PDB Short entry for 5UDZ HEADER RNA BINDING PROTEIN/RNA 29-DEC-16 5UDZ TITLE HUMAN LIN28A IN COMPLEX WITH LET-7F-1 MICRORNA PRE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-187; COMPND 5 SYNONYM: LIN-28A,ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LET-7F-1 PRE-ELEMENT; COMPND 9 CHAIN: V, W; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIN28A, CSDD1, LIN28, ZCCHC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS MICRORNA, LET-7, LIN28, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,L.WANG,P.SLIZ REVDAT 5 04-OCT-23 5UDZ 1 REMARK REVDAT 4 04-DEC-19 5UDZ 1 REMARK REVDAT 3 13-SEP-17 5UDZ 1 REMARK REVDAT 2 29-MAR-17 5UDZ 1 JRNL REVDAT 1 22-MAR-17 5UDZ 0 JRNL AUTH L.WANG,Y.NAM,A.K.LEE,C.YU,K.ROTH,C.CHEN,E.M.RANSEY,P.SLIZ JRNL TITL LIN28 ZINC KNUCKLE DOMAIN IS REQUIRED AND SUFFICIENT TO JRNL TITL 2 INDUCE LET-7 OLIGOURIDYLATION. JRNL REF CELL REP V. 18 2664 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28297670 JRNL DOI 10.1016/J.CELREP.2017.02.044 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.NAM,C.CHEN,R.I.GREGORY,J.J.CHOU,P.SLIZ REMARK 1 TITL MOLECULAR BASIS FOR INTERACTION OF LET-7 MICRORNAS WITH REMARK 1 TITL 2 LIN28. REMARK 1 REF CELL V. 147 1080 2011 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 22078496 REMARK 1 DOI 10.1016/J.CELL.2011.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 40541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5238 - 4.8155 0.96 2734 137 0.1672 0.1772 REMARK 3 2 4.8155 - 3.8241 0.98 2734 138 0.1277 0.1444 REMARK 3 3 3.8241 - 3.3413 0.99 2756 149 0.1300 0.1899 REMARK 3 4 3.3413 - 3.0360 0.99 2778 141 0.1461 0.1635 REMARK 3 5 3.0360 - 2.8186 1.00 2769 144 0.1635 0.2244 REMARK 3 6 2.8186 - 2.6525 1.00 2747 143 0.1681 0.1876 REMARK 3 7 2.6525 - 2.5197 1.00 2789 140 0.1712 0.2324 REMARK 3 8 2.5197 - 2.4100 1.00 2765 142 0.1853 0.2150 REMARK 3 9 2.4100 - 2.3173 1.00 2758 143 0.1776 0.2464 REMARK 3 10 2.3173 - 2.2373 1.00 2774 149 0.1852 0.2271 REMARK 3 11 2.2373 - 2.1674 1.00 2771 141 0.1953 0.2326 REMARK 3 12 2.1674 - 2.1055 1.00 2747 143 0.2105 0.2617 REMARK 3 13 2.1055 - 2.0500 1.00 2790 145 0.2301 0.2636 REMARK 3 14 2.0500 - 2.0000 0.96 2635 139 0.2588 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3310 REMARK 3 ANGLE : 1.277 4682 REMARK 3 CHIRALITY : 0.070 530 REMARK 3 PLANARITY : 0.007 432 REMARK 3 DIHEDRAL : 14.221 1375 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 48.0106 6.8764 13.1883 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.1390 REMARK 3 T33: 0.0870 T12: 0.0122 REMARK 3 T13: -0.0116 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0829 L22: -0.0367 REMARK 3 L33: -0.0330 L12: -0.0017 REMARK 3 L13: 0.1170 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.0372 S13: -0.0339 REMARK 3 S21: 0.0101 S22: 0.0105 S23: -0.0067 REMARK 3 S31: -0.0158 S32: -0.0285 S33: 0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000224834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09052 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61890 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M CITRATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.80750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.40375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.21125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 GLY B 181 REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 LYS B 187 REMARK 465 U V 25 REMARK 465 A W 24 REMARK 465 U W 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G W 7 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G W 7 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 408 O HOH W 190 1.82 REMARK 500 O HOH B 412 O HOH B 418 1.87 REMARK 500 O HOH B 420 O HOH B 438 1.87 REMARK 500 OE1 GLU A 121 O HOH A 301 1.97 REMARK 500 O HOH A 429 O HOH V 182 1.98 REMARK 500 O HOH A 409 O HOH A 423 2.00 REMARK 500 O HOH W 120 O HOH W 190 2.02 REMARK 500 NZ LYS A 159 O HOH A 302 2.04 REMARK 500 O HOH V 120 O HOH V 190 2.09 REMARK 500 O HOH A 374 O HOH A 427 2.11 REMARK 500 O HOH A 320 O HOH A 394 2.11 REMARK 500 O HOH V 138 O HOH V 196 2.13 REMARK 500 O3' G W 23 O HOH W 101 2.13 REMARK 500 O HOH A 312 O HOH A 420 2.14 REMARK 500 O HOH V 103 O HOH V 109 2.15 REMARK 500 O HOH W 114 O HOH W 178 2.16 REMARK 500 O3' G W 7 O HOH W 102 2.18 REMARK 500 OP1 U V 13 O HOH V 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH V 186 O HOH W 131 3645 2.08 REMARK 500 O HOH A 394 O HOH B 320 3655 2.17 REMARK 500 O HOH A 307 O HOH B 384 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U V 11 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 G W 3 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 125 -0.71 72.06 REMARK 500 LYS B 125 -4.72 72.08 REMARK 500 ALA B 178 11.70 -62.13 REMARK 500 GLN B 179 -63.56 -124.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 112.3 REMARK 620 3 HIS A 147 NE2 103.2 98.5 REMARK 620 4 CYS A 152 SG 114.9 113.7 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 161 SG REMARK 620 2 CYS A 164 SG 112.3 REMARK 620 3 HIS A 169 NE2 106.4 99.1 REMARK 620 4 CYS A 174 SG 109.7 117.0 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 CYS B 142 SG 116.8 REMARK 620 3 HIS B 147 NE2 100.1 104.0 REMARK 620 4 CYS B 152 SG 108.3 118.3 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 CYS B 164 SG 113.7 REMARK 620 3 HIS B 169 NE2 105.3 100.8 REMARK 620 4 CYS B 174 SG 108.6 118.1 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 5UDZ A 31 187 UNP Q9H9Z2 LN28A_HUMAN 31 187 DBREF 5UDZ B 31 187 UNP Q9H9Z2 LN28A_HUMAN 31 187 DBREF 5UDZ V 1 25 PDB 5UDZ 5UDZ 1 25 DBREF 5UDZ W 1 25 PDB 5UDZ 5UDZ 1 25 SEQADV 5UDZ A UNP Q9H9Z2 LYS 127 DELETION SEQADV 5UDZ A UNP Q9H9Z2 SER 128 DELETION SEQADV 5UDZ A UNP Q9H9Z2 MET 129 DELETION SEQADV 5UDZ A UNP Q9H9Z2 GLN 130 DELETION SEQADV 5UDZ A UNP Q9H9Z2 LYS 131 DELETION SEQADV 5UDZ A UNP Q9H9Z2 ARG 132 DELETION SEQADV 5UDZ A UNP Q9H9Z2 ARG 133 DELETION SEQADV 5UDZ A UNP Q9H9Z2 SER 134 DELETION SEQADV 5UDZ A UNP Q9H9Z2 LYS 135 DELETION SEQADV 5UDZ B UNP Q9H9Z2 LYS 127 DELETION SEQADV 5UDZ B UNP Q9H9Z2 SER 128 DELETION SEQADV 5UDZ B UNP Q9H9Z2 MET 129 DELETION SEQADV 5UDZ B UNP Q9H9Z2 GLN 130 DELETION SEQADV 5UDZ B UNP Q9H9Z2 LYS 131 DELETION SEQADV 5UDZ B UNP Q9H9Z2 ARG 132 DELETION SEQADV 5UDZ B UNP Q9H9Z2 ARG 133 DELETION SEQADV 5UDZ B UNP Q9H9Z2 SER 134 DELETION SEQADV 5UDZ B UNP Q9H9Z2 LYS 135 DELETION SEQRES 1 A 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 A 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 A 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 A 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 A 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 A 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 A 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 A 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 A 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 A 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE SER HIS SEQRES 11 A 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 A 148 SER ALA GLN GLY LYS SEQRES 1 B 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 B 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 B 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 B 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 B 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 B 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 B 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 B 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 B 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 B 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE SER HIS SEQRES 11 B 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 B 148 SER ALA GLN GLY LYS SEQRES 1 V 25 G G G G U A G U G A U U U SEQRES 2 V 25 U A C C C U G G A G A U SEQRES 1 W 25 G G G G U A G U G A U U U SEQRES 2 W 25 U A C C C U G G A G A U HET ZN A 200 1 HET ZN A 201 1 HET ZN B 200 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *517(H2 O) HELIX 1 AA1 SER A 77 LEU A 79 5 3 HELIX 2 AA2 GLY A 111 VAL A 115 5 5 HELIX 3 AA3 HIS A 148 CYS A 152 5 5 HELIX 4 AA4 MET A 170 SER A 173 5 4 HELIX 5 AA5 CYS A 174 GLN A 179 1 6 HELIX 6 AA6 SER B 77 LEU B 79 5 3 HELIX 7 AA7 GLY B 111 VAL B 115 5 5 HELIX 8 AA8 HIS B 148 CYS B 152 5 5 HELIX 9 AA9 MET B 170 CYS B 174 5 5 SHEET 1 AA1 6 LEU A 38 ASN A 48 0 SHEET 2 AA1 6 PHE A 53 ARG A 61 -1 O SER A 57 N ILE A 43 SHEET 3 AA1 6 VAL A 64 HIS A 75 -1 O VAL A 70 N MET A 58 SHEET 4 AA1 6 GLY A 103 THR A 110 1 O LEU A 104 N PHE A 73 SHEET 5 AA1 6 ALA A 92 SER A 100 -1 N GLU A 94 O THR A 110 SHEET 6 AA1 6 LEU A 38 ASN A 48 -1 N GLY A 40 O PHE A 95 SHEET 1 AA2 6 LEU B 38 ASN B 48 0 SHEET 2 AA2 6 PHE B 53 ARG B 61 -1 O SER B 57 N ILE B 43 SHEET 3 AA2 6 VAL B 64 HIS B 75 -1 O VAL B 72 N LEU B 56 SHEET 4 AA2 6 GLY B 103 THR B 110 1 O SER B 106 N PHE B 73 SHEET 5 AA2 6 ALA B 92 SER B 100 -1 N SER B 100 O GLY B 103 SHEET 6 AA2 6 LEU B 38 ASN B 48 -1 N LEU B 38 O PHE B 97 LINK SG CYS A 139 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 142 ZN ZN A 200 1555 1555 2.37 LINK NE2 HIS A 147 ZN ZN A 200 1555 1555 2.00 LINK SG CYS A 152 ZN ZN A 200 1555 1555 2.25 LINK SG CYS A 161 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 164 ZN ZN A 201 1555 1555 2.36 LINK NE2 HIS A 169 ZN ZN A 201 1555 1555 2.02 LINK SG CYS A 174 ZN ZN A 201 1555 1555 2.32 LINK SG CYS B 139 ZN ZN B 200 1555 1555 2.34 LINK SG CYS B 142 ZN ZN B 200 1555 1555 2.15 LINK NE2 HIS B 147 ZN ZN B 200 1555 1555 2.03 LINK SG CYS B 152 ZN ZN B 200 1555 1555 2.43 LINK SG CYS B 161 ZN ZN B 201 1555 1555 2.25 LINK SG CYS B 164 ZN ZN B 201 1555 1555 2.34 LINK NE2 HIS B 169 ZN ZN B 201 1555 1555 2.03 LINK SG CYS B 174 ZN ZN B 201 1555 1555 2.38 CISPEP 1 ASP A 67 PRO A 68 0 2.30 CISPEP 2 ASP B 67 PRO B 68 0 2.15 SITE 1 AC1 4 CYS A 139 CYS A 142 HIS A 147 CYS A 152 SITE 1 AC2 4 CYS A 161 CYS A 164 HIS A 169 CYS A 174 SITE 1 AC3 4 CYS B 139 CYS B 142 HIS B 147 CYS B 152 SITE 1 AC4 4 CYS B 161 CYS B 164 HIS B 169 CYS B 174 CRYST1 76.429 76.429 105.615 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009468 0.00000