PDB Short entry for 5WB3 HEADER HYDROLASE/HYDROLASE INHIBITOR 27-JUN-17 5WB3 TITLE CRYSTAL STRUCTURE OF THE INFLUENZA VIRUS PA ENDONUCLEASE IN COMPLEX TITLE 2 WITH INHIBITOR 10J (SRI-30026) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS VIRUS, NUCLEASE, TRANSCRIPTION, CAP-SNATCHING, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KUMAR,S.W.WHITE REVDAT 3 11-DEC-19 5WB3 1 REMARK REVDAT 2 31-JAN-18 5WB3 1 AUTHOR REVDAT 1 03-JAN-18 5WB3 0 JRNL AUTH D.BEYLKIN,G.KUMAR,W.ZHOU,J.PARK,T.JEEVAN,C.LAGISETTI, JRNL AUTH 2 R.HARFOOT,R.J.WEBBY,S.W.WHITE,T.R.WEBB JRNL TITL PROTEIN-STRUCTURE ASSISTED OPTIMIZATION OF JRNL TITL 2 4,5-DIHYDROXYPYRIMIDINE-6-CARBOXAMIDE INHIBITORS OF JRNL TITL 3 INFLUENZA VIRUS ENDONUCLEASE. JRNL REF SCI REP V. 7 17139 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29215062 JRNL DOI 10.1038/S41598-017-17419-6 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5879 - 3.7654 1.00 2907 144 0.1920 0.2200 REMARK 3 2 3.7654 - 2.9891 1.00 2791 126 0.2365 0.2618 REMARK 3 3 2.9891 - 2.6114 1.00 2739 139 0.2343 0.2596 REMARK 3 4 2.6114 - 2.3727 1.00 2695 158 0.2441 0.2580 REMARK 3 5 2.3727 - 2.2026 1.00 2702 140 0.2862 0.3372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1492 REMARK 3 ANGLE : 0.583 2020 REMARK 3 CHIRALITY : 0.040 212 REMARK 3 PLANARITY : 0.004 259 REMARK 3 DIHEDRAL : 4.414 896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 129.0020 111.7836 286.5549 REMARK 3 T TENSOR REMARK 3 T11: 0.8043 T22: 0.4186 REMARK 3 T33: 0.5815 T12: -0.1289 REMARK 3 T13: 0.3626 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 4.5236 L22: 2.0104 REMARK 3 L33: 3.6755 L12: -0.8934 REMARK 3 L13: 1.0387 L23: -0.3431 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: -0.2837 S13: -0.3835 REMARK 3 S21: 0.3857 S22: -0.3754 S23: 0.1943 REMARK 3 S31: 0.9090 S32: -0.0107 S33: 0.1567 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1.0 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 1% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.34900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.15500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.34900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.15500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.34900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.15500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.34900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.15500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.34900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.15500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.34900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.15500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.34900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.15500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.34900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.34900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.15500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 272.09400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 272.09400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 272.09400 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 272.09400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 VAL A 127 CG1 CG2 REMARK 470 HIS A 128 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 -58.07 59.56 REMARK 500 THR A 162 -67.22 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 101.5 REMARK 620 3 GLU A 119 OE1 164.7 92.3 REMARK 620 4 ILE A 120 O 81.0 91.7 92.1 REMARK 620 5 GYA A 205 O1 82.6 175.9 83.6 88.5 REMARK 620 6 GYA A 205 O2 92.9 101.6 90.7 166.3 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 90.6 REMARK 620 3 GYA A 205 O5 87.7 170.1 REMARK 620 4 HOH A 305 O 91.2 92.7 97.1 REMARK 620 5 GYA A 205 O2 101.6 88.7 82.1 167.1 REMARK 620 6 HOH A 301 O 171.8 83.8 98.9 83.1 84.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GYA A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W3I RELATED DB: PDB REMARK 900 RELATED ID: 5W44 RELATED DB: PDB REMARK 900 RELATED ID: 5W73 RELATED DB: PDB REMARK 900 RELATED ID: 5W7U RELATED DB: PDB REMARK 900 RELATED ID: 5W92 RELATED DB: PDB REMARK 900 RELATED ID: 5W9G RELATED DB: PDB REMARK 900 RELATED ID: 5WA6 RELATED DB: PDB REMARK 900 RELATED ID: 5WA7 RELATED DB: PDB REMARK 900 RELATED ID: 5WAP RELATED DB: PDB DBREF 5WB3 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 5WB3 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 5WB3 MET A -19 UNP C3W5S0 INITIATING METHIONINE SEQADV 5WB3 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 5WB3 GLY A 51 UNP C3W5S0 LINKER SEQADV 5WB3 GLY A 52 UNP C3W5S0 LINKER SEQADV 5WB3 SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HET GYA A 205 40 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM GYA 2-[(2S)-1-{[(2-CHLOROPHENYL)SULFANYL]ACETYL}PYRROLIDIN- HETNAM 2 GYA 2-YL]-N-(5,6-DIMETHOXY-2,3-DIHYDRO-1H-INDEN-2-YL)-5- HETNAM 3 GYA HYDROXY-6-OXO-1,6-DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETSYN GYA SRI-30026 FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 GYA C28 H29 CL N4 O6 S FORMUL 7 HOH *16(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 52 1 22 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 137 1 12 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.22 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.46 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.08 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.06 LINK OE1 GLU A 119 MN MN A 201 1555 1555 2.27 LINK O ILE A 120 MN MN A 201 1555 1555 2.26 LINK MN MN A 201 O1 GYA A 205 1555 1555 1.98 LINK MN MN A 201 O2 GYA A 205 1555 1555 2.25 LINK MN MN A 202 O5 GYA A 205 1555 1555 1.97 LINK MN MN A 202 O HOH A 305 1555 1555 2.31 LINK MN MN A 202 O2 GYA A 205 1555 1555 2.02 LINK MN MN A 202 O HOH A 301 1555 1555 2.33 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 GYA A 205 SITE 1 AC2 5 GLU A 80 ASP A 108 GYA A 205 HOH A 301 SITE 2 AC2 5 HOH A 305 SITE 1 AC3 3 SER A 53 ARG A 75 LYS A 113 SITE 1 AC4 5 ILE A 30 GLU A 31 THR A 32 ASN A 33 SITE 2 AC4 5 LYS A 34 SITE 1 AC5 12 TYR A 24 LYS A 34 ILE A 38 HIS A 41 SITE 2 AC5 12 GLU A 80 ASP A 108 GLU A 119 ILE A 120 SITE 3 AC5 12 MN A 201 MN A 202 HOH A 301 HOH A 308 CRYST1 90.698 90.698 134.310 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007445 0.00000