PDB Short entry for 5WVD HEADER TRANSFERASE 24-DEC-16 5WVD TITLE STRUCTURE OF MNK1 IN COMPLEX WITH DS12881479 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE INTERACTING SERINE/THREONINE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 37-341; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MKNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, KINASE INHIBITOR, INACTIVE CONFORMATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MATSUI,H.HANZAWA REVDAT 3 22-NOV-23 5WVD 1 REMARK REVDAT 2 14-MAR-18 5WVD 1 JRNL REVDAT 1 03-JAN-18 5WVD 0 JRNL AUTH Y.MATSUI,I.YASUMATSU,K.I.YOSHIDA,S.IIMURA,Y.IKENO,T.NAWANO, JRNL AUTH 2 H.FUKANO,O.UBUKATA,H.HANZAWA,F.TANZAWA,T.ISOYAMA JRNL TITL A NOVEL INHIBITOR STABILIZES THE INACTIVE CONFORMATION OF JRNL TITL 2 MAPK-INTERACTING KINASE 1. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 156 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29497019 JRNL DOI 10.1107/S2053230X18002108 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07000 REMARK 3 B22 (A**2) : 2.07000 REMARK 3 B33 (A**2) : -4.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.315 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3750 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5051 ; 1.534 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 5.996 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;36.219 ;24.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;17.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2842 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 43 A 56 3 REMARK 3 1 B 43 B 56 3 REMARK 3 2 A 58 A 127 3 REMARK 3 2 B 58 B 127 3 REMARK 3 3 A 148 A 258 3 REMARK 3 3 B 148 B 258 3 REMARK 3 4 A 308 A 332 5 REMARK 3 4 B 308 B 332 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 100 ; 0.12 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 785 ; 0.16 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 680 ; 2.46 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 100 ; 2.35 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 785 ; 2.28 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2059 -28.3105 25.0015 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.0842 REMARK 3 T33: 0.1991 T12: -0.0290 REMARK 3 T13: -0.0200 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.2606 L22: 2.8476 REMARK 3 L33: 5.2154 L12: -1.6935 REMARK 3 L13: 2.1809 L23: -2.3220 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: -0.1731 S13: 0.1961 REMARK 3 S21: -0.0103 S22: -0.0083 S23: 0.0947 REMARK 3 S31: -0.1635 S32: -0.2221 S33: 0.0838 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9203 -50.5448 54.1284 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.5185 REMARK 3 T33: 0.3510 T12: -0.1869 REMARK 3 T13: -0.0597 T23: 0.1054 REMARK 3 L TENSOR REMARK 3 L11: 3.8830 L22: 1.1869 REMARK 3 L33: 6.5927 L12: 0.5633 REMARK 3 L13: -1.9448 L23: -0.4596 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: -0.3449 S13: -0.1048 REMARK 3 S21: -0.0655 S22: 0.0765 S23: 0.4382 REMARK 3 S31: 0.5846 S32: -1.0652 S33: 0.0347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15900 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HW6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, AMMONIUM REMARK 280 SULFATE, CITRATE BUFFER (PH 6.2), MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.21850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.31750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.31750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.82775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.31750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.31750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.60925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.31750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.31750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.82775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.31750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.31750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.60925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.21850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 32 REMARK 465 PRO A 33 REMARK 465 LEU A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 THR A 37 REMARK 465 ASP A 38 REMARK 465 SER A 39 REMARK 465 LEU A 40 REMARK 465 MET A 198 REMARK 465 LYS A 199 REMARK 465 LEU A 200 REMARK 465 ASN A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 CYS A 204 REMARK 465 THR A 205 REMARK 465 PRO A 206 REMARK 465 ILE A 207 REMARK 465 THR A 208 REMARK 465 THR A 209 REMARK 465 PRO A 210 REMARK 465 GLU A 211 REMARK 465 LEU A 212 REMARK 465 THR A 213 REMARK 465 THR A 214 REMARK 465 PRO A 215 REMARK 465 CYS A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 ALA A 219 REMARK 465 GLU A 220 REMARK 465 VAL A 261 REMARK 465 GLY A 262 REMARK 465 HIS A 263 REMARK 465 CYS A 264 REMARK 465 GLY A 265 REMARK 465 ALA A 266 REMARK 465 ASP A 267 REMARK 465 CYS A 268 REMARK 465 GLY A 269 REMARK 465 TRP A 270 REMARK 465 ASP A 271 REMARK 465 ARG A 272 REMARK 465 GLY A 273 REMARK 465 GLU A 274 REMARK 465 VAL A 275 REMARK 465 CYS A 276 REMARK 465 ARG A 277 REMARK 465 VAL A 278 REMARK 465 CYS A 279 REMARK 465 GLN A 280 REMARK 465 ASN A 281 REMARK 465 LYS A 282 REMARK 465 LEU A 283 REMARK 465 PHE A 284 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 ILE A 287 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 GLY A 290 REMARK 465 GLY A 335 REMARK 465 GLN A 336 REMARK 465 ALA A 337 REMARK 465 PRO A 338 REMARK 465 GLU A 339 REMARK 465 LYS A 340 REMARK 465 GLY A 341 REMARK 465 GLY B 32 REMARK 465 PRO B 33 REMARK 465 LEU B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 THR B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 LEU B 40 REMARK 465 LYS B 138 REMARK 465 GLN B 139 REMARK 465 LYS B 140 REMARK 465 HIS B 141 REMARK 465 PHE B 142 REMARK 465 ASN B 143 REMARK 465 GLU B 144 REMARK 465 ARG B 145 REMARK 465 GLU B 146 REMARK 465 GLU B 182 REMARK 465 LYS B 183 REMARK 465 LYS B 199 REMARK 465 LEU B 200 REMARK 465 ASN B 201 REMARK 465 ASN B 202 REMARK 465 SER B 203 REMARK 465 CYS B 204 REMARK 465 THR B 205 REMARK 465 PRO B 206 REMARK 465 ILE B 207 REMARK 465 THR B 208 REMARK 465 THR B 209 REMARK 465 PRO B 210 REMARK 465 GLU B 211 REMARK 465 LEU B 212 REMARK 465 THR B 213 REMARK 465 THR B 214 REMARK 465 PRO B 215 REMARK 465 CYS B 216 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 ALA B 219 REMARK 465 PRO B 259 REMARK 465 PHE B 260 REMARK 465 VAL B 261 REMARK 465 GLY B 262 REMARK 465 HIS B 263 REMARK 465 CYS B 264 REMARK 465 GLY B 265 REMARK 465 ALA B 266 REMARK 465 ASP B 267 REMARK 465 CYS B 268 REMARK 465 GLY B 269 REMARK 465 TRP B 270 REMARK 465 ASP B 271 REMARK 465 ARG B 272 REMARK 465 GLY B 273 REMARK 465 GLU B 274 REMARK 465 VAL B 275 REMARK 465 CYS B 276 REMARK 465 ARG B 277 REMARK 465 VAL B 278 REMARK 465 CYS B 279 REMARK 465 GLN B 280 REMARK 465 ASN B 281 REMARK 465 LYS B 282 REMARK 465 LEU B 283 REMARK 465 PHE B 284 REMARK 465 GLU B 285 REMARK 465 SER B 286 REMARK 465 ILE B 287 REMARK 465 GLN B 288 REMARK 465 GLU B 289 REMARK 465 GLY B 290 REMARK 465 LYS B 291 REMARK 465 TYR B 292 REMARK 465 GLU B 293 REMARK 465 PHE B 294 REMARK 465 PRO B 295 REMARK 465 ASP B 296 REMARK 465 LYS B 297 REMARK 465 ASP B 298 REMARK 465 TRP B 299 REMARK 465 ALA B 300 REMARK 465 HIS B 301 REMARK 465 ILE B 302 REMARK 465 SER B 303 REMARK 465 SER B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 LYS B 307 REMARK 465 GLN B 334 REMARK 465 GLY B 335 REMARK 465 GLN B 336 REMARK 465 ALA B 337 REMARK 465 PRO B 338 REMARK 465 GLU B 339 REMARK 465 LYS B 340 REMARK 465 GLY B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 186 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 138 -54.53 -135.55 REMARK 500 LYS A 140 -66.80 65.90 REMARK 500 ARG A 169 -15.50 72.15 REMARK 500 ASP A 170 59.46 -143.22 REMARK 500 SER A 196 -158.07 -96.28 REMARK 500 GLU A 228 95.49 -67.10 REMARK 500 PHE A 230 72.59 59.78 REMARK 500 ARG B 169 -16.32 71.59 REMARK 500 GLU B 228 94.52 -67.33 REMARK 500 PHE B 230 70.36 60.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7UX A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7UX B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WVJ RELATED DB: PDB REMARK 900 RELATED ID: 5WVL RELATED DB: PDB DBREF 5WVD A 37 341 UNP B5BUJ6 B5BUJ6_HUMAN 37 341 DBREF 5WVD B 37 341 UNP B5BUJ6 B5BUJ6_HUMAN 37 341 SEQADV 5WVD GLY A 32 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD PRO A 33 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD LEU A 34 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD GLY A 35 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD SER A 36 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD GLY B 32 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD PRO B 33 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD LEU B 34 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD GLY B 35 UNP B5BUJ6 EXPRESSION TAG SEQADV 5WVD SER B 36 UNP B5BUJ6 EXPRESSION TAG SEQRES 1 A 310 GLY PRO LEU GLY SER THR ASP SER LEU PRO GLY LYS PHE SEQRES 2 A 310 GLU ASP MET TYR LYS LEU THR SER GLU LEU LEU GLY GLU SEQRES 3 A 310 GLY ALA TYR ALA LYS VAL GLN GLY ALA VAL SER LEU GLN SEQRES 4 A 310 ASN GLY LYS GLU TYR ALA VAL LYS ILE ILE GLU LYS GLN SEQRES 5 A 310 ALA GLY HIS SER ARG SER ARG VAL PHE ARG GLU VAL GLU SEQRES 6 A 310 THR LEU TYR GLN CYS GLN GLY ASN LYS ASN ILE LEU GLU SEQRES 7 A 310 LEU ILE GLU PHE PHE GLU ASP ASP THR ARG PHE TYR LEU SEQRES 8 A 310 VAL PHE GLU LYS LEU GLN GLY GLY SER ILE LEU ALA HIS SEQRES 9 A 310 ILE GLN LYS GLN LYS HIS PHE ASN GLU ARG GLU ALA SER SEQRES 10 A 310 ARG VAL VAL ARG ASP VAL ALA ALA ALA LEU ASP PHE LEU SEQRES 11 A 310 HIS THR LYS GLY ILE ALA HIS ARG ASP LEU LYS PRO GLU SEQRES 12 A 310 ASN ILE LEU CYS GLU SER PRO GLU LYS VAL SER PRO VAL SEQRES 13 A 310 LYS ILE CYS ASP PHE ASP LEU GLY SER GLY MET LYS LEU SEQRES 14 A 310 ASN ASN SER CYS THR PRO ILE THR THR PRO GLU LEU THR SEQRES 15 A 310 THR PRO CYS GLY SER ALA GLU TYR MET ALA PRO GLU VAL SEQRES 16 A 310 VAL GLU VAL PHE THR ASP GLN ALA THR PHE TYR ASP LYS SEQRES 17 A 310 ARG CYS ASP LEU TRP SER LEU GLY VAL VAL LEU TYR ILE SEQRES 18 A 310 MET LEU SER GLY TYR PRO PRO PHE VAL GLY HIS CYS GLY SEQRES 19 A 310 ALA ASP CYS GLY TRP ASP ARG GLY GLU VAL CYS ARG VAL SEQRES 20 A 310 CYS GLN ASN LYS LEU PHE GLU SER ILE GLN GLU GLY LYS SEQRES 21 A 310 TYR GLU PHE PRO ASP LYS ASP TRP ALA HIS ILE SER SER SEQRES 22 A 310 GLU ALA LYS ASP LEU ILE SER LYS LEU LEU VAL ARG ASP SEQRES 23 A 310 ALA LYS GLN ARG LEU SER ALA ALA GLN VAL LEU GLN HIS SEQRES 24 A 310 PRO TRP VAL GLN GLY GLN ALA PRO GLU LYS GLY SEQRES 1 B 310 GLY PRO LEU GLY SER THR ASP SER LEU PRO GLY LYS PHE SEQRES 2 B 310 GLU ASP MET TYR LYS LEU THR SER GLU LEU LEU GLY GLU SEQRES 3 B 310 GLY ALA TYR ALA LYS VAL GLN GLY ALA VAL SER LEU GLN SEQRES 4 B 310 ASN GLY LYS GLU TYR ALA VAL LYS ILE ILE GLU LYS GLN SEQRES 5 B 310 ALA GLY HIS SER ARG SER ARG VAL PHE ARG GLU VAL GLU SEQRES 6 B 310 THR LEU TYR GLN CYS GLN GLY ASN LYS ASN ILE LEU GLU SEQRES 7 B 310 LEU ILE GLU PHE PHE GLU ASP ASP THR ARG PHE TYR LEU SEQRES 8 B 310 VAL PHE GLU LYS LEU GLN GLY GLY SER ILE LEU ALA HIS SEQRES 9 B 310 ILE GLN LYS GLN LYS HIS PHE ASN GLU ARG GLU ALA SER SEQRES 10 B 310 ARG VAL VAL ARG ASP VAL ALA ALA ALA LEU ASP PHE LEU SEQRES 11 B 310 HIS THR LYS GLY ILE ALA HIS ARG ASP LEU LYS PRO GLU SEQRES 12 B 310 ASN ILE LEU CYS GLU SER PRO GLU LYS VAL SER PRO VAL SEQRES 13 B 310 LYS ILE CYS ASP PHE ASP LEU GLY SER GLY MET LYS LEU SEQRES 14 B 310 ASN ASN SER CYS THR PRO ILE THR THR PRO GLU LEU THR SEQRES 15 B 310 THR PRO CYS GLY SER ALA GLU TYR MET ALA PRO GLU VAL SEQRES 16 B 310 VAL GLU VAL PHE THR ASP GLN ALA THR PHE TYR ASP LYS SEQRES 17 B 310 ARG CYS ASP LEU TRP SER LEU GLY VAL VAL LEU TYR ILE SEQRES 18 B 310 MET LEU SER GLY TYR PRO PRO PHE VAL GLY HIS CYS GLY SEQRES 19 B 310 ALA ASP CYS GLY TRP ASP ARG GLY GLU VAL CYS ARG VAL SEQRES 20 B 310 CYS GLN ASN LYS LEU PHE GLU SER ILE GLN GLU GLY LYS SEQRES 21 B 310 TYR GLU PHE PRO ASP LYS ASP TRP ALA HIS ILE SER SER SEQRES 22 B 310 GLU ALA LYS ASP LEU ILE SER LYS LEU LEU VAL ARG ASP SEQRES 23 B 310 ALA LYS GLN ARG LEU SER ALA ALA GLN VAL LEU GLN HIS SEQRES 24 B 310 PRO TRP VAL GLN GLY GLN ALA PRO GLU LYS GLY HET SO4 A 401 5 HET 7UX A 402 21 HET 7UX B 401 21 HETNAM SO4 SULFATE ION HETNAM 7UX 1-METHYL-N-(5-PHENYL-1,3-THIAZOL-2-YL)PIPERIDINE-4- HETNAM 2 7UX CARBOXAMIDE FORMUL 3 SO4 O4 S 2- FORMUL 4 7UX 2(C16 H19 N3 O S) HELIX 1 AA1 LYS A 43 ASP A 46 5 4 HELIX 2 AA2 HIS A 86 TYR A 99 1 14 HELIX 3 AA3 SER A 131 LYS A 140 1 10 HELIX 4 AA4 ASN A 143 LYS A 164 1 22 HELIX 5 AA5 LYS A 172 GLU A 174 5 3 HELIX 6 AA6 THR A 235 GLY A 256 1 22 HELIX 7 AA7 PRO A 295 ALA A 300 1 6 HELIX 8 AA8 SER A 303 LEU A 314 1 12 HELIX 9 AA9 SER A 323 GLN A 329 1 7 HELIX 10 AB1 LYS B 43 ASP B 46 5 4 HELIX 11 AB2 HIS B 86 TYR B 99 1 14 HELIX 12 AB3 SER B 131 GLN B 137 1 7 HELIX 13 AB4 SER B 148 LYS B 164 1 17 HELIX 14 AB5 LYS B 172 GLU B 174 5 3 HELIX 15 AB6 THR B 235 GLY B 256 1 22 HELIX 16 AB7 SER B 323 GLN B 329 1 7 SHEET 1 AA1 5 TYR A 48 GLU A 57 0 SHEET 2 AA1 5 ALA A 61 SER A 68 -1 O VAL A 63 N GLY A 56 SHEET 3 AA1 5 GLU A 74 GLU A 81 -1 O TYR A 75 N ALA A 66 SHEET 4 AA1 5 ARG A 119 GLU A 125 -1 O LEU A 122 N LYS A 78 SHEET 5 AA1 5 LEU A 110 GLU A 115 -1 N ILE A 111 O VAL A 123 SHEET 1 AA2 2 ILE A 176 CYS A 178 0 SHEET 2 AA2 2 VAL A 187 ILE A 189 -1 O LYS A 188 N LEU A 177 SHEET 1 AA3 5 TYR B 48 GLY B 56 0 SHEET 2 AA3 5 ALA B 61 SER B 68 -1 O VAL B 67 N LYS B 49 SHEET 3 AA3 5 GLU B 74 GLU B 81 -1 O TYR B 75 N ALA B 66 SHEET 4 AA3 5 ARG B 119 GLU B 125 -1 O PHE B 120 N ILE B 80 SHEET 5 AA3 5 LEU B 110 GLU B 115 -1 N ILE B 111 O VAL B 123 SHEET 1 AA4 2 ILE B 176 CYS B 178 0 SHEET 2 AA4 2 VAL B 187 ILE B 189 -1 O LYS B 188 N LEU B 177 SITE 1 AC1 9 HIS A 86 SER A 89 ARG A 90 ARG A 93 SITE 2 AC1 9 GLU A 228 HIS B 86 SER B 89 ARG B 90 SITE 3 AC1 9 ARG B 93 SITE 1 AC2 12 GLU A 53 LEU A 55 ALA A 76 PHE A 124 SITE 2 AC2 12 GLU A 125 LYS A 126 LEU A 127 GLN A 128 SITE 3 AC2 12 GLY A 129 LEU A 177 ASP A 191 PHE A 192 SITE 1 AC3 6 PHE B 124 LEU B 127 GLN B 128 GLY B 129 SITE 2 AC3 6 LEU B 177 ASP B 191 CRYST1 92.635 92.635 174.437 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005733 0.00000