PDB Short entry for 5V89 HEADER LIGASE / PROTEIN BINDING 21-MAR-17 5V89 TITLE STRUCTURE OF DCN4 PONY DOMAIN BOUND TO CUL1 WHB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DCN1-LIKE PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 102-292; COMPND 5 SYNONYM: DCUN1 DOMAIN-CONTAINING PROTEIN 4,DEFECTIVE IN CULLIN COMPND 6 NEDDYLATION PROTEIN 1-LIKE PROTEIN 4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CULLIN-1; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: WHB SUBDOMAIN RESIDUES 702-776; COMPND 12 SYNONYM: CUL-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCUN1D4, KIAA0276; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CUL1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS E3 LIGASE, LIGASE - PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.K.GUY,B.A.SCHULMAN,D.C.SCOTT,J.T.HAMMILL REVDAT 6 04-OCT-23 5V89 1 REMARK REVDAT 5 01-JAN-20 5V89 1 REMARK REVDAT 4 20-SEP-17 5V89 1 REMARK REVDAT 3 06-SEP-17 5V89 1 JRNL REVDAT 2 21-JUN-17 5V89 1 JRNL REVDAT 1 24-MAY-17 5V89 0 JRNL AUTH D.C.SCOTT,J.T.HAMMILL,J.MIN,D.Y.RHEE,M.CONNELLY, JRNL AUTH 2 V.O.SVIDERSKIY,D.BHASIN,Y.CHEN,S.S.ONG,S.C.CHAI,A.N.GOKTUG, JRNL AUTH 3 G.HUANG,J.K.MONDA,J.LOW,H.S.KIM,J.A.PAULO,J.R.CANNON, JRNL AUTH 4 A.A.SHELAT,T.CHEN,I.R.KELSALL,A.F.ALPI,V.PAGALA,X.WANG, JRNL AUTH 5 J.PENG,B.SINGH,J.W.HARPER,B.A.SCHULMAN,R.K.GUY JRNL TITL BLOCKING AN N-TERMINAL ACETYLATION-DEPENDENT PROTEIN JRNL TITL 2 INTERACTION INHIBITS AN E3 LIGASE. JRNL REF NAT. CHEM. BIOL. V. 13 850 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28581483 JRNL DOI 10.1038/NCHEMBIO.2386 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 36917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9200 - 3.6413 1.00 2935 182 0.1671 0.1968 REMARK 3 2 3.6413 - 2.8918 1.00 2919 152 0.1485 0.1954 REMARK 3 3 2.8918 - 2.5267 1.00 2884 161 0.1475 0.1762 REMARK 3 4 2.5267 - 2.2959 1.00 2862 151 0.1388 0.1784 REMARK 3 5 2.2959 - 2.1314 1.00 2888 172 0.1312 0.1927 REMARK 3 6 2.1314 - 2.0058 1.00 2899 158 0.1339 0.1808 REMARK 3 7 2.0058 - 1.9054 1.00 2870 149 0.1394 0.1920 REMARK 3 8 1.9054 - 1.8225 1.00 2904 113 0.1427 0.2220 REMARK 3 9 1.8225 - 1.7524 0.99 2846 140 0.1547 0.1873 REMARK 3 10 1.7524 - 1.6919 0.95 2771 147 0.1630 0.2048 REMARK 3 11 1.6919 - 1.6390 0.87 2471 143 0.1655 0.2551 REMARK 3 12 1.6390 - 1.5922 0.74 2121 126 0.1838 0.2024 REMARK 3 13 1.5922 - 1.5503 0.58 1679 74 0.2006 0.2427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2168 REMARK 3 ANGLE : 1.131 2940 REMARK 3 CHIRALITY : 0.044 329 REMARK 3 PLANARITY : 0.006 369 REMARK 3 DIHEDRAL : 12.728 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36927 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TDU.PDB REMARK 200 REMARK 200 REMARK: THE AUTHORS STATE THAT THE DENSITY SURROUNDING THE CUL1WHB REMARK 200 SUBDOMAIN IN THIS STRUCTURE WAS RELATIVELY WEAK, PRESUMABLY DUE REMARK 200 TO ITS LACK OF PARTICIPATION IN FORMING CRYSTAL CONTACTS. REMARK 200 THEREFORE WE MODELED AND BUILT THIS CHAIN LARGELY FROM A REMARK 200 PREVIOUS HIGH RESOLUTION AND HIGH QUALITY STRUCTURE OF CUL1WHB, REMARK 200 3TDU. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M LISO4, 10MM TCEP, REMARK 280 10MM BIS-TRIS PROPANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.46500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.46500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 100 REMARK 465 MET A 291 REMARK 465 SER A 292 REMARK 465 GLY C 700 REMARK 465 SER C 701 REMARK 465 ASN C 702 REMARK 465 SER C 739 REMARK 465 SER C 740 REMARK 465 ARG C 741 REMARK 465 PHE C 742 REMARK 465 LYS C 743 REMARK 465 GLY C 767 REMARK 465 GLU C 768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 708 CG CD CE NZ REMARK 470 ARG C 717 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 720 CG CD CE NZ REMARK 470 MET C 721 CG SD CE REMARK 470 ARG C 722 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 723 CG CD CE NZ REMARK 470 LYS C 726 CG CD CE NZ REMARK 470 GLN C 737 CG CD OE1 NE2 REMARK 470 ARG C 745 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 766 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 182 O HOH A 305 1.54 REMARK 500 O HOH A 578 O HOH A 579 1.85 REMARK 500 O HOH A 490 O HOH A 544 1.90 REMARK 500 N LYS C 769 O HOH C 801 1.94 REMARK 500 O HOH C 801 O HOH C 803 2.01 REMARK 500 O HOH C 810 O HOH C 826 2.03 REMARK 500 O HOH C 819 O HOH C 829 2.05 REMARK 500 O HOH A 312 O HOH A 378 2.06 REMARK 500 O HOH A 361 O HOH A 446 2.07 REMARK 500 O HOH A 497 O HOH A 548 2.12 REMARK 500 O HOH A 487 O HOH A 565 2.13 REMARK 500 O HOH A 308 O HOH A 359 2.13 REMARK 500 O HOH A 474 O HOH A 543 2.15 REMARK 500 OE1 GLN A 159 O HOH A 301 2.18 REMARK 500 O HOH A 334 O HOH A 391 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 489 O HOH A 504 4545 2.02 REMARK 500 O HOH A 498 O HOH A 562 2554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 723 -53.75 70.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 578 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH C 833 DISTANCE = 6.09 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V88 RELATED DB: PDB REMARK 900 RELATED ID: 5V86 RELATED DB: PDB REMARK 900 RELATED ID: 5V83 RELATED DB: PDB DBREF 5V89 A 102 292 UNP Q92564 DCNL4_HUMAN 102 292 DBREF 5V89 C 702 776 UNP Q13616 CUL1_HUMAN 702 776 SEQADV 5V89 GLY A 100 UNP Q92564 EXPRESSION TAG SEQADV 5V89 SER A 101 UNP Q92564 EXPRESSION TAG SEQADV 5V89 GLY C 700 UNP Q13616 EXPRESSION TAG SEQADV 5V89 SER C 701 UNP Q13616 EXPRESSION TAG SEQRES 1 A 193 GLY SER SER SER LYS ARG CYS LEU GLU TRP PHE TYR GLU SEQRES 2 A 193 TYR ALA GLY THR ASP ASP VAL VAL GLY PRO GLU GLY MET SEQRES 3 A 193 GLU LYS PHE CYS GLU ASP ILE GLY VAL GLU PRO GLU ASN SEQRES 4 A 193 VAL VAL MET LEU VAL LEU ALA TRP LYS LEU ASP ALA GLN SEQRES 5 A 193 ASN MET GLY TYR PHE THR LEU GLN GLU TRP LEU LYS GLY SEQRES 6 A 193 MET THR SER LEU GLN CYS ASP THR THR GLU LYS LEU ARG SEQRES 7 A 193 ASN THR LEU ASP TYR LEU ARG SER PHE LEU ASN ASP SER SEQRES 8 A 193 THR ASN PHE LYS LEU ILE TYR ARG TYR ALA PHE ASP PHE SEQRES 9 A 193 ALA ARG GLU LYS ASP GLN ARG SER LEU ASP ILE ASN THR SEQRES 10 A 193 ALA LYS CYS MET LEU GLY LEU LEU LEU GLY LYS ILE TRP SEQRES 11 A 193 PRO LEU PHE PRO VAL PHE HIS GLN PHE LEU GLU GLN SER SEQRES 12 A 193 LYS TYR LYS VAL ILE ASN LYS ASP GLN TRP CYS ASN VAL SEQRES 13 A 193 LEU GLU PHE SER ARG THR ILE ASN LEU ASP LEU SER ASN SEQRES 14 A 193 TYR ASP GLU ASP GLY ALA TRP PRO VAL LEU LEU ASP GLU SEQRES 15 A 193 PHE VAL GLU TRP TYR LYS ASP LYS GLN MET SER SEQRES 1 C 77 GLY SER ASN ILE GLU GLU ASP ARG LYS LEU LEU ILE GLN SEQRES 2 C 77 ALA ALA ILE VAL ARG ILE MET LYS MET ARG LYS VAL LEU SEQRES 3 C 77 LYS HIS GLN GLN LEU LEU GLY GLU VAL LEU THR GLN LEU SEQRES 4 C 77 SER SER ARG PHE LYS PRO ARG VAL PRO VAL ILE LYS LYS SEQRES 5 C 77 CYS ILE ASP ILE LEU ILE GLU LYS GLU TYR LEU GLU ARG SEQRES 6 C 77 VAL ASP GLY GLU LYS ASP THR TYR SER TYR LEU ALA FORMUL 3 HOH *312(H2 O) HELIX 1 AA1 SER A 103 GLY A 115 1 13 HELIX 2 AA2 GLY A 121 GLY A 133 1 13 HELIX 3 AA3 ASN A 138 LEU A 148 1 11 HELIX 4 AA4 LEU A 158 LEU A 168 1 11 HELIX 5 AA5 THR A 172 ASN A 178 1 7 HELIX 6 AA6 THR A 179 PHE A 186 1 8 HELIX 7 AA7 ASP A 189 ARG A 205 1 17 HELIX 8 AA8 ILE A 214 GLY A 226 1 13 HELIX 9 AA9 LEU A 231 SER A 242 1 12 HELIX 10 AB1 LYS A 249 ILE A 262 1 14 HELIX 11 AB2 PRO A 276 GLN A 290 1 15 HELIX 12 AB3 GLU C 704 LYS C 723 1 20 HELIX 13 AB4 HIS C 727 LEU C 738 1 12 HELIX 14 AB5 ARG C 745 LYS C 759 1 15 SHEET 1 AA1 2 VAL A 119 VAL A 120 0 SHEET 2 AA1 2 PHE A 156 THR A 157 -1 O PHE A 156 N VAL A 120 SHEET 1 AA2 2 SER A 211 ASP A 213 0 SHEET 2 AA2 2 VAL A 246 ASN A 248 -1 O ILE A 247 N LEU A 212 SHEET 1 AA3 3 VAL C 724 LYS C 726 0 SHEET 2 AA3 3 THR C 771 TYR C 774 -1 O TYR C 772 N LEU C 725 SHEET 3 AA3 3 LEU C 762 ARG C 764 -1 N GLU C 763 O SER C 773 CRYST1 118.930 62.476 38.580 90.00 105.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008408 0.000000 0.002328 0.00000 SCALE2 0.000000 0.016006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026896 0.00000