PDB Short entry for 5W43 HEADER DNA BINDING PROTEIN 09-JUN-17 5W43 TITLE STRUCTURE OF THE TWO-COMPONENT RESPONSE REGULATOR RCSB-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN RCSB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAPSULAR SYNTHESIS REGULATOR COMPONENT B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*GP*AP*TP*TP*TP*AP*GP*GP*AP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*AP*TP*A)- COMPND 9 3'); COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*AP*TP*CP*TP*AP*AP*GP*AP*TP*TP*TP*TP*TP*CP*CP*TP*AP*AP*AP*TP*C)- COMPND 15 3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: K-12 SUBSTR. MG1655; SOURCE 5 GENE: RCSB, B2217, JW2205; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCA24N; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562 KEYWDS RCS PHOSPHORELAY, RESPONSE REGULATOR, FIXJ/NARL, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, TWO-COMPONENT KEYWDS 3 SIGNAL TRANSDUCTION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,Z.WARWZAK,S.PSHENYCHNYI,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 14-MAR-18 5W43 1 JRNL REVDAT 1 07-MAR-18 5W43 0 JRNL AUTH E.V.FILIPPOVA,B.ZEMAITAITIS,T.AUNG,A.J.WOLFE,W.F.ANDERSON JRNL TITL STRUCTURAL BASIS FOR DNA RECOGNITION BY THE TWO-COMPONENT JRNL TITL 2 RESPONSE REGULATOR RCSB. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 29487239 JRNL DOI 10.1128/MBIO.01993-17 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 765 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3074 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.484 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.468 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4116 ; 0.015 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5748 ; 2.019 ; 1.780 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 7.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;47.421 ;25.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 611 ;24.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2651 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 3.471 ; 4.120 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 5.647 ; 6.166 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2537 ; 4.262 ; 4.894 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16950 ;11.955 ;82.472 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 141 B 2 141 7702 0.13 0.05 REMARK 3 2 A 149 206 B 149 206 3464 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 65.7575 -23.8350 26.1791 REMARK 3 T TENSOR REMARK 3 T11: 0.7177 T22: 0.4781 REMARK 3 T33: 0.4550 T12: 0.0119 REMARK 3 T13: 0.0134 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 5.5186 L22: 6.1129 REMARK 3 L33: 5.8229 L12: -0.9945 REMARK 3 L13: -3.0401 L23: -0.9061 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.2460 S13: 0.1472 REMARK 3 S21: -0.4522 S22: 0.1931 S23: 0.1251 REMARK 3 S31: 0.3484 S32: 0.0999 S33: -0.2595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3687 -19.5251 21.1714 REMARK 3 T TENSOR REMARK 3 T11: 0.6474 T22: 0.6358 REMARK 3 T33: 0.6415 T12: -0.0394 REMARK 3 T13: 0.0769 T23: 0.1105 REMARK 3 L TENSOR REMARK 3 L11: 8.4820 L22: 2.9336 REMARK 3 L33: 4.5120 L12: 2.2038 REMARK 3 L13: 1.4071 L23: -0.8129 REMARK 3 S TENSOR REMARK 3 S11: -0.2027 S12: 0.1736 S13: -0.4943 REMARK 3 S21: 0.1977 S22: 0.2382 S23: 0.0528 REMARK 3 S31: 0.5221 S32: -0.3713 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2214 1.5996 16.6341 REMARK 3 T TENSOR REMARK 3 T11: 0.9591 T22: 0.6891 REMARK 3 T33: 0.8298 T12: 0.0546 REMARK 3 T13: 0.3313 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 5.5540 L22: 4.3529 REMARK 3 L33: 5.4233 L12: 0.4184 REMARK 3 L13: 0.6342 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.4623 S12: 0.6479 S13: 0.7747 REMARK 3 S21: -0.1552 S22: 0.1039 S23: -0.8424 REMARK 3 S31: -0.3418 S32: 0.2857 S33: -0.5662 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 149 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0014 -1.6141 12.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.9776 T22: 0.9951 REMARK 3 T33: 0.8412 T12: 0.1180 REMARK 3 T13: 0.0676 T23: 0.2277 REMARK 3 L TENSOR REMARK 3 L11: 6.3567 L22: 7.2942 REMARK 3 L33: 1.4631 L12: -0.8657 REMARK 3 L13: -1.5118 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.2621 S12: 0.8516 S13: 0.4209 REMARK 3 S21: -0.4686 S22: 0.2254 S23: 0.4912 REMARK 3 S31: -0.0617 S32: -0.2393 S33: -0.4874 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 22 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4032 -2.5167 19.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.9558 T22: 0.9620 REMARK 3 T33: 1.0874 T12: 0.0660 REMARK 3 T13: 0.1063 T23: 0.4082 REMARK 3 L TENSOR REMARK 3 L11: 3.4890 L22: 4.4218 REMARK 3 L33: 3.6610 L12: 3.3128 REMARK 3 L13: -2.0657 L23: -1.9585 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: 0.6821 S13: 0.4409 REMARK 3 S21: 0.1727 S22: 0.4248 S23: 0.7894 REMARK 3 S31: -0.1570 S32: -0.4703 S33: -0.5650 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 23 F 44 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0461 -2.8445 19.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.6892 T22: 0.7984 REMARK 3 T33: 1.4599 T12: 0.2386 REMARK 3 T13: 0.5723 T23: 0.9420 REMARK 3 L TENSOR REMARK 3 L11: 1.1438 L22: 0.3468 REMARK 3 L33: 0.7694 L12: 0.4660 REMARK 3 L13: 0.8551 L23: 0.4602 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: 0.4792 S13: 0.2580 REMARK 3 S21: 0.1873 S22: 0.0423 S23: 0.2816 REMARK 3 S31: 0.1507 S32: 0.2182 S33: -0.1081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5W43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11611 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 5I4C & 1JE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M AMMONUIM REMARK 280 ACETATE, 25% PEG3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.28767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.57533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.43150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.71917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.14383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 142 REMARK 465 ALA A 143 REMARK 465 GLY A 144 REMARK 465 GLY A 145 REMARK 465 TYR A 146 REMARK 465 GLY A 147 REMARK 465 LEU A 210 REMARK 465 SER A 211 REMARK 465 PRO A 212 REMARK 465 ALA A 213 REMARK 465 ASP A 214 REMARK 465 LYS A 215 REMARK 465 ASP A 216 REMARK 465 MET B 1 REMARK 465 GLY B 126 REMARK 465 LYS B 127 REMARK 465 LYS B 128 REMARK 465 PHE B 129 REMARK 465 THR B 130 REMARK 465 SER B 142 REMARK 465 ALA B 143 REMARK 465 GLY B 144 REMARK 465 GLY B 145 REMARK 465 TYR B 146 REMARK 465 GLY B 147 REMARK 465 ASP B 148 REMARK 465 VAL B 208 REMARK 465 THR B 209 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 PRO B 212 REMARK 465 ALA B 213 REMARK 465 ASP B 214 REMARK 465 LYS B 215 REMARK 465 ASP B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 75 OE2 GLU B 104 2.18 REMARK 500 N2 DG E 7 O2 DC F 38 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 205 CB LEU A 205 CG -0.239 REMARK 500 ASN B 90 CB ASN B 90 CG 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 108 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 LEU B 137 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 DA F 24 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 -39.60 -39.49 REMARK 500 ALA A 112 40.79 -156.28 REMARK 500 ASN B 90 45.48 -81.87 REMARK 500 ALA B 112 51.90 -172.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP91817 RELATED DB: TARGETTRACK DBREF 5W43 A 1 216 UNP P0DMC7 RCSB_ECOLI 1 216 DBREF 5W43 B 1 216 UNP P0DMC7 RCSB_ECOLI 1 216 DBREF 5W43 E 1 22 PDB 5W43 5W43 1 22 DBREF 5W43 F 23 44 PDB 5W43 5W43 23 44 SEQRES 1 A 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 A 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 A 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 A 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 A 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 A 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 A 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 A 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 A 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 A 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 A 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 A 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 A 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 A 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 A 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 A 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 A 216 THR LEU SER PRO ALA ASP LYS ASP SEQRES 1 B 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 B 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 B 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 B 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 B 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 B 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 B 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 B 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 B 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 B 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 B 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 B 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 B 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 B 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 B 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 B 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 B 216 THR LEU SER PRO ALA ASP LYS ASP SEQRES 1 E 22 DG DA DT DT DT DA DG DG DA DA DA DA DA SEQRES 2 E 22 DT DC DT DT DA DG DA DT DA SEQRES 1 F 22 DT DA DT DC DT DA DA DG DA DT DT DT DT SEQRES 2 F 22 DT DC DC DT DA DA DA DT DC HELIX 1 AA1 HIS A 12 GLU A 24 1 13 HELIX 2 AA2 ASP A 37 LEU A 45 1 9 HELIX 3 AA3 PRO A 46 LEU A 48 5 3 HELIX 4 AA4 ASP A 66 PHE A 78 1 13 HELIX 5 AA5 ASN A 91 ASP A 100 1 10 HELIX 6 AA6 THR A 114 GLY A 126 1 13 HELIX 7 AA7 PRO A 131 GLU A 139 1 9 HELIX 8 AA8 SER A 152 ALA A 163 1 12 HELIX 9 AA9 LEU A 167 LEU A 175 1 9 HELIX 10 AB1 SER A 178 LEU A 193 1 16 HELIX 11 AB2 ASN A 197 VAL A 208 1 12 HELIX 12 AB3 HIS B 12 GLU B 24 1 13 HELIX 13 AB4 ASP B 37 LEU B 45 1 9 HELIX 14 AB5 ASP B 66 PHE B 78 1 13 HELIX 15 AB6 ASN B 91 ASP B 100 1 10 HELIX 16 AB7 THR B 114 ALA B 122 1 9 HELIX 17 AB8 GLU B 132 LEU B 137 1 6 HELIX 18 AB9 SER B 152 GLU B 164 1 13 HELIX 19 AC1 LEU B 167 LEU B 175 1 9 HELIX 20 AC2 SER B 178 GLY B 194 1 17 HELIX 21 AC3 ASN B 197 SER B 206 1 10 SHEET 1 AA1 5 VAL A 29 PHE A 35 0 SHEET 2 AA1 5 MET A 4 ALA A 9 1 N VAL A 6 O ASN A 30 SHEET 3 AA1 5 VAL A 52 THR A 55 1 O ILE A 54 N ALA A 9 SHEET 4 AA1 5 SER A 82 THR A 87 1 O ILE A 84 N LEU A 53 SHEET 5 AA1 5 GLY A 105 LEU A 108 1 O GLY A 105 N VAL A 85 SHEET 1 AA2 5 VAL B 29 PHE B 35 0 SHEET 2 AA2 5 MET B 4 ALA B 9 1 N VAL B 6 O ASN B 30 SHEET 3 AA2 5 VAL B 52 THR B 55 1 O ILE B 54 N ALA B 9 SHEET 4 AA2 5 SER B 82 THR B 87 1 O LEU B 86 N THR B 55 SHEET 5 AA2 5 ILE B 106 LEU B 108 1 O VAL B 107 N THR B 87 CRYST1 121.691 121.691 78.863 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008218 0.004744 0.000000 0.00000 SCALE2 0.000000 0.009489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012680 0.00000