 GLN A 391 1 17 HELIX 23 AC5 SER A 394 ILE A 408 1 15 HELIX 24 AC6 SER A 412 LYS A 433 1 22 HELIX 25 AC7 ASP A 436 GLU A 450 1 15 HELIX 26 AC8 ASN A 452 ALA A 467 1 16 LINK O3BAGTA B 1 P A B 2 1555 1555 1.59 LINK O3BBGTA B 1 P A B 2 1555 1555 1.59 LINK OD1 ASP A 47 CA CA A 502 1555 1555 2.50 LINK OD2 ASP A 47 CA CA A 502 1555 1555 2.49 LINK OE1 GLU A 77 CA CA A 503 1555 1555 2.33 LINK OE2 GLU A 77 CA CA A 503 1555 1555 2.75 LINK CA CA A 502 O HOH A 601 1555 7551 2.82 LINK CA CA A 502 O HOH A 606 1555 7551 2.44 LINK CA CA A 502 O HOH A 626 1555 1555 2.47 LINK CA CA A 502 O HOH A 651 1555 7551 2.15 LINK CA CA A 502 O HOH A 768 1555 1555 2.29 LINK CA CA A 502 O HOH A 921 1555 7551 2.31 LINK CA CA A 503 O HOH A 716 1555 7551 2.43 LINK CA CA A 503 O HOH A 861 1555 1555 2.44 LINK CA CA A 503 O HOH A 908 1555 1555 2.76 LINK CA CA A 503 O HOH A 914 1555 1555 2.62 SITE 1 AC1 3 HIS A 63 PHE A 445 HOH A 730 SITE 1 AC2 3 ASP A 47 HOH A 626 HOH A 768 SITE 1 AC3 4 GLU A 77 HOH A 861 HOH A 908 HOH A 914 CRYST1 111.715 111.715 93.157 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008951 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010735 0.00000