PDB Short entry for 5VYK HEADER SIGNALING PROTEIN 25-MAY-17 5VYK TITLE CRYSTAL STRUCTURE OF THE BRS DOMAIN OF BRAF IN COMPLEX WITH THE CC-SAM TITLE 2 DOMAIN OF KSR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA PROTEIN OF BRS DOMAIN OF BRAF AND CC-SAM DOMAIN OF COMPND 3 KSR1,SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 4 CHAIN: A, C; COMPND 5 FRAGMENT: UNP Q8IVT5 RESIDUES 27-172, UNP F7FV05 RESIDUES 39-108; COMPND 6 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 7 HOMOLOG B1; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KSR1, KSR, BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRAF, KSR1, BRS, CC-SAM, COMPLEX, KINASE, PSEUDOKINASE, SIGNALING., KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MAISONNEUVE,I.KURINOV,S.A.MARULLO,H.LAVOIE,N.THEVAKUMARAN,M.SAHMI, AUTHOR 2 T.JIN,M.THERRIEN,F.SICHERI REVDAT 4 13-MAR-24 5VYK 1 REMARK REVDAT 3 07-MAR-18 5VYK 1 JRNL REVDAT 2 28-FEB-18 5VYK 1 JRNL REVDAT 1 14-FEB-18 5VYK 0 JRNL AUTH H.LAVOIE,M.SAHMI,P.MAISONNEUVE,S.A.MARULLO,N.THEVAKUMARAN, JRNL AUTH 2 T.JIN,I.KURINOV,F.SICHERI,M.THERRIEN JRNL TITL MEK DRIVES BRAF ACTIVATION THROUGH ALLOSTERIC CONTROL OF KSR JRNL TITL 2 PROTEINS. JRNL REF NATURE V. 554 549 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29433126 JRNL DOI 10.1038/NATURE25478 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 47163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6613 - 4.5837 0.97 2573 146 0.2076 0.2213 REMARK 3 2 4.5837 - 3.6385 0.98 2528 140 0.1682 0.1644 REMARK 3 3 3.6385 - 3.1787 0.98 2523 149 0.2021 0.2372 REMARK 3 4 3.1787 - 2.8881 0.99 2534 133 0.2191 0.2329 REMARK 3 5 2.8881 - 2.6811 0.99 2539 139 0.2351 0.3263 REMARK 3 6 2.6811 - 2.5230 0.99 2554 140 0.2310 0.2767 REMARK 3 7 2.5230 - 2.3967 0.98 2503 148 0.2289 0.2546 REMARK 3 8 2.3967 - 2.2924 0.99 2485 133 0.2191 0.2214 REMARK 3 9 2.2924 - 2.2041 0.99 2503 163 0.2131 0.2279 REMARK 3 10 2.2041 - 2.1280 0.98 2513 125 0.2183 0.2965 REMARK 3 11 2.1280 - 2.0615 0.98 2515 140 0.2357 0.2677 REMARK 3 12 2.0615 - 2.0026 0.97 2436 161 0.2910 0.3305 REMARK 3 13 2.0026 - 1.9499 0.97 2472 147 0.3363 0.3620 REMARK 3 14 1.9499 - 1.9023 0.97 2520 126 0.3428 0.3444 REMARK 3 15 1.9023 - 1.8590 0.97 2444 143 0.3826 0.4179 REMARK 3 16 1.8590 - 1.8195 0.96 2471 132 0.4300 0.4816 REMARK 3 17 1.8195 - 1.7831 0.94 2361 134 0.4918 0.5608 REMARK 3 18 1.7831 - 1.7494 0.86 2172 118 0.5311 0.5881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3114 REMARK 3 ANGLE : 0.750 4226 REMARK 3 CHIRALITY : 0.044 502 REMARK 3 PLANARITY : 0.005 546 REMARK 3 DIHEDRAL : 17.365 1918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 33:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.952 30.624 7.637 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.4636 REMARK 3 T33: 0.2990 T12: -0.0296 REMARK 3 T13: -0.0339 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 4.1700 L22: 5.7495 REMARK 3 L33: 7.0748 L12: 0.0625 REMARK 3 L13: 0.3373 L23: -1.8864 REMARK 3 S TENSOR REMARK 3 S11: 0.2984 S12: -0.4745 S13: -0.3433 REMARK 3 S21: 0.2070 S22: -0.2008 S23: -0.1738 REMARK 3 S31: 0.3688 S32: -0.1483 S33: 0.0340 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 94:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.493 18.312 28.560 REMARK 3 T TENSOR REMARK 3 T11: 1.4733 T22: 1.3750 REMARK 3 T33: 0.6256 T12: -0.3138 REMARK 3 T13: -0.5254 T23: 1.5483 REMARK 3 L TENSOR REMARK 3 L11: 0.7210 L22: 2.5870 REMARK 3 L33: 3.0084 L12: -0.4351 REMARK 3 L13: -0.4803 L23: 2.7894 REMARK 3 S TENSOR REMARK 3 S11: -0.2439 S12: -0.3326 S13: -0.3435 REMARK 3 S21: 0.7910 S22: -0.0064 S23: 0.0100 REMARK 3 S31: 1.1568 S32: 0.2460 S33: -1.1666 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.802 24.318 10.792 REMARK 3 T TENSOR REMARK 3 T11: 0.5197 T22: 0.6407 REMARK 3 T33: 0.6959 T12: 0.1942 REMARK 3 T13: -0.2492 T23: 0.2895 REMARK 3 L TENSOR REMARK 3 L11: 5.0641 L22: 5.4918 REMARK 3 L33: 7.3239 L12: 0.6100 REMARK 3 L13: 2.1398 L23: -1.5947 REMARK 3 S TENSOR REMARK 3 S11: 0.7250 S12: -0.1219 S13: -1.7398 REMARK 3 S21: 0.0496 S22: 0.4051 S23: -0.0992 REMARK 3 S31: 1.9579 S32: 0.7787 S33: 1.5024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 125:153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.018 27.814 16.262 REMARK 3 T TENSOR REMARK 3 T11: 0.5610 T22: 1.4583 REMARK 3 T33: 0.7631 T12: -0.0182 REMARK 3 T13: -0.1801 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 8.0808 L22: 3.3715 REMARK 3 L33: 2.0226 L12: -1.1557 REMARK 3 L13: 1.6388 L23: -0.8233 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.5479 S13: -0.3398 REMARK 3 S21: 0.1965 S22: 0.0625 S23: -1.1038 REMARK 3 S31: 1.7798 S32: 0.9943 S33: -0.4564 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 154:171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.273 36.596 13.983 REMARK 3 T TENSOR REMARK 3 T11: 0.6902 T22: 1.0054 REMARK 3 T33: 1.2448 T12: -0.0480 REMARK 3 T13: -0.2858 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 6.3362 L22: 4.8506 REMARK 3 L33: 4.7815 L12: -1.5891 REMARK 3 L13: 5.4177 L23: -1.4044 REMARK 3 S TENSOR REMARK 3 S11: -0.7653 S12: -0.2414 S13: 2.3044 REMARK 3 S21: 0.1962 S22: 0.1985 S23: -0.1702 REMARK 3 S31: -1.0064 S32: 1.0828 S33: 0.3804 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 1042:1068 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.750 32.973 -7.654 REMARK 3 T TENSOR REMARK 3 T11: 0.6825 T22: 0.5236 REMARK 3 T33: 0.2933 T12: -0.0402 REMARK 3 T13: 0.0373 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 7.5418 L22: 3.9253 REMARK 3 L33: 9.9461 L12: 4.0812 REMARK 3 L13: -6.2847 L23: -4.4126 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.5758 S13: -0.1251 REMARK 3 S21: -1.0004 S22: 0.0594 S23: -0.2994 REMARK 3 S31: 0.3633 S32: -0.1347 S33: -0.1258 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 1069:1105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.673 37.335 -3.043 REMARK 3 T TENSOR REMARK 3 T11: 0.4900 T22: 0.5022 REMARK 3 T33: 0.2776 T12: -0.0523 REMARK 3 T13: 0.0585 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 7.4423 L22: 4.4320 REMARK 3 L33: 8.0289 L12: 2.7343 REMARK 3 L13: -5.0676 L23: -1.5447 REMARK 3 S TENSOR REMARK 3 S11: 0.4006 S12: 0.1717 S13: 0.2826 REMARK 3 S21: -0.5187 S22: 0.1596 S23: 0.0279 REMARK 3 S31: -0.1207 S32: -0.8509 S33: -0.4714 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 33:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.037 54.542 1.415 REMARK 3 T TENSOR REMARK 3 T11: 0.3011 T22: 0.4855 REMARK 3 T33: 0.4453 T12: -0.0245 REMARK 3 T13: 0.0500 T23: 0.1577 REMARK 3 L TENSOR REMARK 3 L11: 5.3215 L22: 5.6764 REMARK 3 L33: 7.4600 L12: 1.3219 REMARK 3 L13: -1.4599 L23: -1.6327 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: 0.5713 S13: 0.8624 REMARK 3 S21: -0.2281 S22: -0.2516 S23: -0.4364 REMARK 3 S31: -0.6393 S32: 0.3671 S33: -0.1048 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN C AND RESID 109:171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.825 52.576 7.496 REMARK 3 T TENSOR REMARK 3 T11: 0.4218 T22: 1.0199 REMARK 3 T33: 0.8094 T12: -0.1084 REMARK 3 T13: -0.0728 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 3.2476 L22: 2.4377 REMARK 3 L33: 7.4627 L12: 0.6805 REMARK 3 L13: -2.3896 L23: 1.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.4826 S12: -0.7523 S13: -0.1369 REMARK 3 S21: 0.1966 S22: -0.2767 S23: -0.5098 REMARK 3 S31: 0.1186 S32: 1.0088 S33: -0.3639 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 1042:1068 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.388 50.032 13.295 REMARK 3 T TENSOR REMARK 3 T11: 0.5853 T22: 0.5051 REMARK 3 T33: 0.3420 T12: 0.0361 REMARK 3 T13: 0.1741 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 4.1136 L22: 7.3826 REMARK 3 L33: 3.5012 L12: 0.5744 REMARK 3 L13: -2.2566 L23: -3.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.0623 S12: -0.3177 S13: 0.3144 REMARK 3 S21: 1.3988 S22: 0.0276 S23: 0.3148 REMARK 3 S31: -0.7810 S32: -0.2952 S33: -0.3780 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 1069:1075 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.535 58.364 -9.522 REMARK 3 T TENSOR REMARK 3 T11: 0.7402 T22: 1.0644 REMARK 3 T33: 0.6654 T12: 0.1361 REMARK 3 T13: 0.1512 T23: 0.3273 REMARK 3 L TENSOR REMARK 3 L11: 1.6050 L22: 1.3092 REMARK 3 L33: 7.8358 L12: 1.4437 REMARK 3 L13: -3.5317 L23: -3.1949 REMARK 3 S TENSOR REMARK 3 S11: 0.3049 S12: 2.0555 S13: 1.0249 REMARK 3 S21: -0.3074 S22: -1.1541 S23: -1.1032 REMARK 3 S31: -1.7856 S32: 0.7499 S33: 0.3402 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN A AND RESID 1076:1104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.625 43.156 8.968 REMARK 3 T TENSOR REMARK 3 T11: 0.5864 T22: 0.5455 REMARK 3 T33: 0.2741 T12: 0.0014 REMARK 3 T13: 0.0585 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 6.4202 L22: 4.6765 REMARK 3 L33: 2.9666 L12: 0.7770 REMARK 3 L13: -2.0102 L23: -1.5752 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: 0.0568 S13: 0.0774 REMARK 3 S21: 0.5254 S22: 0.0464 S23: 0.3154 REMARK 3 S31: 0.6681 S32: -0.5262 S33: -0.1897 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 56 THROUGH 161 OR REMARK 3 (RESID 162 THROUGH 163 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 164 THROUGH 171)) REMARK 3 SELECTION : (CHAIN C AND ((RESID 56 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 57 THROUGH 161 OR (RESID 162 REMARK 3 THROUGH 163 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 164 THROUGH 171)) REMARK 3 ATOM PAIRS NUMBER : 1040 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.749 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7.5, 3.0M SODIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.89800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.16800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.89800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.16800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 SER A 1036 REMARK 465 SER A 1037 REMARK 465 ALA A 1038 REMARK 465 ALA A 1039 REMARK 465 ASP A 1040 REMARK 465 PRO A 1041 REMARK 465 ASN A 1105 REMARK 465 GLY A 1106 REMARK 465 THR A 1107 REMARK 465 ASP A 1108 REMARK 465 PHE A 1109 REMARK 465 SER A 1110 REMARK 465 GLY C 24 REMARK 465 ALA C 25 REMARK 465 MET C 26 REMARK 465 GLU C 27 REMARK 465 GLY C 28 REMARK 465 GLY C 29 REMARK 465 ALA C 30 REMARK 465 GLY C 31 REMARK 465 ALA C 32 REMARK 465 GLY C 172 REMARK 465 GLY C 173 REMARK 465 SER C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 GLY C 177 REMARK 465 SER C 178 REMARK 465 GLY C 179 REMARK 465 SER C 180 REMARK 465 SER C 1036 REMARK 465 SER C 1037 REMARK 465 ALA C 1038 REMARK 465 ALA C 1039 REMARK 465 ASP C 1040 REMARK 465 PRO C 1041 REMARK 465 GLY C 1106 REMARK 465 THR C 1107 REMARK 465 ASP C 1108 REMARK 465 PHE C 1109 REMARK 465 SER C 1110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ILE A 126 CG1 CG2 CD1 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ILE A1043 CG1 CG2 CD1 REMARK 470 GLU A1045 CG CD OE1 OE2 REMARK 470 LYS A1055 CG CD CE NZ REMARK 470 GLU A1101 CG CD OE1 OE2 REMARK 470 ARG C 36 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 TYR C 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 119 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 121 CG CD OE1 OE2 REMARK 470 GLN C 124 CG CD OE1 NE2 REMARK 470 GLU C 125 CG CD OE1 OE2 REMARK 470 ILE C 126 CG1 CG2 CD1 REMARK 470 ARG C 128 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 129 CG OD1 OD2 REMARK 470 GLU C 140 CG CD OE1 OE2 REMARK 470 LYS C 144 CG CD CE NZ REMARK 470 GLU C 145 CG CD OE1 OE2 REMARK 470 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 155 CG OD1 OD2 REMARK 470 GLN C 161 CG CD OE1 NE2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 GLU C1045 CG CD OE1 OE2 REMARK 470 LYS C1055 CG CD CE NZ REMARK 470 GLN C1097 CG CD OE1 NE2 REMARK 470 GLU C1101 CG CD OE1 OE2 REMARK 470 SER C1102 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 1078 O HOH C 401 2.07 REMARK 500 OH TYR A 1078 O HOH A 401 2.11 REMARK 500 O HOH C 437 O HOH C 439 2.14 REMARK 500 O3 GOL C 301 O HOH C 402 2.16 REMARK 500 O HOH A 416 O HOH A 441 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH C 406 4555 1.91 REMARK 500 O HOH A 407 O HOH C 401 4555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 DBREF 5VYK A 27 172 UNP Q8IVT5 KSR1_HUMAN 27 172 DBREF 5VYK A 1036 1110 UNP P15056 BRAF_HUMAN 36 110 DBREF 5VYK C 27 172 UNP Q8IVT5 KSR1_HUMAN 27 172 DBREF 5VYK C 1036 1110 UNP P15056 BRAF_HUMAN 36 110 SEQADV 5VYK GLY A 24 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK ALA A 25 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK MET A 26 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK GLY A 173 UNP Q8IVT5 LINKER SEQADV 5VYK SER A 174 UNP Q8IVT5 LINKER SEQADV 5VYK GLY A 175 UNP Q8IVT5 LINKER SEQADV 5VYK SER A 176 UNP Q8IVT5 LINKER SEQADV 5VYK GLY A 177 UNP Q8IVT5 LINKER SEQADV 5VYK SER A 178 UNP Q8IVT5 LINKER SEQADV 5VYK GLY A 179 UNP Q8IVT5 LINKER SEQADV 5VYK SER A 180 UNP Q8IVT5 LINKER SEQADV 5VYK GLY C 24 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK ALA C 25 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK MET C 26 UNP Q8IVT5 EXPRESSION TAG SEQADV 5VYK GLY C 173 UNP Q8IVT5 LINKER SEQADV 5VYK SER C 174 UNP Q8IVT5 LINKER SEQADV 5VYK GLY C 175 UNP Q8IVT5 LINKER SEQADV 5VYK SER C 176 UNP Q8IVT5 LINKER SEQADV 5VYK GLY C 177 UNP Q8IVT5 LINKER SEQADV 5VYK SER C 178 UNP Q8IVT5 LINKER SEQADV 5VYK GLY C 179 UNP Q8IVT5 LINKER SEQADV 5VYK SER C 180 UNP Q8IVT5 LINKER SEQRES 1 A 232 GLY ALA MET GLU GLY GLY ALA GLY ALA ALA ALA SER ARG SEQRES 2 A 232 ALA LEU GLN GLN CYS GLY GLN LEU GLN LYS LEU ILE ASP SEQRES 3 A 232 ILE SER ILE GLY SER LEU ARG GLY LEU ARG THR LYS CYS SEQRES 4 A 232 ALA VAL SER ASN ASP LEU THR GLN GLN GLU ILE ARG THR SEQRES 5 A 232 LEU GLU ALA LYS LEU VAL ARG TYR ILE CYS LYS GLN ARG SEQRES 6 A 232 GLN CYS LYS LEU SER VAL ALA PRO GLY GLU ARG THR PRO SEQRES 7 A 232 GLU LEU ASN SER TYR PRO ARG PHE SER ASP TRP LEU TYR SEQRES 8 A 232 THR PHE ASN VAL ARG PRO GLU VAL VAL GLN GLU ILE PRO SEQRES 9 A 232 ARG ASP LEU THR LEU ASP ALA LEU LEU GLU MET ASN GLU SEQRES 10 A 232 ALA LYS VAL LYS GLU THR LEU ARG ARG CYS GLY ALA SER SEQRES 11 A 232 GLY ASP GLU CYS GLY ARG LEU GLN TYR ALA LEU THR CYS SEQRES 12 A 232 LEU ARG LYS VAL THR GLY GLY SER GLY SER GLY SER GLY SEQRES 13 A 232 SER SER SER ALA ALA ASP PRO ALA ILE PRO GLU GLU VAL SEQRES 14 A 232 TRP ASN ILE LYS GLN MET ILE LYS LEU THR GLN GLU HIS SEQRES 15 A 232 ILE GLU ALA LEU LEU ASP LYS PHE GLY GLY GLU HIS ASN SEQRES 16 A 232 PRO PRO SER ILE TYR LEU GLU ALA TYR GLU GLU TYR THR SEQRES 17 A 232 SER LYS LEU ASP ALA LEU GLN GLN ARG GLU GLN GLN LEU SEQRES 18 A 232 LEU GLU SER LEU GLY ASN GLY THR ASP PHE SER SEQRES 1 C 232 GLY ALA MET GLU GLY GLY ALA GLY ALA ALA ALA SER ARG SEQRES 2 C 232 ALA LEU GLN GLN CYS GLY GLN LEU GLN LYS LEU ILE ASP SEQRES 3 C 232 ILE SER ILE GLY SER LEU ARG GLY LEU ARG THR LYS CYS SEQRES 4 C 232 ALA VAL SER ASN ASP LEU THR GLN GLN GLU ILE ARG THR SEQRES 5 C 232 LEU GLU ALA LYS LEU VAL ARG TYR ILE CYS LYS GLN ARG SEQRES 6 C 232 GLN CYS LYS LEU SER VAL ALA PRO GLY GLU ARG THR PRO SEQRES 7 C 232 GLU LEU ASN SER TYR PRO ARG PHE SER ASP TRP LEU TYR SEQRES 8 C 232 THR PHE ASN VAL ARG PRO GLU VAL VAL GLN GLU ILE PRO SEQRES 9 C 232 ARG ASP LEU THR LEU ASP ALA LEU LEU GLU MET ASN GLU SEQRES 10 C 232 ALA LYS VAL LYS GLU THR LEU ARG ARG CYS GLY ALA SER SEQRES 11 C 232 GLY ASP GLU CYS GLY ARG LEU GLN TYR ALA LEU THR CYS SEQRES 12 C 232 LEU ARG LYS VAL THR GLY GLY SER GLY SER GLY SER GLY SEQRES 13 C 232 SER SER SER ALA ALA ASP PRO ALA ILE PRO GLU GLU VAL SEQRES 14 C 232 TRP ASN ILE LYS GLN MET ILE LYS LEU THR GLN GLU HIS SEQRES 15 C 232 ILE GLU ALA LEU LEU ASP LYS PHE GLY GLY GLU HIS ASN SEQRES 16 C 232 PRO PRO SER ILE TYR LEU GLU ALA TYR GLU GLU TYR THR SEQRES 17 C 232 SER LYS LEU ASP ALA LEU GLN GLN ARG GLU GLN GLN LEU SEQRES 18 C 232 LEU GLU SER LEU GLY ASN GLY THR ASP PHE SER HET GOL A 301 6 HET GOL C 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *99(H2 O) HELIX 1 AA1 ALA A 33 CYS A 62 1 30 HELIX 2 AA2 ASN A 66 VAL A 94 1 29 HELIX 3 AA3 THR A 100 SER A 105 1 6 HELIX 4 AA4 ARG A 108 PHE A 116 1 9 HELIX 5 AA5 ARG A 119 GLU A 125 1 7 HELIX 6 AA6 THR A 131 MET A 138 1 8 HELIX 7 AA7 ASN A 139 CYS A 150 1 12 HELIX 8 AA8 SER A 153 THR A 171 1 19 HELIX 9 AA9 ILE A 1043 GLY A 1069 1 27 HELIX 10 AB1 PRO A 1075 GLY A 1104 1 30 HELIX 11 AB2 ALA C 34 CYS C 62 1 29 HELIX 12 AB3 ASN C 66 VAL C 94 1 29 HELIX 13 AB4 THR C 100 SER C 105 1 6 HELIX 14 AB5 ARG C 108 PHE C 116 1 9 HELIX 15 AB6 ARG C 119 GLU C 125 1 7 HELIX 16 AB7 THR C 131 MET C 138 1 8 HELIX 17 AB8 ASN C 139 CYS C 150 1 12 HELIX 18 AB9 SER C 153 THR C 171 1 19 HELIX 19 AC1 ILE C 1043 GLY C 1069 1 27 HELIX 20 AC2 PRO C 1075 ASN C 1105 1 31 CISPEP 1 TYR A 106 PRO A 107 0 -3.16 CISPEP 2 TYR C 106 PRO C 107 0 -3.28 SITE 1 AC1 7 MET A1053 LEU A1056 THR A1057 TYR A1085 SITE 2 AC1 7 LYS A1088 HOH A 403 LEU C 76 SITE 1 AC2 8 SER A 54 GLU A 72 LEU A 76 LEU C1056 SITE 2 AC2 8 THR C1057 TYR C1085 LYS C1088 HOH C 402 CRYST1 179.796 54.336 51.864 90.00 106.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005562 0.000000 0.001667 0.00000 SCALE2 0.000000 0.018404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020128 0.00000