PDB Short entry for 5V1B HEADER OXIDOREDUCTASE/INHIBITOR 01-MAR-17 5V1B TITLE STRUCTURE OF PHD1 IN COMPLEX WITH 1,2,4-TRIAZOLO-[1,5-A]PYRIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 167-403; COMPND 5 SYNONYM: ESTROGEN-INDUCED TAG 6,HPH-3,HYPOXIA-INDUCIBLE FACTOR PROLYL COMPND 6 HYDROXYLASE 1,HPH-1,PROLYL HYDROXYLASE DOMAIN-CONTAINING PROTEIN 1, COMPND 7 PHD1; COMPND 8 EC: 1.14.11.29; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN2, EIT6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIF PROLYLHYDROXYLASE DOMAIN-1, INHIBITOR, MOMODENTATE BINDING, KEYWDS 2 OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.SKENE REVDAT 3 06-MAR-24 5V1B 1 LINK REVDAT 2 26-JUL-17 5V1B 1 JRNL REVDAT 1 21-JUN-17 5V1B 0 JRNL AUTH S.AHMED,A.AYSCOUGH,G.R.BARKER,H.E.CANNING,R.DAVENPORT, JRNL AUTH 2 R.DOWNHAM,D.HARRISON,K.JENKINS,N.KINSELLA,D.G.LIVERMORE, JRNL AUTH 3 S.WRIGHT,A.D.IVETAC,R.SKENE,S.J.WILKENS,N.A.WEBSTER, JRNL AUTH 4 A.G.HENDRICK JRNL TITL 1,2,4-TRIAZOLO-[1,5-A]PYRIDINE HIF PROLYLHYDROXYLASE JRNL TITL 2 DOMAIN-1 (PHD-1) INHIBITORS WITH A NOVEL MONODENTATE BINDING JRNL TITL 3 INTERACTION. JRNL REF J. MED. CHEM. V. 60 5663 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28594552 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00352 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 8475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.4500 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.5280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : 2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.694 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1841 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2494 ; 1.302 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 6.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.680 ;21.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;16.851 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1436 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 403 REMARK 3 RESIDUE RANGE : A 501 A 504 REMARK 3 RESIDUE RANGE : A 601 A 692 REMARK 3 ORIGIN FOR THE GROUP (A): 18.592 18.167 -2.172 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.1257 REMARK 3 T33: 0.0325 T12: 0.0096 REMARK 3 T13: 0.0285 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.6538 L22: 2.0436 REMARK 3 L33: 1.5673 L12: -0.3594 REMARK 3 L13: -0.1616 L23: -0.1715 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: -0.0119 S13: 0.1079 REMARK 3 S21: -0.0149 S22: -0.1062 S23: 0.0106 REMARK 3 S31: 0.0110 S32: -0.0684 S33: 0.0112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5V1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350, BIS-TRIS 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.11150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.11150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.35850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.04100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.35850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.04100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.11150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.35850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.04100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.11150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.35850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.04100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ALA A 169 REMARK 465 LEU A 170 REMARK 465 ASP A 221 REMARK 465 GLY A 222 REMARK 465 GLN A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 229 REMARK 465 ILE A 230 REMARK 465 PRO A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 181 -59.87 -133.28 REMARK 500 ARG A 236 -127.81 -91.52 REMARK 500 ARG A 354 -32.53 -34.77 REMARK 500 LYS A 386 -135.89 -78.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 386 TYR A 387 144.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 297 NE2 REMARK 620 2 ASP A 299 OD1 111.2 REMARK 620 3 HIS A 358 NE2 81.0 88.7 REMARK 620 4 8UY A 504 N14 85.2 163.3 90.9 REMARK 620 5 HOH A 619 O 159.9 85.6 111.4 79.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8UY A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V18 RELATED DB: PDB DBREF 5V1B A 167 403 UNP Q96KS0 EGLN2_HUMAN 167 403 SEQADV 5V1B GLY A 164 UNP Q96KS0 EXPRESSION TAG SEQADV 5V1B GLY A 165 UNP Q96KS0 EXPRESSION TAG SEQADV 5V1B SER A 166 UNP Q96KS0 EXPRESSION TAG SEQADV 5V1B VAL A 194 UNP Q96KS0 LYS 194 CONFLICT SEQADV 5V1B LYS A 275 UNP Q96KS0 VAL 275 CONFLICT SEQADV 5V1B ASP A 378 UNP Q96KS0 LYS 378 CONFLICT SEQADV 5V1B ARG A 382 UNP Q96KS0 ALA 382 CONFLICT SEQRES 1 A 240 GLY GLY SER GLU GLU ALA LEU PRO SER ALA PRO GLU ARG SEQRES 2 A 240 LEU ALA LEU ASP TYR ILE VAL PRO CYS MET ARG TYR TYR SEQRES 3 A 240 GLY ILE CYS VAL VAL ASP SER PHE LEU GLY ALA ALA LEU SEQRES 4 A 240 GLY GLY ARG VAL LEU ALA GLU VAL GLU ALA LEU LYS ARG SEQRES 5 A 240 GLY GLY ARG LEU ARG ASP GLY GLN LEU VAL SER GLN ARG SEQRES 6 A 240 ALA ILE PRO PRO ARG SER ILE ARG GLY ASP GLN ILE ALA SEQRES 7 A 240 TRP VAL GLU GLY HIS GLU PRO GLY CYS ARG SER ILE GLY SEQRES 8 A 240 ALA LEU MET ALA HIS VAL ASP ALA VAL ILE ARG HIS CYS SEQRES 9 A 240 ALA GLY ARG LEU GLY SER TYR LYS ILE ASN GLY ARG THR SEQRES 10 A 240 LYS ALA MET VAL ALA CYS TYR PRO GLY ASN GLY LEU GLY SEQRES 11 A 240 TYR VAL ARG HIS VAL ASP ASN PRO HIS GLY ASP GLY ARG SEQRES 12 A 240 CYS ILE THR CYS ILE TYR TYR LEU ASN GLN ASN TRP ASP SEQRES 13 A 240 VAL LYS VAL HIS GLY GLY LEU LEU GLN ILE PHE PRO GLU SEQRES 14 A 240 GLY ARG PRO VAL VAL ALA ASN ILE GLU PRO LEU PHE ASP SEQRES 15 A 240 ARG LEU LEU ILE PHE TRP SER ASP ARG ARG ASN PRO HIS SEQRES 16 A 240 GLU VAL LYS PRO ALA TYR ALA THR ARG TYR ALA ILE THR SEQRES 17 A 240 VAL TRP TYR PHE ASP ALA ASP GLU ARG ALA ARG ALA LYS SEQRES 18 A 240 ASP LYS TYR GLN LEU ALA SER GLY GLN LYS GLY VAL GLN SEQRES 19 A 240 VAL PRO VAL SER GLN PRO HET SO4 A 501 5 HET SO4 A 502 5 HET FE A 503 1 HET 8UY A 504 17 HETNAM SO4 SULFATE ION HETNAM FE FE (III) ION HETNAM 8UY 4-([1,2,4]TRIAZOLO[1,5-A]PYRIDIN-5-YL)BENZONITRILE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 FE FE 3+ FORMUL 5 8UY C13 H8 N4 FORMUL 6 HOH *92(H2 O) HELIX 1 AA1 SER A 172 TYR A 181 1 10 HELIX 2 AA2 TYR A 181 TYR A 189 1 9 HELIX 3 AA3 LEU A 198 GLY A 216 1 19 HELIX 4 AA4 CYS A 250 HIS A 266 1 17 HELIX 5 AA5 ASP A 319 GLY A 324 1 6 HELIX 6 AA6 ASP A 376 LYS A 386 1 11 HELIX 7 AA7 SER A 391 VAL A 396 5 6 SHEET 1 AA1 6 ILE A 191 ASP A 195 0 SHEET 2 AA1 6 ARG A 346 TRP A 351 -1 O LEU A 347 N VAL A 194 SHEET 3 AA1 6 ARG A 306 TYR A 313 -1 N THR A 309 O PHE A 350 SHEET 4 AA1 6 ARG A 367 PHE A 375 -1 O ILE A 370 N TYR A 312 SHEET 5 AA1 6 ALA A 282 TYR A 287 -1 N MET A 283 O THR A 371 SHEET 6 AA1 6 GLN A 239 VAL A 243 -1 N GLN A 239 O CYS A 286 SHEET 1 AA2 2 GLY A 278 ARG A 279 0 SHEET 2 AA2 2 VAL A 398 PRO A 399 -1 O VAL A 398 N ARG A 279 SHEET 1 AA3 4 TYR A 294 HIS A 297 0 SHEET 2 AA3 4 HIS A 358 VAL A 360 -1 O VAL A 360 N TYR A 294 SHEET 3 AA3 4 LEU A 327 ILE A 329 -1 N GLN A 328 O GLU A 359 SHEET 4 AA3 4 ALA A 338 ILE A 340 -1 O ILE A 340 N LEU A 327 LINK NE2 HIS A 297 FE FE A 503 1555 1555 2.48 LINK OD1 ASP A 299 FE FE A 503 1555 1555 2.11 LINK NE2 HIS A 358 FE FE A 503 1555 1555 2.28 LINK FE FE A 503 N14 8UY A 504 1555 1555 2.10 LINK FE FE A 503 O HOH A 619 1555 1555 2.67 SITE 1 AC1 4 ARG A 220 ILE A 240 TRP A 242 GLN A 393 SITE 1 AC2 4 LYS A 214 GLN A 239 ARG A 334 PRO A 335 SITE 1 AC3 6 HIS A 297 ASP A 299 HIS A 358 8UY A 504 SITE 2 AC3 6 HOH A 619 HOH A 672 SITE 1 AC4 11 TYR A 287 TYR A 294 HIS A 297 ILE A 311 SITE 2 AC4 11 TYR A 313 ASN A 315 HIS A 358 VAL A 360 SITE 3 AC4 11 ARG A 367 FE A 503 HOH A 619 CRYST1 66.717 112.082 66.223 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015100 0.00000