PDB Short entry for 5UDK HEADER RNA BINDING PROTEIN 27-DEC-16 5UDK TITLE IFIT1 MONOMERIC MUTANT (L457E/L464E) WITH PPP-AAAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IFIT-1,INTERFERON-INDUCED 56 KDA PROTEIN,P56; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-D(*(ATP))-R(P*AP*AP*A)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFIT1, G10P1, IFI56, IFNAI1, ISG56; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644 KEYWDS MRNA CAP, TRIPHOSPHATE RNA, TETRATRICOPEPTIDE REPEAT, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.M.ABBAS,S.MARTINEZ-MONTERO,M.J.DAMHA,B.NAGAR REVDAT 5 06-MAR-24 5UDK 1 LINK REVDAT 4 08-JAN-20 5UDK 1 SEQADV REVDAT 3 22-MAR-17 5UDK 1 JRNL REVDAT 2 15-MAR-17 5UDK 1 JRNL REVDAT 1 01-MAR-17 5UDK 0 JRNL AUTH Y.M.ABBAS,B.T.LAUDENBACH,S.MARTINEZ-MONTERO,R.CENCIC, JRNL AUTH 2 M.HABJAN,A.PICHLMAIR,M.J.DAMHA,J.PELLETIER,B.NAGAR JRNL TITL STRUCTURE OF HUMAN IFIT1 WITH CAPPED RNA REVEALS ADAPTABLE JRNL TITL 2 MRNA BINDING AND MECHANISMS FOR SENSING N1 AND N2 RIBOSE JRNL TITL 3 2'-O METHYLATIONS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E2106 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28251928 JRNL DOI 10.1073/PNAS.1612444114 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2142 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 71911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2648 - 4.8227 1.00 2984 167 0.1614 0.1535 REMARK 3 2 4.8227 - 3.8286 1.00 2820 155 0.1330 0.1470 REMARK 3 3 3.8286 - 3.3448 1.00 2808 147 0.1595 0.1732 REMARK 3 4 3.3448 - 3.0391 1.00 2755 164 0.1845 0.1973 REMARK 3 5 3.0391 - 2.8213 1.00 2764 145 0.1801 0.2091 REMARK 3 6 2.8213 - 2.6550 1.00 2766 135 0.1668 0.1969 REMARK 3 7 2.6550 - 2.5220 1.00 2756 141 0.1593 0.1780 REMARK 3 8 2.5220 - 2.4122 1.00 2767 132 0.1525 0.1878 REMARK 3 9 2.4122 - 2.3194 1.00 2736 131 0.1516 0.1818 REMARK 3 10 2.3194 - 2.2393 1.00 2745 125 0.1510 0.1937 REMARK 3 11 2.2393 - 2.1693 1.00 2720 146 0.1546 0.1706 REMARK 3 12 2.1693 - 2.1073 1.00 2760 137 0.1617 0.1957 REMARK 3 13 2.1073 - 2.0518 1.00 2699 149 0.1619 0.1897 REMARK 3 14 2.0518 - 2.0018 1.00 2699 166 0.1644 0.1975 REMARK 3 15 2.0018 - 1.9563 1.00 2721 127 0.1791 0.2177 REMARK 3 16 1.9563 - 1.9146 1.00 2706 141 0.1725 0.1856 REMARK 3 17 1.9146 - 1.8763 1.00 2711 142 0.1757 0.2153 REMARK 3 18 1.8763 - 1.8409 1.00 2735 126 0.1736 0.1880 REMARK 3 19 1.8409 - 1.8081 1.00 2709 145 0.1781 0.2117 REMARK 3 20 1.8081 - 1.7774 1.00 2698 140 0.1797 0.2002 REMARK 3 21 1.7774 - 1.7487 1.00 2724 125 0.1852 0.2428 REMARK 3 22 1.7487 - 1.7218 1.00 2677 161 0.1925 0.2140 REMARK 3 23 1.7218 - 1.6965 0.99 2686 125 0.2028 0.2364 REMARK 3 24 1.6965 - 1.6726 0.98 2657 135 0.2271 0.2785 REMARK 3 25 1.6726 - 1.6500 0.95 2548 153 0.2420 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4058 REMARK 3 ANGLE : 1.166 5473 REMARK 3 CHIRALITY : 0.058 583 REMARK 3 PLANARITY : 0.008 689 REMARK 3 DIHEDRAL : 14.079 2502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3584 17.9347-160.4156 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1782 REMARK 3 T33: 0.1971 T12: 0.0148 REMARK 3 T13: -0.0098 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0857 L22: 0.2382 REMARK 3 L33: 0.1582 L12: 0.2387 REMARK 3 L13: -0.0020 L23: -0.2434 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.0473 S13: 0.0780 REMARK 3 S21: -0.0948 S22: -0.0636 S23: -0.0570 REMARK 3 S31: 0.0188 S32: 0.0382 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3173 28.6776-155.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1346 REMARK 3 T33: 0.2401 T12: 0.0029 REMARK 3 T13: -0.0093 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3332 L22: 0.4300 REMARK 3 L33: 0.4238 L12: 0.1039 REMARK 3 L13: -0.0670 L23: -0.0017 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.0401 S13: 0.2388 REMARK 3 S21: -0.0188 S22: -0.0156 S23: 0.0892 REMARK 3 S31: -0.0838 S32: -0.0913 S33: 0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0032 6.3031-152.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1309 REMARK 3 T33: 0.1404 T12: 0.0155 REMARK 3 T13: -0.0010 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1847 L22: 0.3996 REMARK 3 L33: 0.6723 L12: 0.2070 REMARK 3 L13: 0.1053 L23: -0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0144 S13: 0.0023 REMARK 3 S21: 0.0401 S22: 0.0067 S23: 0.0051 REMARK 3 S31: 0.0266 S32: -0.0415 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7689 -7.1746-176.0455 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.1942 REMARK 3 T33: 0.1916 T12: -0.0134 REMARK 3 T13: -0.0248 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.1161 L22: 0.0518 REMARK 3 L33: 0.0163 L12: -0.0949 REMARK 3 L13: 0.0017 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0844 S13: -0.0745 REMARK 3 S21: 0.0370 S22: -0.0057 S23: 0.1145 REMARK 3 S31: 0.0802 S32: -0.0076 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1288 -2.0184-182.0304 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2297 REMARK 3 T33: 0.1448 T12: -0.0460 REMARK 3 T13: -0.0072 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.0511 L22: 0.1145 REMARK 3 L33: 0.0777 L12: -0.0499 REMARK 3 L13: -0.0217 L23: -0.0114 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: 0.1419 S13: -0.0299 REMARK 3 S21: -0.0736 S22: 0.1264 S23: -0.0097 REMARK 3 S31: -0.0143 S32: -0.0770 S33: -0.0048 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9342 -5.1026-177.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.2035 REMARK 3 T33: 0.1517 T12: 0.0121 REMARK 3 T13: -0.0043 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.0463 L22: 0.0593 REMARK 3 L33: 0.0600 L12: -0.0875 REMARK 3 L13: 0.0078 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 0.1019 S13: 0.1094 REMARK 3 S21: -0.0919 S22: 0.0547 S23: -0.0182 REMARK 3 S31: 0.0637 S32: 0.0867 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0311 -16.8847-173.5321 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.2309 REMARK 3 T33: 0.1995 T12: 0.0828 REMARK 3 T13: -0.0212 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.1441 REMARK 3 L33: 0.0926 L12: -0.0723 REMARK 3 L13: 0.0098 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0952 S13: -0.0619 REMARK 3 S21: 0.0301 S22: 0.0275 S23: -0.0255 REMARK 3 S31: 0.2091 S32: 0.0975 S33: 0.0617 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9992 -32.8537-170.2051 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.1837 REMARK 3 T33: 0.3697 T12: 0.0228 REMARK 3 T13: -0.1395 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.2087 L22: 0.2918 REMARK 3 L33: 0.8319 L12: 0.2432 REMARK 3 L13: -0.0345 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.2929 S12: -0.1077 S13: -0.3410 REMARK 3 S21: -0.0682 S22: 0.0154 S23: 0.1866 REMARK 3 S31: 0.2082 S32: -0.1534 S33: 0.2798 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5638 -4.3028-165.3957 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.1814 REMARK 3 T33: 0.1536 T12: -0.0066 REMARK 3 T13: 0.0057 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0069 L22: 0.0043 REMARK 3 L33: 0.0181 L12: -0.0200 REMARK 3 L13: 0.0143 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.1191 S13: -0.0127 REMARK 3 S21: 0.0761 S22: 0.0104 S23: -0.0028 REMARK 3 S31: 0.2669 S32: 0.1185 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND RESID ' 1 ' REMARK 3 ORIGIN FOR THE GROUP (A): 35.8253 5.6857-162.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1361 REMARK 3 T33: 0.1835 T12: 0.0147 REMARK 3 T13: -0.0011 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0091 L22: 0.0294 REMARK 3 L33: 0.0045 L12: -0.0016 REMARK 3 L13: 0.0043 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.1190 S13: 0.1164 REMARK 3 S21: 0.0283 S22: 0.1119 S23: 0.0501 REMARK 3 S31: 0.0844 S32: -0.1133 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 - 32 % PEG 200, 0.1 M TRIS PH 8.1, REMARK 280 200 MM CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.58600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.58600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.58600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.58600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 712 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 817 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 469 REMARK 465 PHE A 470 REMARK 465 GLU A 471 REMARK 465 ASN A 472 REMARK 465 SER A 473 REMARK 465 VAL A 474 REMARK 465 ARG A 475 REMARK 465 GLN A 476 REMARK 465 GLY A 477 REMARK 465 PRO A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 A B 3 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 A B 4 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 67.87 -118.54 REMARK 500 HIS A 86 29.18 -143.05 REMARK 500 LEU A 435 55.51 -111.47 REMARK 500 ALA A 467 72.80 -63.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 47 OD2 53.3 REMARK 620 3 HOH A 612 O 86.2 133.7 REMARK 620 4 HOH A 619 O 128.2 80.1 119.6 REMARK 620 5 HOH A 722 O 108.8 74.2 148.6 73.1 REMARK 620 6 HOH A 765 O 72.4 107.6 74.4 152.9 83.9 REMARK 620 7 HOH A 858 O 89.4 87.8 68.3 65.1 136.7 139.4 REMARK 620 8 HOH A 897 O 154.0 150.3 75.0 77.3 80.9 85.2 99.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 77 OE1 REMARK 620 2 GLU A 77 OE2 49.8 REMARK 620 3 HOH A 854 O 81.8 123.2 REMARK 620 4 HOH A 859 O 83.4 118.3 75.3 REMARK 620 5 HOH A 867 O 94.9 86.5 67.7 142.8 REMARK 620 6 HOH A 912 O 145.4 163.7 66.5 75.7 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UDI RELATED DB: PDB REMARK 900 RELATED ID: 5UDJ RELATED DB: PDB REMARK 900 RELATED ID: 5UDL RELATED DB: PDB DBREF 5UDK A 1 478 UNP P09914 IFIT1_HUMAN 1 478 DBREF 5UDK B 1 4 PDB 5UDK 5UDK 1 4 SEQADV 5UDK SER A 0 UNP P09914 EXPRESSION TAG SEQADV 5UDK GLU A 457 UNP P09914 LEU 457 ENGINEERED MUTATION SEQADV 5UDK GLU A 464 UNP P09914 LEU 464 ENGINEERED MUTATION SEQRES 1 A 479 SER MET SER THR ASN GLY ASP ASP HIS GLN VAL LYS ASP SEQRES 2 A 479 SER LEU GLU GLN LEU ARG CYS HIS PHE THR TRP GLU LEU SEQRES 3 A 479 SER ILE ASP ASP ASP GLU MET PRO ASP LEU GLU ASN ARG SEQRES 4 A 479 VAL LEU ASP GLN ILE GLU PHE LEU ASP THR LYS TYR SER SEQRES 5 A 479 VAL GLY ILE HIS ASN LEU LEU ALA TYR VAL LYS HIS LEU SEQRES 6 A 479 LYS GLY GLN ASN GLU GLU ALA LEU LYS SER LEU LYS GLU SEQRES 7 A 479 ALA GLU ASN LEU MET GLN GLU GLU HIS ASP ASN GLN ALA SEQRES 8 A 479 ASN VAL ARG SER LEU VAL THR TRP GLY ASN PHE ALA TRP SEQRES 9 A 479 MET TYR TYR HIS MET GLY ARG LEU ALA GLU ALA GLN THR SEQRES 10 A 479 TYR LEU ASP LYS VAL GLU ASN ILE CYS LYS LYS LEU SER SEQRES 11 A 479 ASN PRO PHE ARG TYR ARG MET GLU CYS PRO GLU ILE ASP SEQRES 12 A 479 CYS GLU GLU GLY TRP ALA LEU LEU LYS CYS GLY GLY LYS SEQRES 13 A 479 ASN TYR GLU ARG ALA LYS ALA CYS PHE GLU LYS VAL LEU SEQRES 14 A 479 GLU VAL ASP PRO GLU ASN PRO GLU SER SER ALA GLY TYR SEQRES 15 A 479 ALA ILE SER ALA TYR ARG LEU ASP GLY PHE LYS LEU ALA SEQRES 16 A 479 THR LYS ASN HIS LYS PRO PHE SER LEU LEU PRO LEU ARG SEQRES 17 A 479 GLN ALA VAL ARG LEU ASN PRO ASP ASN GLY TYR ILE LYS SEQRES 18 A 479 VAL LEU LEU ALA LEU LYS LEU GLN ASP GLU GLY GLN GLU SEQRES 19 A 479 ALA GLU GLY GLU LYS TYR ILE GLU GLU ALA LEU ALA ASN SEQRES 20 A 479 MET SER SER GLN THR TYR VAL PHE ARG TYR ALA ALA LYS SEQRES 21 A 479 PHE TYR ARG ARG LYS GLY SER VAL ASP LYS ALA LEU GLU SEQRES 22 A 479 LEU LEU LYS LYS ALA LEU GLN GLU THR PRO THR SER VAL SEQRES 23 A 479 LEU LEU HIS HIS GLN ILE GLY LEU CYS TYR LYS ALA GLN SEQRES 24 A 479 MET ILE GLN ILE LYS GLU ALA THR LYS GLY GLN PRO ARG SEQRES 25 A 479 GLY GLN ASN ARG GLU LYS LEU ASP LYS MET ILE ARG SER SEQRES 26 A 479 ALA ILE PHE HIS PHE GLU SER ALA VAL GLU LYS LYS PRO SEQRES 27 A 479 THR PHE GLU VAL ALA HIS LEU ASP LEU ALA ARG MET TYR SEQRES 28 A 479 ILE GLU ALA GLY ASN HIS ARG LYS ALA GLU GLU ASN PHE SEQRES 29 A 479 GLN LYS LEU LEU CYS MET LYS PRO VAL VAL GLU GLU THR SEQRES 30 A 479 MET GLN ASP ILE HIS PHE HIS TYR GLY ARG PHE GLN GLU SEQRES 31 A 479 PHE GLN LYS LYS SER ASP VAL ASN ALA ILE ILE HIS TYR SEQRES 32 A 479 LEU LYS ALA ILE LYS ILE GLU GLN ALA SER LEU THR ARG SEQRES 33 A 479 ASP LYS SER ILE ASN SER LEU LYS LYS LEU VAL LEU ARG SEQRES 34 A 479 LYS LEU ARG ARG LYS ALA LEU ASP LEU GLU SER LEU SER SEQRES 35 A 479 LEU LEU GLY PHE VAL TYR LYS LEU GLU GLY ASN MET ASN SEQRES 36 A 479 GLU ALA GLU GLU TYR TYR GLU ARG ALA GLU ARG LEU ALA SEQRES 37 A 479 ALA ASP PHE GLU ASN SER VAL ARG GLN GLY PRO SEQRES 1 B 4 ATP A A A HET ATP B 1 42 HET PGE A 501 24 HET PEG A 502 17 HET EDO A 503 10 HET PGE A 504 48 HET CA A 505 1 HET CA A 506 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 PGE 2(C6 H14 O4) FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO C2 H6 O2 FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *335(H2 O) HELIX 1 AA1 HIS A 8 GLU A 15 1 8 HELIX 2 AA2 CYS A 19 TRP A 23 5 5 HELIX 3 AA3 ASP A 28 ASP A 30 5 3 HELIX 4 AA4 GLU A 31 LEU A 46 1 16 HELIX 5 AA5 SER A 51 LYS A 65 1 15 HELIX 6 AA6 GLN A 67 GLU A 85 1 19 HELIX 7 AA7 ARG A 93 GLY A 109 1 17 HELIX 8 AA8 ARG A 110 LEU A 128 1 19 HELIX 9 AA9 CYS A 138 CYS A 152 1 15 HELIX 10 AB1 GLY A 153 LYS A 155 5 3 HELIX 11 AB2 ASN A 156 GLU A 169 1 14 HELIX 12 AB3 ASN A 174 LYS A 192 1 19 HELIX 13 AB4 SER A 202 ASN A 213 1 12 HELIX 14 AB5 ASN A 216 GLU A 230 1 15 HELIX 15 AB6 GLN A 232 ALA A 245 1 14 HELIX 16 AB7 SER A 249 GLY A 265 1 17 HELIX 17 AB8 SER A 266 THR A 281 1 16 HELIX 18 AB9 SER A 284 THR A 306 1 23 HELIX 19 AC1 ARG A 311 LYS A 336 1 26 HELIX 20 AC2 PHE A 339 GLY A 354 1 16 HELIX 21 AC3 ASN A 355 CYS A 368 1 14 HELIX 22 AC4 GLU A 375 GLN A 391 1 17 HELIX 23 AC5 SER A 394 ILE A 408 1 15 HELIX 24 AC6 SER A 412 LYS A 433 1 22 HELIX 25 AC7 ASP A 436 GLY A 451 1 16 HELIX 26 AC8 ASN A 452 ALA A 467 1 16 LINK O3' ATP B 1 P A B 2 1555 1555 1.57 LINK OD1 ASP A 47 CA CA A 505 1555 1555 2.46 LINK OD2 ASP A 47 CA CA A 505 1555 1555 2.49 LINK OE1 GLU A 77 CA CA A 506 1555 1555 2.34 LINK OE2 GLU A 77 CA CA A 506 1555 1555 2.81 LINK CA CA A 505 O HOH A 612 1555 7551 2.47 LINK CA CA A 505 O HOH A 619 1555 7551 2.39 LINK CA CA A 505 O HOH A 722 1555 1555 2.35 LINK CA CA A 505 O HOH A 765 1555 1555 2.31 LINK CA CA A 505 O HOH A 858 1555 1555 2.22 LINK CA CA A 505 O HOH A 897 1555 7551 2.37 LINK CA CA A 506 O HOH A 854 1555 1555 2.48 LINK CA CA A 506 O HOH A 859 1555 1555 2.60 LINK CA CA A 506 O HOH A 867 1555 1555 2.52 LINK CA CA A 506 O HOH A 912 1555 1555 2.50 SITE 1 AC1 9 GLN A 42 LEU A 46 THR A 48 TRP A 147 SITE 2 AC1 9 LYS A 151 PEG A 502 HOH A 616 ATP B 1 SITE 3 AC1 9 HOH B 102 SITE 1 AC2 4 ALA A 179 ASN A 216 PGE A 501 EDO A 503 SITE 1 AC3 9 ASP A 47 ASP A 215 ASN A 216 GLY A 217 SITE 2 AC3 9 TYR A 218 SER A 248 SER A 249 PEG A 502 SITE 3 AC3 9 HOH A 832 SITE 1 AC4 7 HIS A 63 HIS A 107 PHE A 445 HOH A 628 SITE 2 AC4 7 HOH A 632 HOH A 711 HOH A 846 SITE 1 AC5 4 ASP A 47 HOH A 722 HOH A 765 HOH A 858 SITE 1 AC6 5 GLU A 77 HOH A 854 HOH A 859 HOH A 867 SITE 2 AC6 5 HOH A 912 CRYST1 112.432 112.432 93.172 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008894 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010733 0.00000