PDB Short entry for 5VS1
HEADER    TRANSFERASE, LYASE/DNA                  11-MAY-17   5VS1              
TITLE     HUMAN DNA POLYMERASE BETA PRE-CATALYTIC 8-OXOG:DA EXTENSION COMPLEX   
TITLE    2 WITH DTTP BOUND IN NON-PLANAR CONFORMATION                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)                         
COMPND   3 P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3');                                    
COMPND   4 CHAIN: T;                                                            
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*A)-3');              
COMPND   8 CHAIN: P;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MOL_ID: 3;                                                           
COMPND  11 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*G)-3');                            
COMPND  12 CHAIN: D;                                                            
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 MOL_ID: 4;                                                           
COMPND  15 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND  16 CHAIN: A;                                                            
COMPND  17 EC: 2.7.7.7,4.2.99.-;                                                
COMPND  18 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE   4 ORGANISM_TAXID: 32630;                                               
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 SYNTHETIC: YES;                                                      
SOURCE   7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE   8 ORGANISM_TAXID: 32630;                                               
SOURCE   9 MOL_ID: 3;                                                           
SOURCE  10 SYNTHETIC: YES;                                                      
SOURCE  11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  12 ORGANISM_TAXID: 32630;                                               
SOURCE  13 MOL_ID: 4;                                                           
SOURCE  14 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  15 ORGANISM_COMMON: HUMAN;                                              
SOURCE  16 ORGANISM_TAXID: 9606;                                                
SOURCE  17 GENE: POLB;                                                          
SOURCE  18 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  19 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    POLYMERASE, 8-OXOGUANINE, BER, TRANSFERASE, LYASE-DNA COMPLEX         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.J.REED,Z.SUO                                                        
REVDAT   3   22-NOV-17 5VS1    1       REMARK                                   
REVDAT   2   26-JUL-17 5VS1    1       JRNL                                     
REVDAT   1   19-JUL-17 5VS1    0                                                
JRNL        AUTH   A.J.REED,Z.SUO                                               
JRNL        TITL   TIME-DEPENDENT EXTENSION FROM AN 8-OXOGUANINE LESION BY      
JRNL        TITL 2 HUMAN DNA POLYMERASE BETA.                                   
JRNL        REF    J. AM. CHEM. SOC.             V. 139  9684 2017              
JRNL        REFN                   ESSN 1520-5126                               
JRNL        PMID   28682600                                                     
JRNL        DOI    10.1021/JACS.7B05048                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0073                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 52.91                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 13761                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.214                           
REMARK   3   R VALUE            (WORKING SET) : 0.211                           
REMARK   3   FREE R VALUE                     : 0.272                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 725                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.50                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.57                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 997                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 97.40                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3350                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 53                           
REMARK   3   BIN FREE R VALUE                    : 0.4230                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2572                                    
REMARK   3   NUCLEIC ACID ATOMS       : 634                                     
REMARK   3   HETEROGEN ATOMS          : 41                                      
REMARK   3   SOLVENT ATOMS            : 50                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 45.50                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 38.66                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.45000                                              
REMARK   3    B22 (A**2) : 1.68000                                              
REMARK   3    B33 (A**2) : -1.37000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -0.83000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 1.293         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.341         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.255         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.661        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.928                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.858                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3367 ; 0.009 ; 0.018       
REMARK   3   BOND LENGTHS OTHERS               (A):  2881 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4674 ; 1.417 ; 1.807       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  6668 ; 0.912 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   325 ; 5.711 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   121 ;37.517 ;24.050       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   481 ;16.494 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    18 ;14.123 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   483 ; 0.069 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3339 ; 0.006 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   758 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS U VALUES : REFINED INDIVIDUALLY                           
REMARK   4                                                                      
REMARK   4 5VS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-17.                  
REMARK 100 THE DEPOSITION ID IS D_1000227920.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 17-FEB-16                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0-7.5                            
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 31-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97931                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RAYONIX MX300HE                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE, XDS                        
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 27883                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 52.910                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 96.4                               
REMARK 200  DATA REDUNDANCY                : 1.976                              
REMARK 200  R MERGE                    (I) : 0.05200                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.9600                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.60                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 95.3                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.96                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.39100                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.300                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4RPX                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.52                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE PH 7.0-7.5, 350 MM       
REMARK 280  SODIUM ACETATE, 16-18% PEG 3350, VAPOR DIFFUSION, HANGING DROP,     
REMARK 280  TEMPERATURE 293K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       40.25000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19600 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, D, A                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     GLU A     9                                                      
REMARK 465     HIS A   336                                                      
REMARK 465     HIS A   337                                                      
REMARK 465     HIS A   338                                                      
REMARK 465     HIS A   339                                                      
REMARK 465     HIS A   340                                                      
REMARK 465     HIS A   341                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 120    CG   CD   CE   NZ                                   
REMARK 470     LYS A 206    CG   CD   CE   NZ                                   
REMARK 470     GLN A 207    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 244    CG   CD   CE   NZ                                   
REMARK 470     ASP A 246    CG   OD1  OD2                                       
REMARK 470     GLU A 247    CG   CD   OE1  OE2                                  
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 470     THR A 304    OG1  CG2                                            
REMARK 470     VAL A 306    CG1  CG2                                            
REMARK 470     LYS A 326    CG   CD   CE   NZ                                   
REMARK 470     LYS A 331    CG   CD   CE   NZ                                   
REMARK 470     GLU A 335    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.121                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A  12       51.83   -118.40                                   
REMARK 500    ASP A 170      110.75    179.98                                   
REMARK 500    CYS A 178     -136.12   -109.38                                   
REMARK 500    SER A 204      149.70   -170.87                                   
REMARK 500    LYS A 230      116.67   -162.21                                   
REMARK 500    ASP A 246       17.45     54.50                                   
REMARK 500    ASN A 294     -165.64   -126.73                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA P 102  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DC P   9   OP1                                                    
REMARK 620 2  DC P   9   OP2  54.7                                              
REMARK 620 3 THR A 101   O   169.6 124.9                                        
REMARK 620 4 VAL A 103   O    98.0 141.9  86.9                                  
REMARK 620 5 ILE A 106   O   104.4  80.8  85.3  81.7                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA P 101  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DA P  10   O3'                                                    
REMARK 620 2 ASP A 190   OD1 170.2                                              
REMARK 620 3 ASP A 192   OD1  87.1 102.0                                        
REMARK 620 4 ASP A 256   OD2  83.2  92.6  92.1                                  
REMARK 620 5 TTP P 103   O2A  92.3  92.8  81.5 172.3                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA D 101  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DC D   3   OP1                                                    
REMARK 620 2 LYS A  60   O   161.1                                              
REMARK 620 3 LEU A  62   O    95.9  80.4                                        
REMARK 620 4 VAL A  65   O    80.3  81.0  85.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 401  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD2                                                    
REMARK 620 2 ASP A 192   OD2 104.8                                              
REMARK 620 3 TTP P 103   O2A  70.4  78.2                                        
REMARK 620 4 TTP P 103   O3A 104.5 119.5  64.0                                  
REMARK 620 5 TTP P 103   O2G  82.2 169.3 112.1  65.2                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA P 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA P 102                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue TTP P 103                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5VRX   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VRY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VRZ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VS0   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VS2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VS3   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5VS4   RELATED DB: PDB                                   
DBREF  5VS1 T    1    16  PDB    5VS1     5VS1             1     16             
DBREF  5VS1 P    1    10  PDB    5VS1     5VS1             1     10             
DBREF  5VS1 D    1     5  PDB    5VS1     5VS1             1      5             
DBREF  5VS1 A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
SEQADV 5VS1 HIS A  336  UNP  P06746              EXPRESSION TAG                 
SEQADV 5VS1 HIS A  337  UNP  P06746              EXPRESSION TAG                 
SEQADV 5VS1 HIS A  338  UNP  P06746              EXPRESSION TAG                 
SEQADV 5VS1 HIS A  339  UNP  P06746              EXPRESSION TAG                 
SEQADV 5VS1 HIS A  340  UNP  P06746              EXPRESSION TAG                 
SEQADV 5VS1 HIS A  341  UNP  P06746              EXPRESSION TAG                 
SEQRES   1 T   16   DC  DC  DG  DA  DC  DA 8OG  DG  DC  DG  DC  DA  DT          
SEQRES   2 T   16   DC  DA  DG                                                  
SEQRES   1 P   10   DC  DT  DG  DA  DT  DG  DC  DG  DC  DA                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
SEQRES   1 A  341  MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY          
SEQRES   2 A  341  GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU          
SEQRES   3 A  341  LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR          
SEQRES   4 A  341  ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS          
SEQRES   5 A  341  ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL          
SEQRES   6 A  341  GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA          
SEQRES   7 A  341  THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP          
SEQRES   8 A  341  ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER          
SEQRES   9 A  341  GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU          
SEQRES  10 A  341  GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP          
SEQRES  11 A  341  LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE          
SEQRES  12 A  341  GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU          
SEQRES  13 A  341  GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL          
SEQRES  14 A  341  ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG          
SEQRES  15 A  341  ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU          
SEQRES  16 A  341  THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO          
SEQRES  17 A  341  LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL          
SEQRES  18 A  341  HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS          
SEQRES  19 A  341  PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU          
SEQRES  20 A  341  LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE          
SEQRES  21 A  341  PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR          
SEQRES  22 A  341  GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA          
SEQRES  23 A  341  LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG          
SEQRES  24 A  341  PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO          
SEQRES  25 A  341  VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP          
SEQRES  26 A  341  LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HIS HIS HIS          
SEQRES  27 A  341  HIS HIS HIS                                                  
HET    8OG  T   7      23                                                       
HET     CA  P 101       1                                                       
HET     CA  P 102       1                                                       
HET    TTP  P 103      29                                                       
HET     CA  D 101       1                                                       
HET     CA  A 401       1                                                       
HET     CA  A 402       1                                                       
HET    PEG  A 403       7                                                       
HETNAM     8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE                        
HETNAM      CA CALCIUM ION                                                      
HETNAM     TTP THYMIDINE-5'-TRIPHOSPHATE                                        
HETNAM     PEG DI(HYDROXYETHYL)ETHER                                            
HETSYN     8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE            
FORMUL   1  8OG    C10 H14 N5 O8 P                                              
FORMUL   5   CA    5(CA 2+)                                                     
FORMUL   7  TTP    C10 H17 N2 O14 P3                                            
FORMUL  11  PEG    C4 H10 O3                                                    
FORMUL  12  HOH   *50(H2 O)                                                     
HELIX    1 AA1 ASN A   12  VAL A   29  1                                  18    
HELIX    2 AA2 ALA A   32  LYS A   48  1                                  17    
HELIX    3 AA3 SER A   55  LYS A   61  1                                   7    
HELIX    4 AA4 GLY A   66  GLY A   80  1                                  15    
HELIX    5 AA5 LEU A   82  ASP A   91  1                                  10    
HELIX    6 AA6 ASP A   91  THR A  101  1                                  11    
HELIX    7 AA7 GLY A  107  GLU A  117  1                                  11    
HELIX    8 AA8 THR A  121  LYS A  127  1                                   7    
HELIX    9 AA9 ASN A  128  LEU A  132  5                                   5    
HELIX   10 AB1 ASN A  133  TYR A  142  1                                  10    
HELIX   11 AB2 GLY A  144  LYS A  148  5                                   5    
HELIX   12 AB3 ARG A  152  ASP A  170  1                                  19    
HELIX   13 AB4 CYS A  178  ARG A  183  1                                   6    
HELIX   14 AB5 LYS A  209  VAL A  221  1                                  13    
HELIX   15 AB6 PRO A  261  ASP A  263  5                                   3    
HELIX   16 AB7 GLN A  264  GLY A  274  1                                  11    
HELIX   17 AB8 SER A  275  LYS A  289  1                                  15    
HELIX   18 AB9 SER A  315  ILE A  323  1                                   9    
HELIX   19 AC1 GLU A  329  SER A  334  5                                   6    
SHEET    1 AA1 2 ILE A 150  PRO A 151  0                                        
SHEET    2 AA1 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1 AA2 5 ILE A 174  VAL A 177  0                                        
SHEET    2 AA2 5 MET A 191  THR A 196 -1  O  THR A 196   N  ILE A 174           
SHEET    3 AA2 5 ARG A 253  LEU A 259  1  O  ASP A 256   N  VAL A 193           
SHEET    4 AA2 5 LYS A 234  CYS A 239 -1  N  PHE A 235   O  ILE A 257           
SHEET    5 AA2 5 ILE A 224  LYS A 230 -1  N  SER A 229   O  MET A 236           
SHEET    1 AA3 2 PHE A 200  THR A 201  0                                        
SHEET    2 AA3 2 SER A 204  THR A 205 -1  O  SER A 204   N  THR A 201           
SHEET    1 AA4 2 PHE A 291  ILE A 293  0                                        
SHEET    2 AA4 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O3'  DA T   6                 P   8OG T   7     1555   1555  1.56  
LINK         O3' 8OG T   7                 P    DG T   8     1555   1555  1.62  
LINK         OP1  DC P   9                CA    CA P 102     1555   1555  2.25  
LINK         OP2  DC P   9                CA    CA P 102     1555   1555  3.11  
LINK         O3'  DA P  10                CA    CA P 101     1555   1555  2.33  
LINK         OP1  DC D   3                CA    CA D 101     1555   1555  2.34  
LINK         O   LYS A  60                CA    CA D 101     1555   1555  2.44  
LINK         O   LEU A  62                CA    CA D 101     1555   1555  2.50  
LINK         O   VAL A  65                CA    CA D 101     1555   1555  2.64  
LINK         O   THR A 101                CA    CA P 102     1555   1555  2.45  
LINK         O   VAL A 103                CA    CA P 102     1555   1555  2.53  
LINK         O   ILE A 106                CA    CA P 102     1555   1555  2.91  
LINK         OD1 ASP A 190                CA    CA P 101     1555   1555  2.35  
LINK         OD2 ASP A 190                CA    CA A 401     1555   1555  2.27  
LINK         OD1 ASP A 192                CA    CA P 101     1555   1555  2.47  
LINK         OD2 ASP A 192                CA    CA A 401     1555   1555  2.18  
LINK         OE2 GLU A 249                CA    CA A 402     1555   1555  2.86  
LINK         OD2 ASP A 256                CA    CA P 101     1555   1555  2.50  
LINK        CA    CA P 101                 O2A TTP P 103     1555   1555  2.11  
LINK         O2A TTP P 103                CA    CA A 401     1555   1555  2.44  
LINK         O3A TTP P 103                CA    CA A 401     1555   1555  2.29  
LINK         O2G TTP P 103                CA    CA A 401     1555   1555  3.13  
CISPEP   1 GLY A  274    SER A  275          0         0.76                     
SITE     1 AC1  5 ASP A 190  ASP A 192  ASP A 256   DA P  10                    
SITE     2 AC1  5 TTP P 103                                                     
SITE     1 AC2  4 THR A 101  VAL A 103  ILE A 106   DC P   9                    
SITE     1 AC3 17 ARG A 149  SER A 180  ARG A 183  GLY A 189                    
SITE     2 AC3 17 ASP A 190  ASP A 192  TYR A 271  PHE A 272                    
SITE     3 AC3 17 THR A 273  GLY A 274  ASP A 276  ASN A 279                    
SITE     4 AC3 17  CA A 401   DA P  10   CA P 101  HOH P 202                    
SITE     5 AC3 17  DA T   6                                                     
SITE     1 AC4  4 LYS A  60  LEU A  62  VAL A  65   DC D   3                    
SITE     1 AC5  3 ASP A 190  ASP A 192  TTP P 103                               
SITE     1 AC6  1 GLU A 249                                                     
SITE     1 AC7  5 ILE A 174  THR A 176  THR A 196  TYR A 265                    
SITE     2 AC7  5 TYR A 266                                                     
CRYST1   50.600   80.500   55.300  90.00 106.90  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019763  0.000000  0.006004        0.00000                         
SCALE2      0.000000  0.012422  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018899        0.00000