PDB Short entry for 5V09 HEADER HYDROLASE/DNA 28-FEB-17 5V09 TITLE CRYSTAL STRUCTURE OF HUMAN EXONUCLEASE 1 EXO1 (D225A) IN COMPLEX WITH TITLE 2 5' RECESSED-END DNA (RVII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE 1; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: UNP RESIDUES 1-352; COMPND 5 SYNONYM: HEXO1, EXONUCLEASE I, HEXOI; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*TP*CP*AP*T)-3'); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*AP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXO1, EXOI, HEX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,L.S.BEESE REVDAT 6 04-OCT-23 5V09 1 LINK REVDAT 5 04-DEC-19 5V09 1 REMARK REVDAT 4 13-SEP-17 5V09 1 REMARK REVDAT 3 21-JUN-17 5V09 1 JRNL REVDAT 2 07-JUN-17 5V09 1 JRNL REVDAT 1 24-MAY-17 5V09 0 JRNL AUTH Y.SHI,H.W.HELLINGA,L.S.BEESE JRNL TITL INTERPLAY OF CATALYSIS, FIDELITY, THREADING, AND JRNL TITL 2 PROCESSIVITY IN THE EXO- AND ENDONUCLEOLYTIC REACTIONS OF JRNL TITL 3 HUMAN EXONUCLEASE I. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6010 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533382 JRNL DOI 10.1073/PNAS.1704845114 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6006 - 5.4972 0.97 1667 148 0.2036 0.2441 REMARK 3 2 5.4972 - 4.3644 0.98 1562 139 0.1934 0.2032 REMARK 3 3 4.3644 - 3.8130 0.99 1562 139 0.2023 0.2454 REMARK 3 4 3.8130 - 3.4645 0.99 1547 134 0.2275 0.2675 REMARK 3 5 3.4645 - 3.2162 0.99 1520 137 0.2234 0.2733 REMARK 3 6 3.2162 - 3.0266 1.00 1549 137 0.2587 0.3194 REMARK 3 7 3.0266 - 2.8751 1.00 1516 136 0.3101 0.3345 REMARK 3 8 2.8751 - 2.7499 1.00 1505 131 0.3006 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3306 REMARK 3 ANGLE : 0.752 4554 REMARK 3 CHIRALITY : 0.042 513 REMARK 3 PLANARITY : 0.006 505 REMARK 3 DIHEDRAL : 17.295 1278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9366 47.1860 -23.2889 REMARK 3 T TENSOR REMARK 3 T11: 1.6290 T22: 1.3326 REMARK 3 T33: 1.4497 T12: 0.3814 REMARK 3 T13: -0.0749 T23: 0.5616 REMARK 3 L TENSOR REMARK 3 L11: 3.7271 L22: 3.4090 REMARK 3 L33: 1.0516 L12: 0.9999 REMARK 3 L13: -1.4332 L23: 0.8613 REMARK 3 S TENSOR REMARK 3 S11: 0.6336 S12: 1.0110 S13: -0.3085 REMARK 3 S21: -0.5030 S22: 1.0462 S23: 0.9180 REMARK 3 S31: 0.0634 S32: -0.9297 S33: -1.1278 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3146 41.6220 -9.0058 REMARK 3 T TENSOR REMARK 3 T11: 1.7763 T22: 1.1746 REMARK 3 T33: 1.4516 T12: 0.5993 REMARK 3 T13: 0.1643 T23: 0.3946 REMARK 3 L TENSOR REMARK 3 L11: 1.9533 L22: 1.5661 REMARK 3 L33: 2.2263 L12: -1.3321 REMARK 3 L13: 0.4027 L23: 0.9085 REMARK 3 S TENSOR REMARK 3 S11: 0.1946 S12: -0.9070 S13: -0.1653 REMARK 3 S21: -0.3384 S22: -0.0406 S23: 0.5473 REMARK 3 S31: -0.0295 S32: -0.5541 S33: -0.2099 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:13) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6036 21.4747 -6.0093 REMARK 3 T TENSOR REMARK 3 T11: 1.4806 T22: 0.9747 REMARK 3 T33: 1.5895 T12: -0.3563 REMARK 3 T13: -0.2166 T23: 0.4264 REMARK 3 L TENSOR REMARK 3 L11: 0.6496 L22: 0.5473 REMARK 3 L33: 2.7865 L12: -0.3237 REMARK 3 L13: -0.4656 L23: 1.1942 REMARK 3 S TENSOR REMARK 3 S11: -0.8627 S12: 0.7959 S13: 0.3199 REMARK 3 S21: -0.7315 S22: 0.2890 S23: 1.3609 REMARK 3 S31: 0.7208 S32: -1.2337 S33: 0.4916 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4567 34.3171 -7.6792 REMARK 3 T TENSOR REMARK 3 T11: 0.9103 T22: 0.8649 REMARK 3 T33: 0.8967 T12: 0.1691 REMARK 3 T13: -0.0750 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 3.9466 L22: 3.7525 REMARK 3 L33: 4.6597 L12: -0.1854 REMARK 3 L13: -0.7910 L23: -0.1846 REMARK 3 S TENSOR REMARK 3 S11: 1.5274 S12: -0.2693 S13: -0.2824 REMARK 3 S21: 0.9165 S22: 0.5889 S23: 0.2907 REMARK 3 S31: -0.4388 S32: -0.3056 S33: -1.7380 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:10) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2539 44.4537 -18.1072 REMARK 3 T TENSOR REMARK 3 T11: 1.0360 T22: 0.5510 REMARK 3 T33: 2.1836 T12: 0.4707 REMARK 3 T13: -0.3223 T23: 1.3325 REMARK 3 L TENSOR REMARK 3 L11: 0.6155 L22: 1.7727 REMARK 3 L33: 0.1302 L12: -0.0584 REMARK 3 L13: 0.2165 L23: -0.2521 REMARK 3 S TENSOR REMARK 3 S11: 0.5292 S12: 0.0326 S13: -0.5596 REMARK 3 S21: -0.0135 S22: -0.0583 S23: 0.9198 REMARK 3 S31: -0.0751 S32: -0.2822 S33: 0.0236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN Z AND RESID 2:31) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5341 28.6060 -16.8104 REMARK 3 T TENSOR REMARK 3 T11: 0.5329 T22: 0.5333 REMARK 3 T33: 0.5237 T12: 0.0578 REMARK 3 T13: -0.0231 T23: -0.1597 REMARK 3 L TENSOR REMARK 3 L11: 0.7198 L22: 1.7819 REMARK 3 L33: 2.1224 L12: 0.7034 REMARK 3 L13: 0.5714 L23: -0.8472 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.2033 S13: -0.4423 REMARK 3 S21: -0.0372 S22: 0.2336 S23: 0.3572 REMARK 3 S31: 0.3800 S32: 0.1965 S33: -0.1942 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN Z AND RESID 32:37) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0378 26.1572 -1.8417 REMARK 3 T TENSOR REMARK 3 T11: 1.0470 T22: 0.5175 REMARK 3 T33: 0.5624 T12: -0.0013 REMARK 3 T13: 0.0384 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.1703 L22: 2.5207 REMARK 3 L33: 4.2387 L12: -0.1643 REMARK 3 L13: -0.0648 L23: 0.3788 REMARK 3 S TENSOR REMARK 3 S11: 0.2045 S12: 0.4691 S13: -0.1107 REMARK 3 S21: -0.1483 S22: 0.0630 S23: 0.2724 REMARK 3 S31: -0.1892 S32: -0.1783 S33: -0.2514 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN Z AND RESID 38:54) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1436 20.2075 7.0944 REMARK 3 T TENSOR REMARK 3 T11: 1.3326 T22: 0.7210 REMARK 3 T33: 0.8474 T12: -0.3412 REMARK 3 T13: 0.0701 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 0.4250 L22: 0.5415 REMARK 3 L33: 2.8398 L12: 0.4795 REMARK 3 L13: -0.7742 L23: -0.7731 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.1700 S13: -0.3890 REMARK 3 S21: 0.3307 S22: -0.2115 S23: 0.1047 REMARK 3 S31: 1.1058 S32: -0.0853 S33: 0.3154 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN Z AND RESID 55:72) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8314 16.1841 -5.2633 REMARK 3 T TENSOR REMARK 3 T11: 1.2045 T22: 0.4665 REMARK 3 T33: 0.7785 T12: 0.1653 REMARK 3 T13: -0.0563 T23: -0.1236 REMARK 3 L TENSOR REMARK 3 L11: 1.8528 L22: 0.6347 REMARK 3 L33: 1.7505 L12: -0.0501 REMARK 3 L13: -0.8058 L23: -0.6917 REMARK 3 S TENSOR REMARK 3 S11: 0.3620 S12: 0.2621 S13: -0.3364 REMARK 3 S21: 0.1469 S22: 0.0349 S23: -0.7326 REMARK 3 S31: 0.4961 S32: -0.0837 S33: -0.3441 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN Z AND RESID 73:86) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8228 35.0046 2.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.5635 REMARK 3 T33: 0.5306 T12: 0.0197 REMARK 3 T13: -0.0213 T23: -0.1073 REMARK 3 L TENSOR REMARK 3 L11: 2.3689 L22: 4.3324 REMARK 3 L33: 3.1777 L12: 1.6653 REMARK 3 L13: 0.9829 L23: -0.1951 REMARK 3 S TENSOR REMARK 3 S11: 0.2787 S12: -0.2871 S13: 0.2960 REMARK 3 S21: 0.2387 S22: -0.5555 S23: 0.4234 REMARK 3 S31: -0.3683 S32: 0.4359 S33: 0.2121 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN Z AND RESID 87:107) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6412 36.7358 6.6006 REMARK 3 T TENSOR REMARK 3 T11: 1.0522 T22: 0.9051 REMARK 3 T33: 1.4132 T12: -0.0941 REMARK 3 T13: 0.0984 T23: -0.1067 REMARK 3 L TENSOR REMARK 3 L11: 0.8897 L22: 3.1575 REMARK 3 L33: 4.4985 L12: -1.6331 REMARK 3 L13: -0.3464 L23: -0.1267 REMARK 3 S TENSOR REMARK 3 S11: -0.8973 S12: -0.0127 S13: 0.5366 REMARK 3 S21: 1.0756 S22: 0.0388 S23: -0.4620 REMARK 3 S31: 0.2292 S32: -0.9173 S33: 0.5872 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN Z AND RESID 108:124) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0650 27.6376 4.2067 REMARK 3 T TENSOR REMARK 3 T11: 1.1065 T22: 0.6784 REMARK 3 T33: 1.2873 T12: -0.1215 REMARK 3 T13: 0.2944 T23: -0.1463 REMARK 3 L TENSOR REMARK 3 L11: 2.6697 L22: 0.8381 REMARK 3 L33: 1.7284 L12: 0.7684 REMARK 3 L13: -2.0575 L23: -0.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.1745 S12: 0.3258 S13: -0.3165 REMARK 3 S21: 0.4397 S22: -0.1108 S23: 0.4760 REMARK 3 S31: 0.3667 S32: -0.8983 S33: 0.2439 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN Z AND RESID 125:144) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9896 20.9111 5.9408 REMARK 3 T TENSOR REMARK 3 T11: 1.1612 T22: 0.4668 REMARK 3 T33: 0.5379 T12: 0.1272 REMARK 3 T13: -0.0756 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.7763 L22: 3.5790 REMARK 3 L33: 3.6497 L12: 0.9770 REMARK 3 L13: -2.1045 L23: 1.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.7665 S12: -0.8152 S13: -0.2929 REMARK 3 S21: 0.5906 S22: -0.4042 S23: -0.1426 REMARK 3 S31: 1.0575 S32: 0.7018 S33: -0.2151 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN Z AND RESID 145:173) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8053 32.8617 -5.5048 REMARK 3 T TENSOR REMARK 3 T11: 0.4682 T22: 0.4786 REMARK 3 T33: 0.4666 T12: 0.0659 REMARK 3 T13: -0.0390 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 2.5371 L22: 2.0903 REMARK 3 L33: 2.5012 L12: 0.2056 REMARK 3 L13: 0.3106 L23: 0.3985 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: 0.4088 S13: -0.0579 REMARK 3 S21: 0.5019 S22: -0.0172 S23: -0.1857 REMARK 3 S31: 0.2537 S32: 0.8065 S33: -0.2170 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN Z AND RESID 174:184) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9562 34.3666 -13.2063 REMARK 3 T TENSOR REMARK 3 T11: 0.6910 T22: 0.4740 REMARK 3 T33: 0.4703 T12: 0.0216 REMARK 3 T13: -0.0188 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.1680 L22: 1.6099 REMARK 3 L33: 2.7054 L12: -1.1410 REMARK 3 L13: -1.3925 L23: 0.8192 REMARK 3 S TENSOR REMARK 3 S11: -0.4104 S12: -0.1914 S13: -0.1649 REMARK 3 S21: 0.0163 S22: -0.1034 S23: 0.0007 REMARK 3 S31: -0.1149 S32: 0.3970 S33: 0.4532 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN Z AND RESID 185:200) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6235 26.5637 -17.9415 REMARK 3 T TENSOR REMARK 3 T11: 0.8682 T22: 0.5586 REMARK 3 T33: 0.6512 T12: 0.0438 REMARK 3 T13: 0.0206 T23: -0.2128 REMARK 3 L TENSOR REMARK 3 L11: 2.2474 L22: 3.2980 REMARK 3 L33: 2.5073 L12: -0.2687 REMARK 3 L13: 0.3244 L23: -0.1673 REMARK 3 S TENSOR REMARK 3 S11: 0.3464 S12: 0.3513 S13: -0.6522 REMARK 3 S21: 0.0551 S22: -0.2303 S23: -0.0574 REMARK 3 S31: 0.6236 S32: 0.2679 S33: -0.1181 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN Z AND RESID 201:232) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7959 46.8342 -17.0146 REMARK 3 T TENSOR REMARK 3 T11: 0.5226 T22: 0.5341 REMARK 3 T33: 0.5214 T12: 0.0669 REMARK 3 T13: 0.0048 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 2.4789 L22: 2.6948 REMARK 3 L33: 2.3618 L12: -0.3596 REMARK 3 L13: 0.1291 L23: 0.2223 REMARK 3 S TENSOR REMARK 3 S11: 0.2699 S12: 0.2727 S13: 0.3438 REMARK 3 S21: -0.4892 S22: -0.4311 S23: 0.1028 REMARK 3 S31: -0.3379 S32: 0.1412 S33: 0.1321 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN Z AND RESID 233:244) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6806 51.8763 -21.5785 REMARK 3 T TENSOR REMARK 3 T11: 0.8580 T22: 0.6227 REMARK 3 T33: 0.7445 T12: 0.1654 REMARK 3 T13: -0.1576 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 3.7562 L22: 3.8119 REMARK 3 L33: 2.9670 L12: 1.6572 REMARK 3 L13: -1.0071 L23: -1.5339 REMARK 3 S TENSOR REMARK 3 S11: 0.2288 S12: 0.6599 S13: 0.2608 REMARK 3 S21: -0.6089 S22: -0.0457 S23: 0.1501 REMARK 3 S31: -0.1493 S32: -0.3091 S33: -0.2068 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN Z AND RESID 245:270) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5603 61.0467 -16.3103 REMARK 3 T TENSOR REMARK 3 T11: 0.7520 T22: 0.5832 REMARK 3 T33: 0.8708 T12: 0.0591 REMARK 3 T13: 0.0926 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 5.1871 L22: 3.9175 REMARK 3 L33: 5.7118 L12: 0.2475 REMARK 3 L13: 1.5753 L23: -0.4078 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: 0.0792 S13: 0.9016 REMARK 3 S21: -0.2016 S22: -0.1296 S23: 0.5709 REMARK 3 S31: -1.1978 S32: -0.2766 S33: 0.1473 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN Z AND RESID 271:277) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0681 55.9996 -5.3309 REMARK 3 T TENSOR REMARK 3 T11: 0.5931 T22: 0.4383 REMARK 3 T33: 0.6819 T12: -0.0425 REMARK 3 T13: -0.0188 T23: -0.1983 REMARK 3 L TENSOR REMARK 3 L11: 3.3452 L22: 1.4861 REMARK 3 L33: 2.0304 L12: -0.4695 REMARK 3 L13: 1.1886 L23: -0.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.5028 S13: 0.2918 REMARK 3 S21: 0.1884 S22: 0.1701 S23: -0.1107 REMARK 3 S31: -0.4749 S32: -0.0940 S33: -0.1694 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN Z AND RESID 278:300) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1479 40.2671 -0.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.8938 REMARK 3 T33: 0.5416 T12: -0.0732 REMARK 3 T13: -0.0470 T23: -0.1389 REMARK 3 L TENSOR REMARK 3 L11: 1.3145 L22: 1.1495 REMARK 3 L33: 3.0748 L12: 0.1230 REMARK 3 L13: 0.2120 L23: -0.5094 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.1045 S13: 0.6601 REMARK 3 S21: 0.2898 S22: -0.2488 S23: -0.6820 REMARK 3 S31: -0.1718 S32: 1.1296 S33: 0.2742 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN Z AND RESID 301:312) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2909 52.2303 -0.0132 REMARK 3 T TENSOR REMARK 3 T11: 0.6315 T22: 0.8128 REMARK 3 T33: 0.8040 T12: -0.2050 REMARK 3 T13: -0.0370 T23: -0.3253 REMARK 3 L TENSOR REMARK 3 L11: 6.0164 L22: 2.4373 REMARK 3 L33: 0.2236 L12: 0.6593 REMARK 3 L13: -1.1185 L23: -0.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: 0.1545 S13: 0.8379 REMARK 3 S21: 0.3198 S22: 0.2469 S23: -0.4123 REMARK 3 S31: -1.0974 S32: 1.0050 S33: -0.3291 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN Z AND RESID 313:326) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6037 37.0430 10.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.7125 T22: 0.9384 REMARK 3 T33: 0.6160 T12: -0.1499 REMARK 3 T13: -0.0825 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.2898 L22: 4.4469 REMARK 3 L33: 1.7755 L12: 0.7577 REMARK 3 L13: -0.0386 L23: -0.9599 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: -0.0340 S13: 0.0185 REMARK 3 S21: 0.4050 S22: 0.5734 S23: -0.2385 REMARK 3 S31: 0.2067 S32: 1.0215 S33: -0.5577 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN Z AND RESID 327:339) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7612 29.4130 14.9997 REMARK 3 T TENSOR REMARK 3 T11: 0.8042 T22: 0.7881 REMARK 3 T33: 0.5683 T12: -0.0929 REMARK 3 T13: 0.0281 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 4.6138 L22: 5.8948 REMARK 3 L33: 7.4487 L12: 1.5970 REMARK 3 L13: 0.2926 L23: -1.1972 REMARK 3 S TENSOR REMARK 3 S11: 1.0350 S12: -0.2986 S13: 0.1045 REMARK 3 S21: 0.9903 S22: 0.0811 S23: 0.8139 REMARK 3 S31: -0.0426 S32: -0.0464 S33: -0.9773 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN Z AND RESID 340:345) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0931 20.2088 11.5537 REMARK 3 T TENSOR REMARK 3 T11: 1.0789 T22: 1.6142 REMARK 3 T33: 1.6019 T12: 0.1883 REMARK 3 T13: -0.1242 T23: 0.2609 REMARK 3 L TENSOR REMARK 3 L11: 2.0091 L22: 0.6217 REMARK 3 L33: 1.5389 L12: 0.8954 REMARK 3 L13: -0.5254 L23: 0.3179 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: -0.1040 S13: -0.3702 REMARK 3 S21: -0.0486 S22: 0.0251 S23: -0.1774 REMARK 3 S31: 0.1772 S32: 0.3315 S33: -0.0458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 7.0, 10 MM REMARK 280 POTASSIUM CHLORIDE, 2-4% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.04050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.95200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.95200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.06075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.95200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.95200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.02025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.95200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.95200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.06075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.95200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.95200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.02025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.04050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 1 REMARK 465 ALA Z 346 REMARK 465 MET Z 347 REMARK 465 PRO Z 348 REMARK 465 ALA Z 349 REMARK 465 HIS Z 350 REMARK 465 SER Z 351 REMARK 465 ARG Z 352 REMARK 465 GLU Z 353 REMARK 465 ASN Z 354 REMARK 465 GLN Z 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE Z 357 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN Z 246 O HOH Z 501 2.12 REMARK 500 NZ LYS Z 330 O HOH Z 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 1 P DA B 1 OP3 -0.118 REMARK 500 DC B 2 O3' DC B 2 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN Z 246 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Z 53 28.60 -154.78 REMARK 500 SER Z 139 11.54 -69.87 REMARK 500 TYR Z 149 -108.94 -137.54 REMARK 500 ASP Z 304 30.72 -91.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 80 SG REMARK 620 2 HOH Z 578 O 89.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD2 REMARK 620 2 ASP Z 171 OD2 84.4 REMARK 620 3 ASP Z 173 OD2 134.6 101.0 REMARK 620 4 HOH Z 510 O 150.6 110.8 69.1 REMARK 620 5 DC B 2 OP1 83.4 90.1 140.8 71.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD1 REMARK 620 2 HOH Z 513 O 87.8 REMARK 620 3 HOH Z 519 O 87.5 175.0 REMARK 620 4 HOH Z 532 O 98.9 80.9 101.4 REMARK 620 5 DA B 1 O3' 160.6 85.3 98.7 98.0 REMARK 620 6 DC B 2 OP1 98.7 85.2 93.9 157.2 62.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA Z 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Z 222 O REMARK 620 2 SER Z 229 OG 79.7 REMARK 620 3 ILE Z 233 O 88.2 74.0 REMARK 620 4 HOH Z 545 O 85.3 71.4 145.4 REMARK 620 5 DA A 5 OP2 172.4 101.9 85.2 102.3 REMARK 620 6 HOH A 205 O 119.8 140.7 134.7 76.5 63.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA Z 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UZV RELATED DB: PDB REMARK 900 RELATED ID: 5V04 RELATED DB: PDB REMARK 900 RELATED ID: 5V05 RELATED DB: PDB REMARK 900 RELATED ID: 5V06 RELATED DB: PDB REMARK 900 RELATED ID: 5V07 RELATED DB: PDB REMARK 900 RELATED ID: 5V08 RELATED DB: PDB REMARK 900 RELATED ID: 5V0A RELATED DB: PDB REMARK 900 RELATED ID: 5V0B RELATED DB: PDB REMARK 900 RELATED ID: 5V0C RELATED DB: PDB REMARK 900 RELATED ID: 5V0D RELATED DB: PDB REMARK 900 RELATED ID: 5V0E RELATED DB: PDB DBREF 5V09 Z 1 352 UNP Q9UQ84 EXO1_HUMAN 1 352 DBREF 5V09 A 1 13 PDB 5V09 5V09 1 13 DBREF 5V09 B 1 10 PDB 5V09 5V09 1 10 SEQADV 5V09 ALA Z 225 UNP Q9UQ84 ASP 225 ENGINEERED MUTATION SEQADV 5V09 GLU Z 353 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V09 ASN Z 354 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V09 LEU Z 355 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V09 TYR Z 356 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V09 PHE Z 357 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V09 GLN Z 358 UNP Q9UQ84 EXPRESSION TAG SEQRES 1 Z 358 MET GLY ILE GLN GLY LEU LEU GLN PHE ILE LYS GLU ALA SEQRES 2 Z 358 SER GLU PRO ILE HIS VAL ARG LYS TYR LYS GLY GLN VAL SEQRES 3 Z 358 VAL ALA VAL ASP THR TYR CYS TRP LEU HIS LYS GLY ALA SEQRES 4 Z 358 ILE ALA CYS ALA GLU LYS LEU ALA LYS GLY GLU PRO THR SEQRES 5 Z 358 ASP ARG TYR VAL GLY PHE CYS MET LYS PHE VAL ASN MET SEQRES 6 Z 358 LEU LEU SER HIS GLY ILE LYS PRO ILE LEU VAL PHE ASP SEQRES 7 Z 358 GLY CYS THR LEU PRO SER LYS LYS GLU VAL GLU ARG SER SEQRES 8 Z 358 ARG ARG GLU ARG ARG GLN ALA ASN LEU LEU LYS GLY LYS SEQRES 9 Z 358 GLN LEU LEU ARG GLU GLY LYS VAL SER GLU ALA ARG GLU SEQRES 10 Z 358 CYS PHE THR ARG SER ILE ASN ILE THR HIS ALA MET ALA SEQRES 11 Z 358 HIS LYS VAL ILE LYS ALA ALA ARG SER GLN GLY VAL ASP SEQRES 12 Z 358 CYS LEU VAL ALA PRO TYR GLU ALA ASP ALA GLN LEU ALA SEQRES 13 Z 358 TYR LEU ASN LYS ALA GLY ILE VAL GLN ALA ILE ILE THR SEQRES 14 Z 358 GLU ASP SER ASP LEU LEU ALA PHE GLY CYS LYS LYS VAL SEQRES 15 Z 358 ILE LEU LYS MET ASP GLN PHE GLY ASN GLY LEU GLU ILE SEQRES 16 Z 358 ASP GLN ALA ARG LEU GLY MET CYS ARG GLN LEU GLY ASP SEQRES 17 Z 358 VAL PHE THR GLU GLU LYS PHE ARG TYR MET CYS ILE LEU SEQRES 18 Z 358 SER GLY CYS ALA TYR LEU SER SER LEU ARG GLY ILE GLY SEQRES 19 Z 358 LEU ALA LYS ALA CYS LYS VAL LEU ARG LEU ALA ASN ASN SEQRES 20 Z 358 PRO ASP ILE VAL LYS VAL ILE LYS LYS ILE GLY HIS TYR SEQRES 21 Z 358 LEU LYS MET ASN ILE THR VAL PRO GLU ASP TYR ILE ASN SEQRES 22 Z 358 GLY PHE ILE ARG ALA ASN ASN THR PHE LEU TYR GLN LEU SEQRES 23 Z 358 VAL PHE ASP PRO ILE LYS ARG LYS LEU ILE PRO LEU ASN SEQRES 24 Z 358 ALA TYR GLU ASP ASP VAL ASP PRO GLU THR LEU SER TYR SEQRES 25 Z 358 ALA GLY GLN TYR VAL ASP ASP SER ILE ALA LEU GLN ILE SEQRES 26 Z 358 ALA LEU GLY ASN LYS ASP ILE ASN THR PHE GLU GLN ILE SEQRES 27 Z 358 ASP ASP TYR ASN PRO ASP THR ALA MET PRO ALA HIS SER SEQRES 28 Z 358 ARG GLU ASN LEU TYR PHE GLN SEQRES 1 A 13 DC DG DC DT DA DG DT DC DG DT DC DA DT SEQRES 1 B 10 DA DC DG DA DC DT DA DG DC DG HET MN Z 401 1 HET MN Z 402 1 HET NA Z 403 1 HET MN A 101 1 HET MN B 101 1 HET MN B 102 1 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION FORMUL 4 MN 5(MN 2+) FORMUL 6 NA NA 1+ FORMUL 10 HOH *99(H2 O) HELIX 1 AA1 GLY Z 5 ILE Z 10 1 6 HELIX 2 AA2 ARG Z 20 LYS Z 23 5 4 HELIX 3 AA3 THR Z 31 CYS Z 42 1 12 HELIX 4 AA4 CYS Z 42 GLY Z 49 1 8 HELIX 5 AA5 ASP Z 53 HIS Z 69 1 17 HELIX 6 AA6 LEU Z 82 GLU Z 109 1 28 HELIX 7 AA7 VAL Z 112 THR Z 120 1 9 HELIX 8 AA8 THR Z 126 SER Z 139 1 14 HELIX 9 AA9 GLU Z 150 ALA Z 161 1 12 HELIX 10 AB1 SER Z 172 PHE Z 177 1 6 HELIX 11 AB2 ALA Z 198 GLY Z 207 5 10 HELIX 12 AB3 THR Z 211 GLY Z 223 1 13 HELIX 13 AB4 GLY Z 234 ALA Z 245 1 12 HELIX 14 AB5 ASP Z 249 LYS Z 256 1 8 HELIX 15 AB6 LYS Z 256 LYS Z 262 1 7 HELIX 16 AB7 PRO Z 268 GLN Z 285 1 18 HELIX 17 AB8 ASP Z 306 LEU Z 310 5 5 HELIX 18 AB9 ASP Z 318 LEU Z 327 1 10 SHEET 1 AA1 7 SER Z 14 HIS Z 18 0 SHEET 2 AA1 7 ASN Z 191 ASP Z 196 -1 O GLU Z 194 N GLU Z 15 SHEET 3 AA1 7 LYS Z 181 LEU Z 184 -1 N LEU Z 184 O LEU Z 193 SHEET 4 AA1 7 ALA Z 166 ILE Z 168 1 N ILE Z 167 O ILE Z 183 SHEET 5 AA1 7 VAL Z 26 ASP Z 30 1 N ASP Z 30 O ILE Z 168 SHEET 6 AA1 7 LYS Z 72 PHE Z 77 1 O ILE Z 74 N VAL Z 29 SHEET 7 AA1 7 CYS Z 144 VAL Z 146 1 O LEU Z 145 N LEU Z 75 SHEET 1 AA2 2 LEU Z 286 ASP Z 289 0 SHEET 2 AA2 2 LYS Z 294 PRO Z 297 -1 O ILE Z 296 N VAL Z 287 LINK SG CYS Z 80 MN MN Z 402 1555 1555 2.66 LINK OD2 ASP Z 152 MN MN Z 401 1555 1555 2.13 LINK OD1 ASP Z 152 MN MN B 101 1555 1555 2.19 LINK OD2 ASP Z 171 MN MN Z 401 1555 1555 2.14 LINK OD2 ASP Z 173 MN MN Z 401 1555 1555 2.11 LINK O SER Z 222 NA NA Z 403 1555 1555 2.46 LINK OG SER Z 229 NA NA Z 403 1555 1555 2.51 LINK O ILE Z 233 NA NA Z 403 1555 1555 2.36 LINK MN MN Z 401 O HOH Z 510 1555 1555 2.30 LINK MN MN Z 401 OP1 DC B 2 1555 1555 2.04 LINK MN MN Z 402 O HOH Z 578 1555 1555 2.42 LINK NA NA Z 403 O HOH Z 545 1555 1555 2.34 LINK NA NA Z 403 OP2 DA A 5 1555 1555 2.54 LINK NA NA Z 403 O HOH A 205 1555 1555 2.36 LINK O HOH Z 513 MN MN B 101 1555 1555 2.15 LINK O HOH Z 519 MN MN B 101 1555 1555 2.16 LINK O HOH Z 532 MN MN B 101 1555 1555 2.14 LINK O2 DC A 11 MN MN A 101 1555 1555 2.31 LINK O3' DA B 1 MN MN B 101 1555 1555 2.31 LINK OP1 DA B 1 MN MN B 102 1555 1555 2.18 LINK OP1 DC B 2 MN MN B 101 1555 1555 2.45 CISPEP 1 ASN Z 247 PRO Z 248 0 -15.42 SITE 1 AC1 5 DC B 2 ASP Z 152 ASP Z 171 ASP Z 173 SITE 2 AC1 5 HOH Z 510 SITE 1 AC2 2 CYS Z 80 HOH Z 578 SITE 1 AC3 7 DA A 5 HOH A 205 SER Z 222 SER Z 229 SITE 2 AC3 7 ILE Z 233 GLY Z 234 HOH Z 545 SITE 1 AC4 1 DC A 11 SITE 1 AC5 6 DA B 1 DC B 2 ASP Z 152 HOH Z 513 SITE 2 AC5 6 HOH Z 519 HOH Z 532 SITE 1 AC6 1 DA B 1 CRYST1 73.904 73.904 180.081 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005553 0.00000