PDB Short entry for 5WRV HEADER PROTEIN TRANSPORT 04-DEC-16 5WRV TITLE COMPLEX STRUCTURE OF HUMAN SRP72/SRP68 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE SUBUNIT SRP68; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 509-614; COMPND 5 SYNONYM: SRP68,SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SIGNAL RECOGNITION PARTICLE SUBUNIT SRP72; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 1-163; COMPND 12 SYNONYM: SRP72,SIGNAL RECOGNITION PARTICLE 72 KDA PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRP68; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SRP72; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS COMPLEX, HUMAN, SRP72, SRP68, SIGNAL RECOGNITION PARTICLE, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.GAO,Z.CHEN REVDAT 3 20-MAR-24 5WRV 1 REMARK REVDAT 2 05-JUL-17 5WRV 1 JRNL REMARK REVDAT 1 21-JUN-17 5WRV 0 JRNL AUTH Y.GAO,Q.ZHANG,Y.LANG,Y.LIU,X.DONG,Z.CHEN,W.TIAN,J.TANG,W.WU, JRNL AUTH 2 Y.TONG,Z.CHEN JRNL TITL HUMAN APO-SRP72 AND SRP68/72 COMPLEX STRUCTURES REVEAL THE JRNL TITL 2 MOLECULAR BASIS OF PROTEIN TRANSLOCATION JRNL REF J MOL CELL BIOL V. 9 220 2017 JRNL REFN ESSN 1759-4685 JRNL PMID 28369529 JRNL DOI 10.1093/JMCB/MJX010 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : -0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1500 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2029 ; 1.007 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 4.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;34.942 ;24.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;12.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.577 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1110 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1500 ; 2.490 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 75 ;28.069 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1634 ;12.727 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5WRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.61200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 62.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.00050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.00050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.00050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.00050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.00050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.00050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 381 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 389 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 509 REMARK 465 LEU A 510 REMARK 465 PRO A 511 REMARK 465 ASP A 512 REMARK 465 VAL A 513 REMARK 465 GLN A 514 REMARK 465 GLU A 515 REMARK 465 LEU A 516 REMARK 465 ILE A 517 REMARK 465 THR A 518 REMARK 465 GLN A 519 REMARK 465 VAL A 520 REMARK 465 ARG A 521 REMARK 465 SER A 522 REMARK 465 GLU A 523 REMARK 465 LYS A 524 REMARK 465 CYS A 525 REMARK 465 SER A 526 REMARK 465 LEU A 527 REMARK 465 GLN A 528 REMARK 465 ALA A 529 REMARK 465 ALA A 530 REMARK 465 ALA A 531 REMARK 465 ILE A 532 REMARK 465 LEU A 533 REMARK 465 ASP A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 ASP A 537 REMARK 465 ALA A 538 REMARK 465 HIS A 539 REMARK 465 GLN A 540 REMARK 465 THR A 541 REMARK 465 GLU A 542 REMARK 465 THR A 543 REMARK 465 SER A 544 REMARK 465 SER A 545 REMARK 465 SER A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 LYS A 549 REMARK 465 ASP A 550 REMARK 465 ASN A 551 REMARK 465 LYS A 552 REMARK 465 PRO A 553 REMARK 465 LEU A 554 REMARK 465 VAL A 555 REMARK 465 GLU A 556 REMARK 465 ARG A 557 REMARK 465 PHE A 558 REMARK 465 GLU A 559 REMARK 465 THR A 560 REMARK 465 PHE A 561 REMARK 465 CYS A 562 REMARK 465 LEU A 563 REMARK 465 ASP A 564 REMARK 465 PRO A 565 REMARK 465 SER A 566 REMARK 465 LEU A 567 REMARK 465 VAL A 568 REMARK 465 THR A 569 REMARK 465 LYS A 570 REMARK 465 GLN A 571 REMARK 465 ALA A 572 REMARK 465 ASN A 573 REMARK 465 LEU A 574 REMARK 465 VAL A 575 REMARK 465 HIS A 576 REMARK 465 PHE A 577 REMARK 465 PRO A 578 REMARK 465 PRO A 579 REMARK 465 GLY A 580 REMARK 465 PHE A 581 REMARK 465 GLN A 582 REMARK 465 PRO A 583 REMARK 465 ILE A 584 REMARK 465 PRO A 585 REMARK 465 CYS A 586 REMARK 465 LYS A 587 REMARK 465 THR A 611 REMARK 465 LYS A 612 REMARK 465 SER A 613 REMARK 465 GLY A 614 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 9 CG1 CG2 REMARK 470 GLN B 39 CD OE1 NE2 REMARK 470 LYS B 42 NZ REMARK 470 LYS B 62 NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ASN B 77 OD1 ND2 REMARK 470 ASN B 92 OD1 ND2 REMARK 470 ASN B 105 CG OD1 ND2 REMARK 470 GLN B 106 OE1 NE2 REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 ASP B 142 CG OD1 OD2 REMARK 470 ASN B 160 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 79 -8.35 -59.74 REMARK 500 SER B 79 26.30 86.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 833 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 834 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 835 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH B 488 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 489 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 490 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 491 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 113 OE2 REMARK 620 2 TYR B 132 OH 120.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WRW RELATED DB: PDB DBREF 5WRV A 509 614 UNP Q9UHB9 SRP68_HUMAN 509 614 DBREF 5WRV B 1 163 UNP O76094 SRP72_HUMAN 1 163 SEQADV 5WRV ALA A 608 UNP Q9UHB9 GLU 608 ENGINEERED MUTATION SEQADV 5WRV ALA A 609 UNP Q9UHB9 GLN 609 ENGINEERED MUTATION SEQADV 5WRV ALA A 610 UNP Q9UHB9 LYS 610 ENGINEERED MUTATION SEQRES 1 A 106 ASP LEU PRO ASP VAL GLN GLU LEU ILE THR GLN VAL ARG SEQRES 2 A 106 SER GLU LYS CYS SER LEU GLN ALA ALA ALA ILE LEU ASP SEQRES 3 A 106 ALA ASN ASP ALA HIS GLN THR GLU THR SER SER SER GLN SEQRES 4 A 106 VAL LYS ASP ASN LYS PRO LEU VAL GLU ARG PHE GLU THR SEQRES 5 A 106 PHE CYS LEU ASP PRO SER LEU VAL THR LYS GLN ALA ASN SEQRES 6 A 106 LEU VAL HIS PHE PRO PRO GLY PHE GLN PRO ILE PRO CYS SEQRES 7 A 106 LYS PRO LEU PHE PHE ASP LEU ALA LEU ASN HIS VAL ALA SEQRES 8 A 106 PHE PRO PRO LEU GLU ASP LYS LEU ALA ALA ALA THR LYS SEQRES 9 A 106 SER GLY SEQRES 1 B 163 MET ALA SER GLY GLY SER GLY GLY VAL SER VAL PRO ALA SEQRES 2 B 163 LEU TRP SER GLU VAL ASN ARG TYR GLY GLN ASN GLY ASP SEQRES 3 B 163 PHE THR ARG ALA LEU LYS THR VAL ASN LYS ILE LEU GLN SEQRES 4 B 163 ILE ASN LYS ASP ASP VAL THR ALA LEU HIS CYS LYS VAL SEQRES 5 B 163 VAL CYS LEU ILE GLN ASN GLY SER PHE LYS GLU ALA LEU SEQRES 6 B 163 ASN VAL ILE ASN THR HIS THR LYS VAL LEU ALA ASN ASN SEQRES 7 B 163 SER LEU SER PHE GLU LYS ALA TYR CYS GLU TYR ARG LEU SEQRES 8 B 163 ASN ARG ILE GLU ASN ALA LEU LYS THR ILE GLU SER ALA SEQRES 9 B 163 ASN GLN GLN THR ASP LYS LEU LYS GLU LEU TYR GLY GLN SEQRES 10 B 163 VAL LEU TYR ARG LEU GLU ARG TYR ASP GLU CYS LEU ALA SEQRES 11 B 163 VAL TYR ARG ASP LEU VAL ARG ASN SER GLN ASP ASP TYR SEQRES 12 B 163 ASP GLU GLU ARG LYS THR ASN LEU SER ALA VAL VAL ALA SEQRES 13 B 163 ALA GLN SER ASN TRP GLU LYS HET ACT A 701 4 HET GOL A 702 6 HET SO4 B 201 5 HET SO4 B 202 5 HET NA B 203 1 HET ACT B 204 4 HET GOL B 205 6 HET GOL B 206 6 HET GOL B 207 6 HET GOL B 208 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 NA NA 1+ FORMUL 13 HOH *226(H2 O) HELIX 1 AA1 ASP A 592 VAL A 598 5 7 HELIX 2 AA2 LEU A 603 ALA A 608 1 6 HELIX 3 AA3 SER B 10 ASN B 24 1 15 HELIX 4 AA4 ASP B 26 ASN B 41 1 16 HELIX 5 AA5 ASP B 44 ASN B 58 1 15 HELIX 6 AA6 SER B 60 THR B 70 1 11 HELIX 7 AA7 LEU B 80 LEU B 91 1 12 HELIX 8 AA8 ARG B 93 SER B 103 1 11 HELIX 9 AA9 THR B 108 LEU B 122 1 15 HELIX 10 AB1 ARG B 124 SER B 139 1 16 HELIX 11 AB2 TYR B 143 ASN B 160 1 18 LINK OE2 GLU B 113 NA NA B 203 1555 1555 2.83 LINK OH TYR B 132 NA NA B 203 1555 1555 2.59 SITE 1 AC1 4 LYS A 606 ASP B 44 VAL B 45 THR B 46 SITE 1 AC2 6 PHE A 591 ASP A 592 LEU A 593 ASN A 596 SITE 2 AC2 6 ASN B 24 HOH B 319 SITE 1 AC3 10 ASN B 77 ASN B 78 SER B 79 LEU B 80 SITE 2 AC3 10 SER B 81 ALA B 104 ASN B 105 GLN B 106 SITE 3 AC3 10 HOH B 316 HOH B 394 SITE 1 AC4 7 SER B 60 PHE B 61 LYS B 62 GLU B 63 SITE 2 AC4 7 HOH B 305 HOH B 374 HOH B 488 SITE 1 AC5 5 LEU A 593 GLU B 113 GLN B 117 TYR B 132 SITE 2 AC5 5 ASN B 150 SITE 1 AC6 7 LEU A 595 HOH A 806 ASN B 24 GLY B 25 SITE 2 AC6 7 GLN B 57 HOH B 396 HOH B 457 SITE 1 AC7 2 ILE B 101 GLN B 107 SITE 1 AC8 8 ALA A 599 PHE A 600 HOH A 803 HOH A 807 SITE 2 AC8 8 GLY B 22 GLN B 23 PHE B 27 HOH B 349 SITE 1 AC9 5 ARG B 29 LYS B 32 ARG B 121 HOH B 303 SITE 2 AC9 5 HOH B 346 SITE 1 AD1 7 SER B 16 ASN B 19 ARG B 20 LYS B 148 SITE 2 AD1 7 THR B 149 SER B 152 HOH B 368 CRYST1 120.598 120.598 80.001 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008292 0.004787 0.000000 0.00000 SCALE2 0.000000 0.009575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012500 0.00000