PDB Short entry for 5WJ8 HEADER CELL ADHESION 21-JUL-17 5WJ8 TITLE CRYSTAL STRUCTURE OF HUMAN CADHERIN-23 EC13-14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1308-1523; COMPND 5 SYNONYM: OTOCADHERIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH23, KIAA1774, KIAA1812, UNQ1894/PRO4340; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.VELEZ-CORTES,C.CONGHUI,P.DE-LA-TORRE,M.SOTOMAYOR REVDAT 6 15-NOV-23 5WJ8 1 REMARK REVDAT 5 04-OCT-23 5WJ8 1 LINK REVDAT 4 11-DEC-19 5WJ8 1 REMARK REVDAT 3 19-SEP-18 5WJ8 1 SOURCE JRNL REVDAT 2 01-AUG-18 5WJ8 1 JRNL REVDAT 1 04-JUL-18 5WJ8 0 JRNL AUTH A.JAIGANESH,P.DE-LA-TORRE,A.A.PATEL,D.J.TERMINE, JRNL AUTH 2 F.VELEZ-CORTES,C.CHEN,M.SOTOMAYOR JRNL TITL ZOOMING IN ON CADHERIN-23: STRUCTURAL DIVERSITY AND JRNL TITL 2 POTENTIAL MECHANISMS OF INHERITED DEAFNESS. JRNL REF STRUCTURE V. 26 1210 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30033219 JRNL DOI 10.1016/J.STR.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 27574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.66000 REMARK 3 B22 (A**2) : 1.66000 REMARK 3 B33 (A**2) : -5.37000 REMARK 3 B12 (A**2) : 0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1664 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1526 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2275 ; 1.500 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3538 ; 0.982 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 5.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;34.260 ;25.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;11.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1884 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 329 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 845 ; 0.868 ; 2.149 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 844 ; 0.868 ; 2.148 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1056 ; 1.454 ; 3.215 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1057 ; 1.453 ; 3.216 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 818 ; 0.950 ; 2.331 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 816 ; 0.947 ; 2.328 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1216 ; 1.609 ; 3.439 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1790 ; 6.008 ;26.314 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1766 ; 5.887 ;25.674 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1287 A 1386 REMARK 3 RESIDUE RANGE : A 1601 A 1603 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4609 142.3836 214.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.3629 REMARK 3 T33: 0.2270 T12: 0.0276 REMARK 3 T13: 0.0140 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.5300 L22: 1.8822 REMARK 3 L33: 4.3640 L12: -0.0627 REMARK 3 L13: -0.5136 L23: -0.9997 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: -0.1443 S13: 0.0480 REMARK 3 S21: 0.1742 S22: -0.0269 S23: 0.0708 REMARK 3 S31: -0.3960 S32: -0.1207 S33: -0.0320 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1387 A 1496 REMARK 3 RESIDUE RANGE : A 1604 A 1604 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0980 151.6922 167.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.1228 REMARK 3 T33: 0.2363 T12: 0.1672 REMARK 3 T13: 0.0595 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.9383 L22: 0.9666 REMARK 3 L33: 6.5306 L12: 0.3140 REMARK 3 L13: 0.8967 L23: -1.6309 REMARK 3 S TENSOR REMARK 3 S11: 0.1589 S12: -0.1762 S13: 0.1293 REMARK 3 S21: -0.1383 S22: -0.1060 S23: 0.0165 REMARK 3 S31: -0.3872 S32: -0.1487 S33: -0.0529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 71.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VH2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAOAC PH 4.5 0.2 M CACL2 30 REMARK 280 (V/V) ISOPROPANOL 20% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.33800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.16900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.33800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.16900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.33800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.16900 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.33800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.16900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1819 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1284 REMARK 465 ASP A 1285 REMARK 465 GLU A 1286 REMARK 465 ILE A 1497 REMARK 465 ASN A 1498 REMARK 465 ASP A 1499 REMARK 465 ASN A 1500 REMARK 465 LEU A 1501 REMARK 465 GLU A 1502 REMARK 465 HIS A 1503 REMARK 465 HIS A 1504 REMARK 465 HIS A 1505 REMARK 465 HIS A 1506 REMARK 465 HIS A 1507 REMARK 465 HIS A 1508 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1701 O HOH A 1701 47105 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1319 106.63 -162.51 REMARK 500 SER A1452 -41.19 -159.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1301 OE2 REMARK 620 2 ASP A1355 OD1 88.3 REMARK 620 3 GLU A1357 OE1 86.4 86.9 REMARK 620 4 ASP A1390 OD2 88.0 163.0 109.4 REMARK 620 5 HOH A1719 O 93.3 81.2 168.2 82.4 REMARK 620 6 HOH A1802 O 169.1 98.8 85.7 87.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1301 OE1 REMARK 620 2 GLU A1357 OE1 83.9 REMARK 620 3 GLU A1357 OE2 107.9 49.8 REMARK 620 4 ASP A1387 OD1 87.5 122.6 80.3 REMARK 620 5 GLU A1388 O 85.0 152.4 157.5 81.9 REMARK 620 6 ASP A1390 OD1 85.4 76.2 120.6 159.0 77.8 REMARK 620 7 ASP A1424 OD1 160.1 97.1 87.2 108.1 85.3 75.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1606 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1308 OE1 REMARK 620 2 GLU A1308 OE2 40.9 REMARK 620 3 GLU A1308 OE1 0.0 40.9 REMARK 620 4 GLU A1308 OE2 40.9 0.0 40.9 REMARK 620 5 HOH A1799 O 63.7 104.3 63.7 104.3 REMARK 620 6 HOH A1799 O 100.8 122.3 100.8 122.3 69.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1370 OD1 REMARK 620 2 GLY A1372 O 86.5 REMARK 620 3 LYS A1374 O 104.3 93.5 REMARK 620 4 ASP A1376 OD1 67.8 154.1 89.9 REMARK 620 5 ASP A1376 OD2 111.9 151.7 101.9 50.6 REMARK 620 6 HOH A1736 O 96.0 81.1 158.8 103.9 75.9 REMARK 620 7 HOH A1785 O 169.1 83.1 79.9 122.7 76.5 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1389 OD1 REMARK 620 2 ASN A1391 O 98.0 REMARK 620 3 ASP A1422 OD1 143.6 97.5 REMARK 620 4 ASP A1422 OD2 162.2 86.8 51.2 REMARK 620 5 ASP A1424 OD2 74.3 82.7 75.3 123.4 REMARK 620 6 ASN A1428 O 84.0 175.9 82.7 90.2 101.3 REMARK 620 7 ASP A1478 OD2 76.6 92.2 135.2 86.1 149.5 84.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1606 DBREF 5WJ8 A 1285 1500 UNP Q9H251 CAD23_HUMAN 1308 1523 SEQADV 5WJ8 MET A 1284 UNP Q9H251 INITIATING METHIONINE SEQADV 5WJ8 LEU A 1501 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 GLU A 1502 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1503 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1504 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1505 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1506 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1507 UNP Q9H251 EXPRESSION TAG SEQADV 5WJ8 HIS A 1508 UNP Q9H251 EXPRESSION TAG SEQRES 1 A 225 MET ASP GLU ALA VAL GLN PHE SER ASN ALA SER TYR GLU SEQRES 2 A 225 ALA ALA ILE LEU GLU ASN LEU ALA LEU GLY THR GLU ILE SEQRES 3 A 225 VAL ARG VAL GLN ALA TYR SER ILE ASP ASN LEU ASN GLN SEQRES 4 A 225 ILE THR TYR ARG PHE ASN ALA TYR THR SER THR GLN ALA SEQRES 5 A 225 LYS ALA LEU PHE LYS ILE ASP ALA ILE THR GLY VAL ILE SEQRES 6 A 225 THR VAL GLN GLY LEU VAL ASP ARG GLU LYS GLY ASP PHE SEQRES 7 A 225 TYR THR LEU THR VAL VAL ALA ASP ASP GLY GLY PRO LYS SEQRES 8 A 225 VAL ASP SER THR VAL LYS VAL TYR ILE THR VAL LEU ASP SEQRES 9 A 225 GLU ASN ASP ASN SER PRO ARG PHE ASP PHE THR SER ASP SEQRES 10 A 225 SER ALA VAL SER ILE PRO GLU ASP CSO PRO VAL GLY GLN SEQRES 11 A 225 ARG VAL ALA THR VAL LYS ALA TRP ASP PRO ASP ALA GLY SEQRES 12 A 225 SER ASN GLY GLN VAL VAL PHE SER LEU ALA SER GLY ASN SEQRES 13 A 225 ILE ALA GLY ALA PHE GLU ILE VAL THR THR ASN ASP SER SEQRES 14 A 225 ILE GLY GLU VAL PHE VAL ALA ARG PRO LEU ASP ARG GLU SEQRES 15 A 225 GLU LEU ASP HIS TYR ILE LEU GLN VAL VAL ALA SER ASP SEQRES 16 A 225 ARG GLY THR PRO PRO ARG LYS LYS ASP HIS ILE LEU GLN SEQRES 17 A 225 VAL THR ILE LEU ASP ILE ASN ASP ASN LEU GLU HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS MODRES 5WJ8 CSO A 1409 CYS MODIFIED RESIDUE HET CSO A1409 7 HET CA A1601 1 HET CA A1602 1 HET CA A1603 1 HET CA A1604 1 HET CL A1605 1 HET K A1606 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 CA 4(CA 2+) FORMUL 6 CL CL 1- FORMUL 7 K K 1+ FORMUL 8 HOH *133(H2 O) HELIX 1 AA1 SER A 1332 LEU A 1338 1 7 HELIX 2 AA2 ALA A 1425 GLY A 1429 5 5 HELIX 3 AA3 ASN A 1439 GLY A 1442 5 4 SHEET 1 AA1 2 GLN A1289 PHE A1290 0 SHEET 2 AA1 2 ALA A1314 TYR A1315 -1 O TYR A1315 N GLN A1289 SHEET 1 AA2 4 TYR A1295 LEU A1300 0 SHEET 2 AA2 4 SER A1377 LEU A1386 1 O LEU A1386 N ILE A1299 SHEET 3 AA2 4 PHE A1361 ASP A1369 -1 N TYR A1362 O ILE A1383 SHEET 4 AA2 4 THR A1324 PHE A1327 -1 N ARG A1326 O VAL A1367 SHEET 1 AA3 3 GLU A1308 ARG A1311 0 SHEET 2 AA3 3 VAL A1347 VAL A1350 -1 O ILE A1348 N VAL A1310 SHEET 3 AA3 3 PHE A1339 ILE A1341 -1 N LYS A1340 O THR A1349 SHEET 1 AA4 4 ARG A1394 PHE A1395 0 SHEET 2 AA4 4 ARG A1414 TRP A1421 -1 O TRP A1421 N ARG A1394 SHEET 3 AA4 4 ILE A1453 VAL A1458 -1 O VAL A1456 N VAL A1415 SHEET 4 AA4 4 PHE A1444 THR A1449 -1 N VAL A1447 O GLU A1455 SHEET 1 AA5 4 ALA A1402 PRO A1406 0 SHEET 2 AA5 4 LYS A1485 LEU A1495 1 O THR A1493 N ILE A1405 SHEET 3 AA5 4 HIS A1469 ASP A1478 -1 N VAL A1474 O HIS A1488 SHEET 4 AA5 4 VAL A1431 SER A1437 -1 N VAL A1432 O SER A1477 LINK C ASP A1408 N CSO A1409 1555 1555 1.34 LINK C CSO A1409 N PRO A1410 1555 1555 1.34 LINK OE2 GLU A1301 CA CA A1602 1555 1555 2.40 LINK OE1 GLU A1301 CA CA A1603 1555 1555 2.25 LINK OE1 GLU A1308 K K A1606 1555 1555 3.21 LINK OE2 GLU A1308 K K A1606 1555 1555 3.13 LINK OE1 GLU A1308 K K A1606 1555 11557 2.81 LINK OE2 GLU A1308 K K A1606 1555 11557 2.77 LINK OD1 ASP A1355 CA CA A1602 1555 1555 2.34 LINK OE1 GLU A1357 CA CA A1602 1555 1555 2.15 LINK OE1 GLU A1357 CA CA A1603 1555 1555 2.67 LINK OE2 GLU A1357 CA CA A1603 1555 1555 2.49 LINK OD1 ASP A1370 CA CA A1601 1555 1555 2.35 LINK O GLY A1372 CA CA A1601 1555 1555 2.31 LINK O LYS A1374 CA CA A1601 1555 1555 2.30 LINK OD1 ASP A1376 CA CA A1601 1555 1555 2.59 LINK OD2 ASP A1376 CA CA A1601 1555 1555 2.53 LINK OD1 ASP A1387 CA CA A1603 1555 1555 2.38 LINK O GLU A1388 CA CA A1603 1555 1555 2.43 LINK OD1 ASN A1389 CA CA A1604 1555 1555 2.39 LINK OD2 ASP A1390 CA CA A1602 1555 1555 2.41 LINK OD1 ASP A1390 CA CA A1603 1555 1555 2.35 LINK O ASN A1391 CA CA A1604 1555 1555 2.27 LINK OD1 ASP A1422 CA CA A1604 1555 1555 2.66 LINK OD2 ASP A1422 CA CA A1604 1555 1555 2.44 LINK OD1 ASP A1424 CA CA A1603 1555 1555 2.35 LINK OD2 ASP A1424 CA CA A1604 1555 1555 2.41 LINK O ASN A1428 CA CA A1604 1555 1555 2.31 LINK OD2 ASP A1478 CA CA A1604 1555 1555 2.50 LINK CA CA A1601 O HOH A1736 1555 1555 2.43 LINK CA CA A1601 O HOH A1785 1555 1555 2.29 LINK CA CA A1602 O HOH A1719 1555 1555 2.32 LINK CA CA A1602 O HOH A1802 1555 1555 2.31 LINK K K A1606 O HOH A1799 1555 1555 2.38 LINK K K A1606 O HOH A1799 1555 11557 2.35 CISPEP 1 THR A 1481 PRO A 1482 0 0.11 SITE 1 AC1 6 ASP A1370 GLY A1372 LYS A1374 ASP A1376 SITE 2 AC1 6 HOH A1736 HOH A1785 SITE 1 AC2 6 GLU A1301 ASP A1355 GLU A1357 ASP A1390 SITE 2 AC2 6 HOH A1719 HOH A1802 SITE 1 AC3 6 GLU A1301 GLU A1357 ASP A1387 GLU A1388 SITE 2 AC3 6 ASP A1390 ASP A1424 SITE 1 AC4 6 ASN A1389 ASN A1391 ASP A1422 ASP A1424 SITE 2 AC4 6 ASN A1428 ASP A1478 SITE 1 AC5 1 ARG A1311 SITE 1 AC6 2 GLU A1308 HOH A1799 CRYST1 74.712 74.712 213.507 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013385 0.007728 0.000000 0.00000 SCALE2 0.000000 0.015455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004684 0.00000