PDB Short entry for 5WPK HEADER OXIDOREDUCTASE 04-AUG-17 5WPK TITLE STRUCTURE OF THE CLASS II 3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE TITLE 2 FROM STREPTOCOCCUS PNEUMONIAE BOUND TO HMG-COA AND IN A PARTIALLY TITLE 3 CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMG-COA REDUCTASE; COMPND 5 EC: 1.1.1.34; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: MVAA, MVAA_1, MVAA_3, AWW74_09880, ERS019416_00185, SOURCE 5 ERS019687_00346, ERS020135_00205, ERS020138_01692, ERS020141_01867, SOURCE 6 ERS020145_01986, ERS020146_01579, ERS020155_00051, ERS020158_01777, SOURCE 7 ERS020520_02006, ERS020525_01644, ERS020528_00536, ERS020531_01915, SOURCE 8 ERS020532_00514, ERS020539_01756, ERS020726_02213, ERS020726_02223, SOURCE 9 ERS020822_01277, ERS021354_03805, ERS021629_07183, ERS021733_05462, SOURCE 10 ERS232524_02161, ERS367337_00780, ERS409444_00519; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PSKB3 KEYWDS 3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE, HMG-COA, CONFORMATIONAL KEYWDS 2 CHANGE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.R.MILLER,Y.KUNG REVDAT 3 04-OCT-23 5WPK 1 REMARK REVDAT 2 01-JAN-20 5WPK 1 REMARK REVDAT 1 25-APR-18 5WPK 0 JRNL AUTH B.R.MILLER,Y.KUNG JRNL TITL STRUCTURAL FEATURES AND DOMAIN MOVEMENTS CONTROLLING JRNL TITL 2 SUBSTRATE BINDING AND COFACTOR SPECIFICITY IN CLASS II JRNL TITL 3 HMG-COA REDUCTASE. JRNL REF BIOCHEMISTRY V. 57 654 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29224355 JRNL DOI 10.1021/ACS.BIOCHEM.7B00999 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 478.83 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 36792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2419 - 5.3723 0.94 2762 131 0.1758 0.1993 REMARK 3 2 5.3723 - 4.2795 0.94 2719 144 0.1466 0.2090 REMARK 3 3 4.2795 - 3.7431 0.94 2710 120 0.1536 0.1740 REMARK 3 4 3.7431 - 3.4029 0.93 2664 147 0.1680 0.2383 REMARK 3 5 3.4029 - 3.1602 0.94 2739 117 0.1783 0.2654 REMARK 3 6 3.1602 - 2.9746 0.94 2720 131 0.1939 0.2321 REMARK 3 7 2.9746 - 2.8261 0.93 2663 146 0.1986 0.2814 REMARK 3 8 2.8261 - 2.7034 0.93 2686 150 0.2113 0.2659 REMARK 3 9 2.7034 - 2.5996 0.93 2663 127 0.2088 0.2682 REMARK 3 10 2.5996 - 2.5101 0.94 2654 135 0.2266 0.2720 REMARK 3 11 2.5101 - 2.4318 0.93 2679 152 0.2258 0.2853 REMARK 3 12 2.4318 - 2.3624 0.93 2719 126 0.2324 0.2869 REMARK 3 13 2.3624 - 2.3003 0.92 2621 152 0.2452 0.3234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6300 REMARK 3 ANGLE : 0.627 8553 REMARK 3 CHIRALITY : 0.042 977 REMARK 3 PLANARITY : 0.004 1102 REMARK 3 DIHEDRAL : 6.704 5142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.241 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.15140 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58320 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3QAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8.5, 100-250 MM REMARK 280 LITHIUM SULFATE, 15-25% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.62400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 380 REMARK 465 LEU A 381 REMARK 465 GLN A 382 REMARK 465 ALA A 383 REMARK 465 LYS A 384 REMARK 465 SER A 385 REMARK 465 LEU A 386 REMARK 465 ALA A 387 REMARK 465 LEU A 388 REMARK 465 LEU A 389 REMARK 465 ALA A 390 REMARK 465 GLY A 391 REMARK 465 ALA A 392 REMARK 465 SER A 393 REMARK 465 GLU A 394 REMARK 465 SER A 395 REMARK 465 GLU A 396 REMARK 465 VAL A 397 REMARK 465 ALA A 398 REMARK 465 PRO A 399 REMARK 465 LEU A 400 REMARK 465 VAL A 401 REMARK 465 GLU A 402 REMARK 465 ARG A 403 REMARK 465 LEU A 404 REMARK 465 ILE A 405 REMARK 465 SER A 406 REMARK 465 ASP A 407 REMARK 465 LYS A 408 REMARK 465 THR A 409 REMARK 465 PHE A 410 REMARK 465 ASN A 411 REMARK 465 LEU A 412 REMARK 465 GLU A 413 REMARK 465 THR A 414 REMARK 465 ALA A 415 REMARK 465 GLN A 416 REMARK 465 ARG A 417 REMARK 465 TYR A 418 REMARK 465 LEU A 419 REMARK 465 GLU A 420 REMARK 465 ASN A 421 REMARK 465 LEU A 422 REMARK 465 ARG A 423 REMARK 465 SER A 424 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 GLN A 376 CG CD OE1 NE2 REMARK 470 ILE B 3 CG1 CG2 CD1 REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 SER B 146 OG REMARK 470 ILE B 147 CG1 CG2 CD1 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 ILE B 405 CG1 CG2 CD1 REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 GLU B 413 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 601 O HOH A 630 2.12 REMARK 500 O HOH B 619 O HOH B 769 2.15 REMARK 500 O HOH A 786 O HOH B 696 2.15 REMARK 500 O HOH B 692 O HOH B 715 2.15 REMARK 500 O HOH A 635 O HOH B 774 2.15 REMARK 500 O TYR A 297 O HOH A 601 2.17 REMARK 500 O HOH A 698 O HOH A 709 2.18 REMARK 500 O HOH B 603 O HOH B 781 2.18 REMARK 500 O SER A 4 O HOH A 602 2.19 REMARK 500 O HOH A 608 O HOH A 777 2.19 REMARK 500 O HOH A 754 O HOH A 771 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 802 O HOH B 621 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 175.64 65.62 REMARK 500 SER A 83 -9.36 77.02 REMARK 500 GLN A 178 -140.58 67.66 REMARK 500 SER A 217 37.34 -145.60 REMARK 500 ASP A 235 -13.58 -155.48 REMARK 500 SER A 371 -93.80 -115.19 REMARK 500 GLN A 376 -50.22 -146.04 REMARK 500 SER B 83 -9.69 77.38 REMARK 500 SER B 146 -34.20 -147.82 REMARK 500 LYS B 149 45.35 -69.69 REMARK 500 GLN B 178 -161.55 62.34 REMARK 500 SER B 217 37.37 -145.35 REMARK 500 ASP B 235 -4.78 73.86 REMARK 500 SER B 371 -94.39 -114.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 829 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 6.58 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 501 REMARK 610 PE4 B 505 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HMG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HMG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 505 DBREF1 5WPK A 1 424 UNP A0A0D6J7E8_STREE DBREF2 5WPK A A0A0D6J7E8 1 424 DBREF1 5WPK B 1 424 UNP A0A0D6J7E8_STREE DBREF2 5WPK B A0A0D6J7E8 1 424 SEQADV 5WPK GLY A -1 UNP A0A0D6J7E EXPRESSION TAG SEQADV 5WPK HIS A 0 UNP A0A0D6J7E EXPRESSION TAG SEQADV 5WPK GLU A 355 UNP A0A0D6J7E VAL 355 CONFLICT SEQADV 5WPK GLY B -1 UNP A0A0D6J7E EXPRESSION TAG SEQADV 5WPK HIS B 0 UNP A0A0D6J7E EXPRESSION TAG SEQADV 5WPK GLU B 355 UNP A0A0D6J7E VAL 355 CONFLICT SEQRES 1 A 426 GLY HIS MET LYS ILE SER TRP ASN GLY PHE SER LYS LYS SEQRES 2 A 426 SER TYR GLN GLU ARG LEU GLU LEU LEU LYS ALA GLN ALA SEQRES 3 A 426 LEU LEU SER PRO GLU ARG GLN ALA SER LEU GLU LYS ASP SEQRES 4 A 426 GLU GLN MET SER VAL THR VAL ALA ASP GLN LEU SER GLU SEQRES 5 A 426 ASN VAL VAL GLY THR PHE SER LEU PRO TYR SER LEU VAL SEQRES 6 A 426 PRO GLU VAL LEU VAL ASN GLY GLN GLU TYR THR VAL PRO SEQRES 7 A 426 TYR VAL THR GLU GLU PRO SER VAL VAL ALA ALA ALA SER SEQRES 8 A 426 TYR ALA SER LYS ILE ILE LYS ARG ALA GLY GLY PHE THR SEQRES 9 A 426 ALA GLN VAL HIS GLN ARG GLN MET ILE GLY GLN VAL ALA SEQRES 10 A 426 LEU TYR GLN VAL ALA ASN PRO LYS LEU ALA GLN GLU LYS SEQRES 11 A 426 ILE ALA SER LYS LYS ALA GLU LEU LEU GLU LEU ALA ASN SEQRES 12 A 426 GLN ALA TYR PRO SER ILE VAL LYS ARG GLY GLY GLY ALA SEQRES 13 A 426 ARG ASP LEU HIS VAL GLU GLN ILE LYS GLY GLU PRO ASP SEQRES 14 A 426 PHE LEU VAL VAL TYR ILE HIS VAL ASP THR GLN GLU ALA SEQRES 15 A 426 MET GLY ALA ASN MET LEU ASN THR MET LEU GLU ALA LEU SEQRES 16 A 426 LYS PRO VAL LEU GLU GLU LEU SER GLN GLY GLN SER LEU SEQRES 17 A 426 MET GLY ILE LEU SER ASN TYR ALA THR ASP SER LEU VAL SEQRES 18 A 426 THR ALA SER CYS ARG ILE ALA PHE ARG TYR LEU SER ARG SEQRES 19 A 426 GLN LYS ASP GLN GLY ARG GLU ILE ALA GLU LYS ILE ALA SEQRES 20 A 426 LEU ALA SER GLN PHE ALA GLN ALA ASP PRO TYR ARG ALA SEQRES 21 A 426 ALA THR HIS ASN LYS GLY ILE PHE ASN GLY ILE ASP ALA SEQRES 22 A 426 ILE LEU ILE ALA THR GLY ASN ASP TRP ARG ALA ILE GLU SEQRES 23 A 426 ALA GLY ALA HIS ALA PHE ALA SER ARG ASP GLY ARG TYR SEQRES 24 A 426 GLN GLY LEU SER CYS TRP THR LEU ASP LEU GLU ARG GLU SEQRES 25 A 426 GLU LEU VAL GLY GLU MET THR LEU PRO MET PRO VAL ALA SEQRES 26 A 426 THR LYS GLY GLY SER ILE GLY LEU ASN PRO ARG VAL ALA SEQRES 27 A 426 LEU SER HIS ASP LEU LEU GLY ASN PRO SER ALA ARG GLU SEQRES 28 A 426 LEU ALA GLN ILE ILE GLU SER ILE GLY LEU ALA GLN ASN SEQRES 29 A 426 PHE ALA ALA LEU LYS ALA LEU VAL SER THR GLY ILE GLN SEQRES 30 A 426 GLN GLY HIS MET LYS LEU GLN ALA LYS SER LEU ALA LEU SEQRES 31 A 426 LEU ALA GLY ALA SER GLU SER GLU VAL ALA PRO LEU VAL SEQRES 32 A 426 GLU ARG LEU ILE SER ASP LYS THR PHE ASN LEU GLU THR SEQRES 33 A 426 ALA GLN ARG TYR LEU GLU ASN LEU ARG SER SEQRES 1 B 426 GLY HIS MET LYS ILE SER TRP ASN GLY PHE SER LYS LYS SEQRES 2 B 426 SER TYR GLN GLU ARG LEU GLU LEU LEU LYS ALA GLN ALA SEQRES 3 B 426 LEU LEU SER PRO GLU ARG GLN ALA SER LEU GLU LYS ASP SEQRES 4 B 426 GLU GLN MET SER VAL THR VAL ALA ASP GLN LEU SER GLU SEQRES 5 B 426 ASN VAL VAL GLY THR PHE SER LEU PRO TYR SER LEU VAL SEQRES 6 B 426 PRO GLU VAL LEU VAL ASN GLY GLN GLU TYR THR VAL PRO SEQRES 7 B 426 TYR VAL THR GLU GLU PRO SER VAL VAL ALA ALA ALA SER SEQRES 8 B 426 TYR ALA SER LYS ILE ILE LYS ARG ALA GLY GLY PHE THR SEQRES 9 B 426 ALA GLN VAL HIS GLN ARG GLN MET ILE GLY GLN VAL ALA SEQRES 10 B 426 LEU TYR GLN VAL ALA ASN PRO LYS LEU ALA GLN GLU LYS SEQRES 11 B 426 ILE ALA SER LYS LYS ALA GLU LEU LEU GLU LEU ALA ASN SEQRES 12 B 426 GLN ALA TYR PRO SER ILE VAL LYS ARG GLY GLY GLY ALA SEQRES 13 B 426 ARG ASP LEU HIS VAL GLU GLN ILE LYS GLY GLU PRO ASP SEQRES 14 B 426 PHE LEU VAL VAL TYR ILE HIS VAL ASP THR GLN GLU ALA SEQRES 15 B 426 MET GLY ALA ASN MET LEU ASN THR MET LEU GLU ALA LEU SEQRES 16 B 426 LYS PRO VAL LEU GLU GLU LEU SER GLN GLY GLN SER LEU SEQRES 17 B 426 MET GLY ILE LEU SER ASN TYR ALA THR ASP SER LEU VAL SEQRES 18 B 426 THR ALA SER CYS ARG ILE ALA PHE ARG TYR LEU SER ARG SEQRES 19 B 426 GLN LYS ASP GLN GLY ARG GLU ILE ALA GLU LYS ILE ALA SEQRES 20 B 426 LEU ALA SER GLN PHE ALA GLN ALA ASP PRO TYR ARG ALA SEQRES 21 B 426 ALA THR HIS ASN LYS GLY ILE PHE ASN GLY ILE ASP ALA SEQRES 22 B 426 ILE LEU ILE ALA THR GLY ASN ASP TRP ARG ALA ILE GLU SEQRES 23 B 426 ALA GLY ALA HIS ALA PHE ALA SER ARG ASP GLY ARG TYR SEQRES 24 B 426 GLN GLY LEU SER CYS TRP THR LEU ASP LEU GLU ARG GLU SEQRES 25 B 426 GLU LEU VAL GLY GLU MET THR LEU PRO MET PRO VAL ALA SEQRES 26 B 426 THR LYS GLY GLY SER ILE GLY LEU ASN PRO ARG VAL ALA SEQRES 27 B 426 LEU SER HIS ASP LEU LEU GLY ASN PRO SER ALA ARG GLU SEQRES 28 B 426 LEU ALA GLN ILE ILE GLU SER ILE GLY LEU ALA GLN ASN SEQRES 29 B 426 PHE ALA ALA LEU LYS ALA LEU VAL SER THR GLY ILE GLN SEQRES 30 B 426 GLN GLY HIS MET LYS LEU GLN ALA LYS SER LEU ALA LEU SEQRES 31 B 426 LEU ALA GLY ALA SER GLU SER GLU VAL ALA PRO LEU VAL SEQRES 32 B 426 GLU ARG LEU ILE SER ASP LYS THR PHE ASN LEU GLU THR SEQRES 33 B 426 ALA GLN ARG TYR LEU GLU ASN LEU ARG SER HET HMG A 500 58 HET GOL A 501 6 HET PE4 B 501 16 HET HMG B 502 58 HET GOL B 503 6 HET GOL B 504 6 HET PE4 B 505 16 HETNAM HMG 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A HETNAM GOL GLYCEROL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN HMG (S)-HMG-COA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 3 HMG 2(C27 H39 N7 O20 P3 S 5-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 PE4 2(C16 H34 O8) FORMUL 10 HOH *417(H2 O) HELIX 1 AA1 GLY A 7 LYS A 11 5 5 HELIX 2 AA2 SER A 12 ALA A 24 1 13 HELIX 3 AA3 SER A 27 LYS A 36 1 10 HELIX 4 AA4 SER A 41 SER A 49 1 9 HELIX 5 AA5 SER A 83 ALA A 98 1 16 HELIX 6 AA6 ASN A 121 SER A 131 1 11 HELIX 7 AA7 LYS A 132 ALA A 143 1 12 HELIX 8 AA8 TYR A 144 ARG A 150 1 7 HELIX 9 AA9 GLY A 182 GLN A 202 1 21 HELIX 10 AB1 ALA A 214 ASP A 216 5 3 HELIX 11 AB2 ARG A 228 LEU A 230 5 3 HELIX 12 AB3 GLN A 236 ASP A 254 1 19 HELIX 13 AB4 ASP A 254 THR A 276 1 23 HELIX 14 AB5 ASP A 279 ALA A 291 1 13 HELIX 15 AB6 ASN A 332 LEU A 342 1 11 HELIX 16 AB7 SER A 346 SER A 371 1 26 HELIX 17 AB8 GLY B 7 LYS B 11 5 5 HELIX 18 AB9 SER B 12 ALA B 24 1 13 HELIX 19 AC1 SER B 27 LYS B 36 1 10 HELIX 20 AC2 SER B 41 SER B 49 1 9 HELIX 21 AC3 SER B 83 ALA B 98 1 16 HELIX 22 AC4 ASN B 121 SER B 131 1 11 HELIX 23 AC5 LYS B 132 ASN B 141 1 10 HELIX 24 AC6 ALA B 183 GLN B 202 1 20 HELIX 25 AC7 ALA B 214 ASP B 216 5 3 HELIX 26 AC8 PHE B 227 SER B 231 1 5 HELIX 27 AC9 ASP B 235 ASP B 254 1 20 HELIX 28 AD1 ASP B 254 THR B 276 1 23 HELIX 29 AD2 ASP B 279 ALA B 291 1 13 HELIX 30 AD3 ASN B 332 LEU B 342 1 11 HELIX 31 AD4 SER B 346 SER B 371 1 26 HELIX 32 AD5 GLN B 375 ALA B 390 1 16 HELIX 33 AD6 SER B 393 SER B 395 5 3 HELIX 34 AD7 GLU B 396 ASP B 407 1 12 HELIX 35 AD8 ASN B 411 SER B 424 1 14 SHEET 1 AA1 4 GLN A 71 TYR A 77 0 SHEET 2 AA1 4 VAL A 52 VAL A 68 -1 N VAL A 63 O VAL A 75 SHEET 3 AA1 4 VAL B 52 VAL B 68 -1 O LEU B 58 N PHE A 56 SHEET 4 AA1 4 GLN B 71 TYR B 77 -1 O VAL B 75 N VAL B 63 SHEET 1 AA2 4 PHE A 101 VAL A 105 0 SHEET 2 AA2 4 LEU A 218 ALA A 226 -1 O SER A 222 N THR A 102 SHEET 3 AA2 4 GLU A 311 PRO A 319 -1 O LEU A 312 N ILE A 225 SHEET 4 AA2 4 SER A 301 ASP A 306 -1 N CYS A 302 O GLU A 315 SHEET 1 AA3 4 GLY A 153 ILE A 162 0 SHEET 2 AA3 4 PHE A 168 ASP A 176 -1 O ASP A 176 N GLY A 153 SHEET 3 AA3 4 MET A 110 TYR A 117 -1 N LEU A 116 O LEU A 169 SHEET 4 AA3 4 GLN A 204 SER A 211 -1 O GLN A 204 N TYR A 117 SHEET 1 AA4 4 THR B 102 VAL B 105 0 SHEET 2 AA4 4 LEU B 218 ALA B 226 -1 O THR B 220 N GLN B 104 SHEET 3 AA4 4 GLU B 311 PRO B 319 -1 O LEU B 312 N ILE B 225 SHEET 4 AA4 4 SER B 301 ASP B 306 -1 N CYS B 302 O GLU B 315 SHEET 1 AA5 4 ALA B 154 ILE B 162 0 SHEET 2 AA5 4 PHE B 168 ASP B 176 -1 O HIS B 174 N ARG B 155 SHEET 3 AA5 4 GLN B 109 TYR B 117 -1 N GLY B 112 O ILE B 173 SHEET 4 AA5 4 GLN B 204 LEU B 210 -1 O LEU B 206 N ALA B 115 CISPEP 1 GLU A 165 PRO A 166 0 -3.44 CISPEP 2 GLU B 165 PRO B 166 0 -2.94 SITE 1 AC1 35 TRP A 5 ASN A 6 GLY A 7 PHE A 8 SITE 2 AC1 35 SER A 9 GLU A 81 SER A 83 VAL A 84 SITE 3 AC1 35 ALA A 86 ALA A 87 SER A 89 TYR A 90 SITE 4 AC1 35 LYS A 93 ARG A 257 THR A 260 GLY A 264 SITE 5 AC1 35 ASN A 267 ALA A 364 ALA A 365 LEU A 369 SITE 6 AC1 35 ILE A 374 MET A 379 HOH A 604 HOH A 624 SITE 7 AC1 35 HOH A 640 HOH A 648 HOH A 652 HOH A 677 SITE 8 AC1 35 HOH A 682 HOH A 709 HOH A 716 GLU B 50 SITE 9 AC1 35 ASN B 51 HOH B 668 HOH B 678 SITE 1 AC2 6 ALA A 180 MET A 181 GLY A 182 ALA A 183 SITE 2 AC2 6 ASN A 184 LYS A 325 SITE 1 AC3 7 VAL A 42 THR A 43 ASP A 46 HOH A 694 SITE 2 AC3 7 SER B 12 TYR B 13 GLN B 14 SITE 1 AC4 27 GLU A 50 ASN A 51 GLY B 7 SER B 9 SITE 2 AC4 27 GLU B 81 SER B 83 ALA B 86 ALA B 87 SITE 3 AC4 27 TYR B 90 ARG B 257 THR B 260 GLY B 264 SITE 4 AC4 27 ALA B 364 ALA B 365 LEU B 369 ILE B 374 SITE 5 AC4 27 GLY B 377 LYS B 380 LEU B 381 LYS B 384 SITE 6 AC4 27 HOH B 607 HOH B 639 HOH B 640 HOH B 667 SITE 7 AC4 27 HOH B 673 HOH B 690 HOH B 696 SITE 1 AC5 9 ALA A 24 LEU A 26 SER A 27 GLN B 104 SITE 2 AC5 9 HIS B 106 THR B 220 GLU B 315 HOH B 635 SITE 3 AC5 9 HOH B 708 SITE 1 AC6 7 LEU B 139 ALA B 140 ALA B 143 TYR B 144 SITE 2 AC6 7 THR B 188 MET B 189 ALA B 192 SITE 1 AC7 8 TRP B 5 GLN B 23 LEU B 25 GLN B 71 SITE 2 AC7 8 GLU B 72 THR B 74 GLY B 343 HOH B 646 CRYST1 57.865 131.248 57.957 90.00 102.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017282 0.000000 0.003845 0.00000 SCALE2 0.000000 0.007619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017676 0.00000