PDB Short entry for 5UV6 HEADER CELL ADHESION 19-FEB-17 5UV6 TITLE CRYSTAL STRUCTURE OF HUMAN OPIOID BINDING PROTEIN/CELL ADHESION TITLE 2 MOLECULE LIKE (OPCML) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPIOID-BINDING PROTEIN/CELL ADHESION MOLECULE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OPIOID-BINDING CELL ADHESION MOLECULE,IGLON FAMILY MEMBER 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OPCML, IGLON1, OBCAM; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS GPI-ANCHORED IG DOMAIN CELL ADHESION MOLECULE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.BIRTLEY,L.J.STERN,H.GABRA,E.ZANINI REVDAT 4 29-JUL-20 5UV6 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-DEC-19 5UV6 1 REMARK REVDAT 2 31-JUL-19 5UV6 1 JRNL REVDAT 1 21-MAR-18 5UV6 0 JRNL AUTH J.R.BIRTLEY,M.ALOMARY,E.ZANINI,J.ANTONY,Z.MABEN,G.C.WEAVER, JRNL AUTH 2 C.VON ARX,M.MURA,A.T.MARINHO,H.LU,E.V.N.MORECROFT,E.KARALI, JRNL AUTH 3 N.E.CHAYEN,E.W.TATE,M.JUREWICZ,L.J.STERN,C.RECCHI,H.GABRA JRNL TITL INACTIVATING MUTATIONS AND X-RAY CRYSTAL STRUCTURE OF THE JRNL TITL 2 TUMOR SUPPRESSOR OPCML REVEAL CANCER-ASSOCIATED FUNCTIONS. JRNL REF NAT COMMUN V. 10 3134 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31316070 JRNL DOI 10.1038/S41467-019-10966-8 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.327 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 33372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.133 REMARK 3 FREE R VALUE TEST SET COUNT : 1713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.4431 - 6.0024 0.96 2847 142 0.2479 0.2692 REMARK 3 2 6.0024 - 4.7918 0.96 2692 149 0.2189 0.2591 REMARK 3 3 4.7918 - 4.1942 0.96 2639 155 0.2232 0.2106 REMARK 3 4 4.1942 - 3.8145 0.95 2602 143 0.2586 0.2611 REMARK 3 5 3.8145 - 3.5431 0.96 2621 141 0.2902 0.3673 REMARK 3 6 3.5431 - 3.3355 0.95 2594 138 0.3148 0.3051 REMARK 3 7 3.3355 - 3.1694 0.99 2676 145 0.3407 0.3797 REMARK 3 8 3.1694 - 3.0320 0.99 2675 139 0.3643 0.3583 REMARK 3 9 3.0320 - 2.9158 0.99 2676 150 0.3779 0.4213 REMARK 3 10 2.9158 - 2.8155 0.99 2640 166 0.4179 0.4165 REMARK 3 11 2.8155 - 2.7278 0.98 2674 137 0.4210 0.4589 REMARK 3 12 2.7278 - 2.6500 0.87 2323 108 0.5062 0.5788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.531 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4400 REMARK 3 ANGLE : 0.882 6001 REMARK 3 CHIRALITY : 0.054 732 REMARK 3 PLANARITY : 0.005 753 REMARK 3 DIHEDRAL : 11.419 2585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4023 27.0496 296.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.6848 T22: 0.3467 REMARK 3 T33: 0.3928 T12: 0.0530 REMARK 3 T13: 0.0552 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 9.2744 L22: 4.7763 REMARK 3 L33: 5.0749 L12: 2.8614 REMARK 3 L13: -0.6424 L23: -0.7529 REMARK 3 S TENSOR REMARK 3 S11: -0.5481 S12: 0.5920 S13: -0.3312 REMARK 3 S21: -0.8950 S22: 0.1630 S23: -0.3347 REMARK 3 S31: 0.0957 S32: 0.0693 S33: 0.3113 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9714 12.3552 259.5118 REMARK 3 T TENSOR REMARK 3 T11: 0.9905 T22: 0.9486 REMARK 3 T33: 0.6391 T12: -0.1391 REMARK 3 T13: 0.2857 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 6.8891 L22: 4.1580 REMARK 3 L33: 6.7840 L12: -4.0127 REMARK 3 L13: -7.2541 L23: 2.9786 REMARK 3 S TENSOR REMARK 3 S11: -0.4471 S12: -0.2644 S13: -0.1766 REMARK 3 S21: 0.8570 S22: -0.0387 S23: 0.3177 REMARK 3 S31: 0.3708 S32: -0.3160 S33: 0.5283 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.6877 -1.2760 242.3897 REMARK 3 T TENSOR REMARK 3 T11: 0.7232 T22: 0.6630 REMARK 3 T33: 1.0624 T12: 0.0866 REMARK 3 T13: 0.1214 T23: 0.3383 REMARK 3 L TENSOR REMARK 3 L11: 1.5776 L22: 7.9887 REMARK 3 L33: 1.1071 L12: 2.4788 REMARK 3 L13: -1.1873 L23: 1.4392 REMARK 3 S TENSOR REMARK 3 S11: -0.4631 S12: -0.8072 S13: -1.8091 REMARK 3 S21: 0.8320 S22: -0.3234 S23: -1.6223 REMARK 3 S31: 0.7497 S32: 0.6516 S33: 0.5629 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5440 20.2694 296.0663 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.4931 REMARK 3 T33: 0.4289 T12: -0.0182 REMARK 3 T13: -0.0696 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 9.5921 L22: 7.2558 REMARK 3 L33: 6.5907 L12: 4.3217 REMARK 3 L13: -1.8185 L23: 0.5096 REMARK 3 S TENSOR REMARK 3 S11: -0.9696 S12: 1.1322 S13: 0.2497 REMARK 3 S21: -1.0839 S22: 0.4724 S23: 0.3479 REMARK 3 S31: 0.1496 S32: -0.3754 S33: 0.3177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2286 34.0188 263.1516 REMARK 3 T TENSOR REMARK 3 T11: 1.0099 T22: 1.3417 REMARK 3 T33: 0.8150 T12: -0.1719 REMARK 3 T13: -0.4483 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 3.7818 L22: 3.2746 REMARK 3 L33: 5.6765 L12: -2.5038 REMARK 3 L13: 3.6728 L23: -0.1885 REMARK 3 S TENSOR REMARK 3 S11: -0.4306 S12: -0.4339 S13: 0.3091 REMARK 3 S21: 0.6602 S22: -0.0584 S23: -0.8140 REMARK 3 S31: -0.2834 S32: 0.6278 S33: 0.4321 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8201 47.4400 241.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.7461 T22: 0.6026 REMARK 3 T33: 0.7126 T12: 0.0460 REMARK 3 T13: -0.1821 T23: -0.2153 REMARK 3 L TENSOR REMARK 3 L11: 5.3361 L22: 3.3255 REMARK 3 L33: 2.6950 L12: 0.9784 REMARK 3 L13: 3.1185 L23: -0.4609 REMARK 3 S TENSOR REMARK 3 S11: -0.5031 S12: -0.8246 S13: 1.3245 REMARK 3 S21: 0.4026 S22: -0.2350 S23: 0.4861 REMARK 3 S31: -0.8418 S32: -0.4601 S33: 0.5511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 43 THROUGH 61 OR REMARK 3 RESID 63 THROUGH 119 OR RESID 121 THROUGH REMARK 3 126 OR RESID 128 THROUGH 213 OR RESID 215 REMARK 3 THROUGH 237 OR RESID 239 OR (RESID 240 REMARK 3 AND (NAME N OR NAME CA OR NAME C )) OR REMARK 3 RESID 241 THROUGH 261 OR RESID 263 REMARK 3 THROUGH 270 OR RESID 272 OR RESID 274 OR REMARK 3 RESID 276 THROUGH 288 OR RESID 290 REMARK 3 THROUGH 319)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 43 THROUGH 61 OR REMARK 3 RESID 63 THROUGH 119 OR RESID 121 THROUGH REMARK 3 126 OR RESID 128 THROUGH 173 OR RESID 179 REMARK 3 THROUGH 187 OR (RESID 188 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 189 THROUGH 206 OR (RESID 207 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 208 THROUGH 213 REMARK 3 OR RESID 215 THROUGH 227 OR (RESID 228 REMARK 3 THROUGH 229 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 230 THROUGH 237 OR (RESID 239 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 240 THROUGH 261 OR RESID 263 REMARK 3 THROUGH 270 OR RESID 272 OR RESID 274 OR REMARK 3 RESID 276 THROUGH 284 OR (RESID 285 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 286 THROUGH 288 OR REMARK 3 RESID 290 THROUGH 300 OR (RESID 301 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 302 THROUGH 319)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 18.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 2.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR BIPYRAMIDS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 50/50 (V/V) MIX OF 1.6 M MGSO4, 0.1 REMARK 280 M MES PH 6.5 WITH 20% PEG 8000, 100 MM HEPES PH 7.5., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.07900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.78200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.78200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.53950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.78200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.78200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 196.61850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.78200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.78200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.53950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.78200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.78200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 196.61850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.07900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 36 REMARK 465 THR A 37 REMARK 465 PHE A 38 REMARK 465 PRO A 39 REMARK 465 LYS A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 174 REMARK 465 LYS A 175 REMARK 465 GLU A 176 REMARK 465 GLY A 177 REMARK 465 GLN A 178 REMARK 465 PRO A 320 REMARK 465 ARG A 321 REMARK 465 ALA B 36 REMARK 465 THR B 37 REMARK 465 PHE B 38 REMARK 465 PRO B 39 REMARK 465 LYS B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 175 REMARK 465 GLU B 176 REMARK 465 GLY B 177 REMARK 465 GLN B 178 REMARK 465 PRO B 320 REMARK 465 ARG B 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 ASN A 121 CG OD1 ND2 REMARK 470 HIS A 122 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ASN A 285 CG OD1 ND2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ASP B 120 CG OD1 OD2 REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 HIS B 122 CG ND1 CD2 CE1 NE2 REMARK 470 GLY B 240 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 293 O5 NAG A 1004 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 95.08 -65.87 REMARK 500 ARG A 71 -112.10 64.27 REMARK 500 MET A 139 -89.68 -83.33 REMARK 500 ALA A 209 -159.70 55.01 REMARK 500 ALA A 229 73.03 -167.81 REMARK 500 LYS A 275 -151.44 -86.10 REMARK 500 ARG B 71 -117.59 64.60 REMARK 500 ASN B 121 -57.92 -120.81 REMARK 500 MET B 139 -89.84 -84.24 REMARK 500 SER B 173 -125.60 -115.35 REMARK 500 ASP B 191 70.44 50.32 REMARK 500 ALA B 209 -157.71 51.96 REMARK 500 ALA B 229 75.16 -166.13 REMARK 500 LYS B 275 -163.35 -119.00 REMARK 500 ARG B 277 -35.86 64.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 5UV6 A 36 316 UNP Q14982 OPCM_HUMAN 36 316 DBREF 5UV6 B 36 316 UNP Q14982 OPCM_HUMAN 36 316 SEQADV 5UV6 ALA A 317 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 LEU A 318 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 VAL A 319 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 PRO A 320 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 ARG A 321 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 ALA B 317 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 LEU B 318 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 VAL B 319 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 PRO B 320 UNP Q14982 EXPRESSION TAG SEQADV 5UV6 ARG B 321 UNP Q14982 EXPRESSION TAG SEQRES 1 A 286 ALA THR PHE PRO LYS ALA MET ASP ASN VAL THR VAL ARG SEQRES 2 A 286 GLN GLY GLU SER ALA THR LEU ARG CYS THR ILE ASP ASP SEQRES 3 A 286 ARG VAL THR ARG VAL ALA TRP LEU ASN ARG SER THR ILE SEQRES 4 A 286 LEU TYR ALA GLY ASN ASP LYS TRP SER ILE ASP PRO ARG SEQRES 5 A 286 VAL ILE ILE LEU VAL ASN THR PRO THR GLN TYR SER ILE SEQRES 6 A 286 MET ILE GLN ASN VAL ASP VAL TYR ASP GLU GLY PRO TYR SEQRES 7 A 286 THR CYS SER VAL GLN THR ASP ASN HIS PRO LYS THR SER SEQRES 8 A 286 ARG VAL HIS LEU ILE VAL GLN VAL PRO PRO GLN ILE MET SEQRES 9 A 286 ASN ILE SER SER ASP ILE THR VAL ASN GLU GLY SER SER SEQRES 10 A 286 VAL THR LEU LEU CYS LEU ALA ILE GLY ARG PRO GLU PRO SEQRES 11 A 286 THR VAL THR TRP ARG HIS LEU SER VAL LYS GLU GLY GLN SEQRES 12 A 286 GLY PHE VAL SER GLU ASP GLU TYR LEU GLU ILE SER ASP SEQRES 13 A 286 ILE LYS ARG ASP GLN SER GLY GLU TYR GLU CYS SER ALA SEQRES 14 A 286 LEU ASN ASP VAL ALA ALA PRO ASP VAL ARG LYS VAL LYS SEQRES 15 A 286 ILE THR VAL ASN TYR PRO PRO TYR ILE SER LYS ALA LYS SEQRES 16 A 286 ASN THR GLY VAL SER VAL GLY GLN LYS GLY ILE LEU SER SEQRES 17 A 286 CYS GLU ALA SER ALA VAL PRO MET ALA GLU PHE GLN TRP SEQRES 18 A 286 PHE LYS GLU GLU THR ARG LEU ALA THR GLY LEU ASP GLY SEQRES 19 A 286 MET ARG ILE GLU ASN LYS GLY ARG MET SER THR LEU THR SEQRES 20 A 286 PHE PHE ASN VAL SER GLU LYS ASP TYR GLY ASN TYR THR SEQRES 21 A 286 CYS VAL ALA THR ASN LYS LEU GLY ASN THR ASN ALA SER SEQRES 22 A 286 ILE THR LEU TYR GLY PRO GLY ALA ALA LEU VAL PRO ARG SEQRES 1 B 286 ALA THR PHE PRO LYS ALA MET ASP ASN VAL THR VAL ARG SEQRES 2 B 286 GLN GLY GLU SER ALA THR LEU ARG CYS THR ILE ASP ASP SEQRES 3 B 286 ARG VAL THR ARG VAL ALA TRP LEU ASN ARG SER THR ILE SEQRES 4 B 286 LEU TYR ALA GLY ASN ASP LYS TRP SER ILE ASP PRO ARG SEQRES 5 B 286 VAL ILE ILE LEU VAL ASN THR PRO THR GLN TYR SER ILE SEQRES 6 B 286 MET ILE GLN ASN VAL ASP VAL TYR ASP GLU GLY PRO TYR SEQRES 7 B 286 THR CYS SER VAL GLN THR ASP ASN HIS PRO LYS THR SER SEQRES 8 B 286 ARG VAL HIS LEU ILE VAL GLN VAL PRO PRO GLN ILE MET SEQRES 9 B 286 ASN ILE SER SER ASP ILE THR VAL ASN GLU GLY SER SER SEQRES 10 B 286 VAL THR LEU LEU CYS LEU ALA ILE GLY ARG PRO GLU PRO SEQRES 11 B 286 THR VAL THR TRP ARG HIS LEU SER VAL LYS GLU GLY GLN SEQRES 12 B 286 GLY PHE VAL SER GLU ASP GLU TYR LEU GLU ILE SER ASP SEQRES 13 B 286 ILE LYS ARG ASP GLN SER GLY GLU TYR GLU CYS SER ALA SEQRES 14 B 286 LEU ASN ASP VAL ALA ALA PRO ASP VAL ARG LYS VAL LYS SEQRES 15 B 286 ILE THR VAL ASN TYR PRO PRO TYR ILE SER LYS ALA LYS SEQRES 16 B 286 ASN THR GLY VAL SER VAL GLY GLN LYS GLY ILE LEU SER SEQRES 17 B 286 CYS GLU ALA SER ALA VAL PRO MET ALA GLU PHE GLN TRP SEQRES 18 B 286 PHE LYS GLU GLU THR ARG LEU ALA THR GLY LEU ASP GLY SEQRES 19 B 286 MET ARG ILE GLU ASN LYS GLY ARG MET SER THR LEU THR SEQRES 20 B 286 PHE PHE ASN VAL SER GLU LYS ASP TYR GLY ASN TYR THR SEQRES 21 B 286 CYS VAL ALA THR ASN LYS LEU GLY ASN THR ASN ALA SER SEQRES 22 B 286 ILE THR LEU TYR GLY PRO GLY ALA ALA LEU VAL PRO ARG HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG A1004 14 HET NAG A1005 14 HET NAG B2004 14 HET NAG B2005 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 9 HOH *40(H2 O) HELIX 1 AA1 ASP A 106 GLU A 110 5 5 HELIX 2 AA2 LYS A 193 SER A 197 5 5 HELIX 3 AA3 ASP B 106 GLU B 110 5 5 HELIX 4 AA4 LYS B 193 SER B 197 5 5 SHEET 1 AA1 4 ASN A 44 ARG A 48 0 SHEET 2 AA1 4 ARG A 127 ILE A 141 1 O HIS A 129 N VAL A 45 SHEET 3 AA1 4 GLY A 111 THR A 119 -1 N GLY A 111 O LEU A 130 SHEET 4 AA1 4 PRO A 123 LYS A 124 -1 O LYS A 124 N VAL A 117 SHEET 1 AA2 7 ASP A 80 LYS A 81 0 SHEET 2 AA2 7 THR A 73 ALA A 77 -1 N ALA A 77 O ASP A 80 SHEET 3 AA2 7 VAL A 63 ASN A 70 -1 N ASN A 70 O THR A 73 SHEET 4 AA2 7 GLY A 111 THR A 119 -1 O GLN A 118 N THR A 64 SHEET 5 AA2 7 ARG A 127 ILE A 141 -1 O LEU A 130 N GLY A 111 SHEET 6 AA2 7 VAL A 153 ARG A 162 -1 O LEU A 158 N MET A 139 SHEET 7 AA2 7 TYR A 186 ILE A 189 -1 O ILE A 189 N VAL A 153 SHEET 1 AA3 3 ALA A 53 THR A 58 0 SHEET 2 AA3 3 GLN A 97 ILE A 102 -1 O ILE A 100 N LEU A 55 SHEET 3 AA3 3 VAL A 88 THR A 94 -1 N LEU A 91 O SER A 99 SHEET 1 AA4 5 ILE A 145 ASN A 148 0 SHEET 2 AA4 5 ASP A 212 LYS A 228 1 O ASN A 221 N VAL A 147 SHEET 3 AA4 5 GLY A 198 LEU A 205 -1 N CYS A 202 O ARG A 214 SHEET 4 AA4 5 THR A 166 HIS A 171 -1 N THR A 166 O LEU A 205 SHEET 5 AA4 5 PHE A 180 SER A 182 -1 O SER A 182 N TRP A 169 SHEET 1 AA5 5 ILE A 145 ASN A 148 0 SHEET 2 AA5 5 ASP A 212 LYS A 228 1 O ASN A 221 N VAL A 147 SHEET 3 AA5 5 GLY A 240 VAL A 249 -1 O GLU A 245 N SER A 227 SHEET 4 AA5 5 MET A 278 PHE A 283 -1 O LEU A 281 N LEU A 242 SHEET 5 AA5 5 MET A 270 ASN A 274 -1 N GLU A 273 O THR A 280 SHEET 1 AA6 5 THR A 232 GLY A 233 0 SHEET 2 AA6 5 GLY A 303 TYR A 312 1 O THR A 310 N THR A 232 SHEET 3 AA6 5 GLY A 292 ASN A 300 -1 N TYR A 294 O ILE A 309 SHEET 4 AA6 5 GLU A 253 LYS A 258 -1 N GLN A 255 O VAL A 297 SHEET 5 AA6 5 THR A 261 ARG A 262 -1 O THR A 261 N LYS A 258 SHEET 1 AA7 4 ASN B 44 ARG B 48 0 SHEET 2 AA7 4 ARG B 127 ILE B 141 1 O HIS B 129 N VAL B 45 SHEET 3 AA7 4 GLY B 111 THR B 119 -1 N GLY B 111 O LEU B 130 SHEET 4 AA7 4 PRO B 123 LYS B 124 -1 O LYS B 124 N VAL B 117 SHEET 1 AA8 7 ASP B 80 LYS B 81 0 SHEET 2 AA8 7 THR B 73 ALA B 77 -1 N ALA B 77 O ASP B 80 SHEET 3 AA8 7 VAL B 63 ASN B 70 -1 N TRP B 68 O LEU B 75 SHEET 4 AA8 7 GLY B 111 THR B 119 -1 O GLN B 118 N THR B 64 SHEET 5 AA8 7 ARG B 127 ILE B 141 -1 O LEU B 130 N GLY B 111 SHEET 6 AA8 7 VAL B 153 ARG B 162 -1 O LEU B 158 N MET B 139 SHEET 7 AA8 7 TYR B 186 ILE B 189 -1 O ILE B 189 N VAL B 153 SHEET 1 AA9 3 ALA B 53 THR B 58 0 SHEET 2 AA9 3 GLN B 97 ILE B 102 -1 O ILE B 102 N ALA B 53 SHEET 3 AA9 3 VAL B 88 THR B 94 -1 N LEU B 91 O SER B 99 SHEET 1 AB1 5 ILE B 145 ASN B 148 0 SHEET 2 AB1 5 ASP B 212 ALA B 229 1 O ASN B 221 N VAL B 147 SHEET 3 AB1 5 GLY B 198 LEU B 205 -1 N TYR B 200 O VAL B 216 SHEET 4 AB1 5 THR B 166 HIS B 171 -1 N ARG B 170 O GLU B 201 SHEET 5 AB1 5 PHE B 180 SER B 182 -1 O SER B 182 N TRP B 169 SHEET 1 AB2 5 ILE B 145 ASN B 148 0 SHEET 2 AB2 5 ASP B 212 ALA B 229 1 O ASN B 221 N VAL B 147 SHEET 3 AB2 5 LEU B 242 VAL B 249 -1 O GLU B 245 N SER B 227 SHEET 4 AB2 5 MET B 278 PHE B 283 -1 O LEU B 281 N LEU B 242 SHEET 5 AB2 5 MET B 270 ASN B 274 -1 N ARG B 271 O THR B 282 SHEET 1 AB3 5 THR B 232 GLY B 233 0 SHEET 2 AB3 5 GLY B 303 TYR B 312 1 O THR B 310 N THR B 232 SHEET 3 AB3 5 GLY B 292 ASN B 300 -1 N TYR B 294 O ILE B 309 SHEET 4 AB3 5 GLU B 253 PHE B 257 -1 N GLN B 255 O VAL B 297 SHEET 5 AB3 5 ARG B 262 LEU B 263 -1 O LEU B 263 N TRP B 256 SSBOND 1 CYS A 57 CYS A 115 1555 1555 2.05 SSBOND 2 CYS A 157 CYS A 202 1555 1555 2.03 SSBOND 3 CYS A 244 CYS A 296 1555 1555 2.02 SSBOND 4 CYS B 57 CYS B 115 1555 1555 2.04 SSBOND 5 CYS B 157 CYS B 202 1555 1555 2.03 SSBOND 6 CYS B 244 CYS B 296 1555 1555 2.03 LINK ND2 ASN A 70 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN A 293 C1 NAG A1004 1555 1555 1.52 LINK ND2 ASN A 306 C1 NAG A1005 1555 1555 1.43 LINK ND2 ASN B 70 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 293 C1 NAG B2005 1555 1555 1.42 LINK ND2 ASN B 306 C1 NAG B2004 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.47 CISPEP 1 ARG A 162 PRO A 163 0 -0.90 CISPEP 2 VAL A 249 PRO A 250 0 -3.98 CISPEP 3 ARG B 162 PRO B 163 0 -0.06 CISPEP 4 VAL B 249 PRO B 250 0 -5.48 CRYST1 93.564 93.564 262.158 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003814 0.00000