PDB Short entry for 5UVM HEADER HYDROLASE 20-FEB-17 5UVM TITLE HIT FAMILY HYDROLASE FROM CLOSTRIDIUM THERMOCELLUM CTH-393 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE TRIAD (HIT) PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINICLOSTRIDIUM THERMOCELLUM DSM 1313; SOURCE 3 ORGANISM_TAXID: 637887; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B- SOURCE 5 4536 / VPI 7372; SOURCE 6 GENE: CTHE_1369; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HABEL,W.TEMPEL,Z.-J.LIU,J.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY AUTHOR 2 FOR STRUCTURAL GENOMICS (SECSG) REVDAT 3 22-NOV-17 5UVM 1 REMARK REVDAT 2 10-MAY-17 5UVM 1 AUTHOR JRNL REVDAT 1 05-APR-17 5UVM 0 SPRSDE 05-APR-17 5UVM 1XQU JRNL AUTH J.HABEL,W.TEMPEL,Z.-J.LIU,J.ROSE,B.-C.WANG JRNL TITL HIT FAMILY HYDROLASE FROM CLOSTRIDIUM THERMOCELLUM CTH-393 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 15683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : FLAGS TAKEN FROM PDB ENTRY REMARK 3 1XQU REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1823 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1719 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 1.765 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3976 ; 1.046 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 7.059 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;37.798 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;13.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2070 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 324 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 925 ; 2.939 ; 4.102 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 924 ; 2.932 ; 4.100 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 4.354 ; 6.139 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1156 ; 4.356 ; 6.141 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 898 ; 3.259 ; 4.303 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 898 ; 3.257 ; 4.303 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1334 ; 5.014 ; 6.340 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1933 ; 6.566 ;47.942 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1931 ; 6.561 ;47.928 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. METAL IONS WERE REMARK 3 ASSIGNED AS ZINC BASED ON AMINO ACID RESIDUE TYPES AT THE BINDING REMARK 3 SITE AND FOLLOWING PRECEDENCE OF PDB ENTRIES 4EGU, 3OJ7, 3OMF. REMARK 3 CAUTION: THE LIGAND BOUND NEAR ASP30 OF CHAIN B WAS TENTATIVELY REMARK 3 IDENTIFIED AS ADENOSINE BASED ON THE SHAPE OF DIFFERENCE ELECTRON REMARK 3 DENSITY AND THE PRESENCE OF SIMILAR LIGANDS IN PDB ENTRIES 4EGU, REMARK 3 3OMF. ULTIMATE IDENTITY AND ORIGIN OF THE LIGAND REMAIN UNKNOWN. REMARK 3 THERE IS SIMILAR BUT WEAKER ELECTRON DENSITY NEAR AN EQUIVALENT REMARK 3 SITE IN CHAIN A. REMARK 3 RESTRAINTS FOR ADENOSINE GEOMETRY WERE PREPARED ON THE GRADE REMARK 3 SERVER (GLOBALPHASING). REMARK 3 WE NOTE THE DUBIOUS FIT OF THE LEU1 SIDE CHAIN TO ELECTRON DENSITY REMARK 3 AND SUSPECT A MISASSIGNMENT OR MUTATION OF THIS RESIDUE. REMARK 4 REMARK 4 5UVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1XQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3000, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.44250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.72125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.16375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.44250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.16375 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.72125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 78.80400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 78.80400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.72125 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.80400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -57.44250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -32 REMARK 465 GLY A -31 REMARK 465 SER A -30 REMARK 465 SER A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 GLY A -20 REMARK 465 LEU A -19 REMARK 465 VAL A -18 REMARK 465 PRO A -17 REMARK 465 ARG A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 GLN A -13 REMARK 465 SER A -12 REMARK 465 THR A -11 REMARK 465 SER A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 LYS A -7 REMARK 465 LYS A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 MSE A -2 REMARK 465 TYR A -1 REMARK 465 MSE B -32 REMARK 465 GLY B -31 REMARK 465 SER B -30 REMARK 465 SER B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 SER B -22 REMARK 465 SER B -21 REMARK 465 GLY B -20 REMARK 465 LEU B -19 REMARK 465 VAL B -18 REMARK 465 PRO B -17 REMARK 465 ARG B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 GLN B -13 REMARK 465 SER B -12 REMARK 465 THR B -11 REMARK 465 SER B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 LYS B -7 REMARK 465 LYS B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 LEU B -3 REMARK 465 MSE B -2 REMARK 465 TYR B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 0 OG1 CG2 REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 LYS A 80 NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 THR B 0 N CB OG1 CG2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LYS B 11 NZ REMARK 470 LYS B 29 NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 LYS B 66 NZ REMARK 470 LYS B 70 CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 LYS B 80 CD CE NZ REMARK 470 LYS B 112 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 69 OH TYR B 82 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 -175.06 -170.86 REMARK 500 PHE A 97 58.25 -91.44 REMARK 500 ASN B 49 177.40 175.62 REMARK 500 PHE B 97 50.80 -91.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 118.2 REMARK 620 3 HIS A 46 ND1 110.1 105.9 REMARK 620 4 HIS A 98 ND1 112.1 109.4 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 CYS B 7 SG 113.8 REMARK 620 3 HIS B 46 ND1 107.3 103.7 REMARK 620 4 HIS B 98 ND1 119.6 108.4 102.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XQU RELATED DB: PDB REMARK 900 THIS MODEL IS DERIVED FROM COORDINATES AND EXPERIMENTAL DATA REMARK 900 ORIGINALLY DEPOSITED UNDER PDB ENTRY 1XQU, AND CRITICALLY DEPENDS REMARK 900 ON THE CONTRIBUTIONS OF THE ORIGINAL ENTRY'S AUTHORS. INFORMATION REMARK 900 PERTAINING TO AMINO ACID SEQUENCE, CRYSTALLIZATION, DATA COLLECTION REMARK 900 AND PROCESSING WAS COPIED FROM PDB ENTRY 1XQU. REMARK 900 RELATED ID: SECSG-CTH-393 RELATED DB: TARGETTRACK DBREF 5UVM A 2 114 UNP A3DF72 A3DF72_CLOTH 2 114 DBREF 5UVM B 2 114 UNP A3DF72 A3DF72_CLOTH 2 114 SEQADV 5UVM MSE A -32 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY A -31 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -30 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -29 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -28 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -27 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -26 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -25 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -24 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS A -23 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -22 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -21 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY A -20 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU A -19 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM VAL A -18 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM PRO A -17 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM ARG A -16 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY A -15 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -14 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLN A -13 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -12 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM THR A -11 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER A -10 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU A -9 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM TYR A -8 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LYS A -7 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LYS A -6 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM ALA A -5 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY A -4 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU A -3 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM MSE A -2 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM TYR A -1 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM THR A 0 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU A 1 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM MSE B -32 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY B -31 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -30 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -29 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -28 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -27 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -26 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -25 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -24 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM HIS B -23 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -22 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -21 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY B -20 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU B -19 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM VAL B -18 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM PRO B -17 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM ARG B -16 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY B -15 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -14 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLN B -13 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -12 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM THR B -11 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM SER B -10 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU B -9 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM TYR B -8 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LYS B -7 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LYS B -6 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM ALA B -5 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM GLY B -4 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU B -3 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM MSE B -2 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM TYR B -1 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM THR B 0 UNP A3DF72 EXPRESSION TAG SEQADV 5UVM LEU B 1 UNP A3DF72 EXPRESSION TAG SEQRES 1 A 147 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 147 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 A 147 LYS ALA GLY LEU MSE TYR THR LEU GLU ASN CYS VAL PHE SEQRES 4 A 147 CYS LYS ILE ILE LYS ARG GLU LEU PRO SER THR ILE TYR SEQRES 5 A 147 TYR GLU ASP GLU ARG VAL ILE ALA ILE LYS ASP ILE ASN SEQRES 6 A 147 PRO ALA ALA PRO VAL HIS VAL LEU ILE ILE PRO LYS GLU SEQRES 7 A 147 HIS ILE ALA ASN VAL LYS GLU ILE ASN GLU SER ASN ALA SEQRES 8 A 147 GLN ILE LEU ILE ASP ILE HIS LYS ALA ALA ASN LYS VAL SEQRES 9 A 147 ALA GLU ASP LEU GLY ILE ALA GLU LYS GLY TYR ARG LEU SEQRES 10 A 147 ILE THR ASN CYS GLY VAL ALA ALA GLY GLN THR VAL PHE SEQRES 11 A 147 HIS LEU HIS TYR HIS LEU LEU GLY GLY VAL ASP MSE GLY SEQRES 12 A 147 PRO LYS ILE LEU SEQRES 1 B 147 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 147 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 B 147 LYS ALA GLY LEU MSE TYR THR LEU GLU ASN CYS VAL PHE SEQRES 4 B 147 CYS LYS ILE ILE LYS ARG GLU LEU PRO SER THR ILE TYR SEQRES 5 B 147 TYR GLU ASP GLU ARG VAL ILE ALA ILE LYS ASP ILE ASN SEQRES 6 B 147 PRO ALA ALA PRO VAL HIS VAL LEU ILE ILE PRO LYS GLU SEQRES 7 B 147 HIS ILE ALA ASN VAL LYS GLU ILE ASN GLU SER ASN ALA SEQRES 8 B 147 GLN ILE LEU ILE ASP ILE HIS LYS ALA ALA ASN LYS VAL SEQRES 9 B 147 ALA GLU ASP LEU GLY ILE ALA GLU LYS GLY TYR ARG LEU SEQRES 10 B 147 ILE THR ASN CYS GLY VAL ALA ALA GLY GLN THR VAL PHE SEQRES 11 B 147 HIS LEU HIS TYR HIS LEU LEU GLY GLY VAL ASP MSE GLY SEQRES 12 B 147 PRO LYS ILE LEU MODRES 5UVM MSE A 109 MET MODIFIED RESIDUE MODRES 5UVM MSE B 109 MET MODIFIED RESIDUE HET MSE A 109 8 HET MSE B 109 8 HET ZN A 201 1 HET UNX A 202 1 HET UNX A 203 1 HET UNX A 204 1 HET UNX A 205 1 HET UNX A 206 1 HET UNX A 207 1 HET UNX A 208 1 HET UNX A 209 1 HET UNX A 210 1 HET UNX A 211 1 HET UNX A 212 1 HET UNX A 213 1 HET UNX A 214 1 HET UNX A 215 1 HET UNX A 216 1 HET UNX A 217 1 HET UNX A 218 1 HET UNX A 219 1 HET ZN B 201 1 HET UNX B 202 1 HET UNX B 203 1 HET UNX B 204 1 HET UNX B 205 1 HET UNX B 206 1 HET ADN B 207 19 HET UNX B 208 1 HET UNX B 209 1 HET UNX B 210 1 HET UNX B 211 1 HET UNX B 212 1 HET UNX B 213 1 HET UNX B 214 1 HET UNX B 215 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM ADN ADENOSINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 UNX 31(X) FORMUL 28 ADN C10 H13 N5 O4 FORMUL 37 HOH *28(H2 O) HELIX 1 AA1 CYS A 4 LYS A 11 1 8 HELIX 2 AA2 ASN A 49 ILE A 53 5 5 HELIX 3 AA3 GLN A 59 LEU A 75 1 17 HELIX 4 AA4 CYS B 4 LYS B 11 1 8 HELIX 5 AA5 ASN B 49 ILE B 53 5 5 HELIX 6 AA6 GLN B 59 LEU B 75 1 17 HELIX 7 AA7 GLY B 89 GLY B 93 5 5 SHEET 1 AA1 5 ILE A 18 GLU A 21 0 SHEET 2 AA1 5 VAL A 25 LYS A 29 -1 O ALA A 27 N TYR A 19 SHEET 3 AA1 5 VAL A 37 PRO A 43 -1 O ILE A 42 N ILE A 26 SHEET 4 AA1 5 TYR A 101 GLY A 105 -1 O TYR A 101 N ILE A 41 SHEET 5 AA1 5 ARG A 83 ILE A 85 -1 N ILE A 85 O HIS A 102 SHEET 1 AA2 5 ILE B 18 GLU B 21 0 SHEET 2 AA2 5 VAL B 25 LYS B 29 -1 O ALA B 27 N TYR B 20 SHEET 3 AA2 5 VAL B 37 PRO B 43 -1 O ILE B 42 N ILE B 26 SHEET 4 AA2 5 TYR B 101 GLY B 105 -1 O TYR B 101 N ILE B 41 SHEET 5 AA2 5 TYR B 82 THR B 86 -1 N ILE B 85 O HIS B 102 LINK SG CYS A 4 ZN ZN A 201 1555 1555 2.23 LINK SG CYS A 7 ZN ZN A 201 1555 1555 2.33 LINK ND1 HIS A 46 ZN ZN A 201 1555 1555 2.02 LINK ND1 HIS A 98 ZN ZN A 201 1555 1555 2.13 LINK C ASP A 108 N MSE A 109 1555 1555 1.34 LINK C MSE A 109 N GLY A 110 1555 1555 1.34 LINK SG CYS B 4 ZN ZN B 201 1555 1555 2.23 LINK SG CYS B 7 ZN ZN B 201 1555 1555 2.34 LINK ND1 HIS B 46 ZN ZN B 201 1555 1555 2.16 LINK ND1 HIS B 98 ZN ZN B 201 1555 1555 2.01 LINK C ASP B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N GLY B 110 1555 1555 1.33 SITE 1 AC1 4 CYS A 4 CYS A 7 HIS A 46 HIS A 98 SITE 1 AC2 4 CYS B 4 CYS B 7 HIS B 46 HIS B 98 SITE 1 AC3 12 VAL B 5 PHE B 6 ILE B 9 LYS B 29 SITE 2 AC3 12 ASP B 30 ILE B 31 LEU B 40 HIS B 100 SITE 3 AC3 12 HIS B 102 HOH B 305 HOH B 310 HOH B 312 CRYST1 78.804 78.804 114.885 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008704 0.00000