PDB Short entry for 5WXH HEADER HYDROLASE 07-JAN-17 5WXH TITLE CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO H3K4ME3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: 140 KDA TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR,TBP- COMPND 5 ASSOCIATED FACTOR 3,TRANSCRIPTION INITIATION FACTOR TFIID 140 KDA COMPND 6 SUBUNIT,TAFII140; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3K4ME3; COMPND 10 CHAIN: D, P; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMOH10; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED H3K4ME3 PEPTIDE KEYWDS TAF3, HISTONE H3, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ZHAO,J.HUANG,H.LI REVDAT 3 13-SEP-17 5WXH 1 JRNL REVDAT 2 30-AUG-17 5WXH 1 REMARK REVDAT 1 16-AUG-17 5WXH 0 JRNL AUTH S.ZHAO,M.YANG,W.ZHOU,B.ZHANG,Z.CHENG,J.HUANG,M.ZHANG,Z.WANG, JRNL AUTH 2 R.WANG,Z.CHEN,J.ZHU,H.LI JRNL TITL KINETIC AND HIGH-THROUGHPUT PROFILING OF EPIGENETIC JRNL TITL 2 INTERACTIONS BY 3D-CARBENE CHIP-BASED SURFACE PLASMON JRNL TITL 3 RESONANCE IMAGING TECHNOLOGY JRNL REF PROC. NATL. ACAD. SCI. V. 114 E7245 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28808021 JRNL DOI 10.1073/PNAS.1704155114 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 31153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3111 - 2.8846 0.99 2814 138 0.1360 0.1590 REMARK 3 2 2.8846 - 2.2897 0.98 2800 142 0.1607 0.1806 REMARK 3 3 2.2897 - 2.0003 0.97 2744 138 0.1485 0.1765 REMARK 3 4 2.0003 - 1.8174 0.97 2774 125 0.1536 0.1762 REMARK 3 5 1.8174 - 1.6871 0.95 2700 128 0.1517 0.1633 REMARK 3 6 1.6871 - 1.5877 0.95 2704 131 0.1601 0.1827 REMARK 3 7 1.5877 - 1.5081 0.95 2707 144 0.1559 0.1997 REMARK 3 8 1.5081 - 1.4425 0.94 2660 140 0.1758 0.1819 REMARK 3 9 1.4425 - 1.3870 0.93 2637 146 0.1909 0.2026 REMARK 3 10 1.3870 - 1.3391 0.93 2638 160 0.2073 0.2108 REMARK 3 11 1.3391 - 1.2972 0.88 2466 117 0.2191 0.2163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1137 REMARK 3 ANGLE : 0.860 1553 REMARK 3 CHIRALITY : 0.087 147 REMARK 3 PLANARITY : 0.007 201 REMARK 3 DIHEDRAL : 22.360 410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 855 THROUGH 868 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1435 7.3384 24.1638 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1845 REMARK 3 T33: 0.1310 T12: -0.0090 REMARK 3 T13: -0.0119 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.1437 L22: 0.0779 REMARK 3 L33: 0.0317 L12: -0.1200 REMARK 3 L13: 0.0137 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.1197 S13: 0.0179 REMARK 3 S21: -0.0071 S22: -0.0570 S23: 0.0113 REMARK 3 S31: -0.0234 S32: 0.0292 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 869 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7923 1.9451 34.4159 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1613 REMARK 3 T33: 0.1458 T12: -0.0077 REMARK 3 T13: -0.0005 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.3679 L22: 0.2447 REMARK 3 L33: 0.3794 L12: -0.1601 REMARK 3 L13: -0.3202 L23: 0.2761 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: 0.0686 S13: -0.1493 REMARK 3 S21: 0.0160 S22: -0.0102 S23: 0.0954 REMARK 3 S31: 0.4048 S32: -0.0290 S33: -0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 897 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6087 9.7540 39.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1544 REMARK 3 T33: 0.1268 T12: -0.0033 REMARK 3 T13: 0.0054 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.0877 L22: 0.0547 REMARK 3 L33: 0.1801 L12: -0.0729 REMARK 3 L13: -0.0837 L23: 0.0602 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0488 S13: 0.0458 REMARK 3 S21: -0.0561 S22: 0.0168 S23: 0.1022 REMARK 3 S31: -0.0848 S32: 0.0144 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 898 THROUGH 911 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2752 12.0635 47.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1840 REMARK 3 T33: 0.1707 T12: -0.0065 REMARK 3 T13: 0.0231 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0657 L22: 0.0373 REMARK 3 L33: 0.1084 L12: 0.0176 REMARK 3 L13: -0.0666 L23: -0.0617 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.1619 S13: 0.1008 REMARK 3 S21: 0.1456 S22: 0.0595 S23: 0.0198 REMARK 3 S31: -0.1485 S32: 0.1482 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 912 THROUGH 917 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4516 16.4537 41.2615 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.2369 REMARK 3 T33: 0.3119 T12: -0.0438 REMARK 3 T13: -0.0121 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.0199 L22: 0.0150 REMARK 3 L33: 0.0017 L12: -0.0130 REMARK 3 L13: -0.0030 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.2312 S12: 0.0355 S13: -0.1109 REMARK 3 S21: -0.1248 S22: 0.0691 S23: -0.4088 REMARK 3 S31: -0.1220 S32: 0.0942 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 855 THROUGH 868 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7162 6.6122 25.0173 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1534 REMARK 3 T33: 0.1328 T12: -0.0029 REMARK 3 T13: -0.0070 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.2167 L22: 0.1779 REMARK 3 L33: 0.0792 L12: -0.2011 REMARK 3 L13: -0.1009 L23: 0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.1258 S13: -0.0335 REMARK 3 S21: 0.0745 S22: -0.0819 S23: 0.0769 REMARK 3 S31: 0.0603 S32: -0.1045 S33: -0.0058 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 869 THROUGH 902 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5451 -7.1825 19.7952 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.1308 REMARK 3 T33: 0.1917 T12: -0.0133 REMARK 3 T13: 0.0363 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.7761 L22: 1.3139 REMARK 3 L33: 0.8041 L12: -0.7382 REMARK 3 L13: -0.1809 L23: 0.6646 REMARK 3 S TENSOR REMARK 3 S11: -0.0767 S12: 0.0796 S13: -0.1816 REMARK 3 S21: 0.1689 S22: -0.1665 S23: 0.3906 REMARK 3 S31: 0.2709 S32: -0.1180 S33: -0.2206 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 903 THROUGH 914 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9179 -8.7100 8.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2355 REMARK 3 T33: 0.2830 T12: -0.0123 REMARK 3 T13: -0.0186 T23: -0.0936 REMARK 3 L TENSOR REMARK 3 L11: 0.5126 L22: 0.7675 REMARK 3 L33: 0.9058 L12: 0.1805 REMARK 3 L13: -0.4210 L23: -0.6100 REMARK 3 S TENSOR REMARK 3 S11: -0.1324 S12: -0.0391 S13: 0.1201 REMARK 3 S21: -0.5188 S22: -0.1581 S23: 0.2214 REMARK 3 S31: 0.0021 S32: -0.2833 S33: -0.1973 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0620 -6.0782 18.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1699 REMARK 3 T33: 0.2065 T12: 0.0349 REMARK 3 T13: -0.0109 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0389 L22: 0.0315 REMARK 3 L33: 0.0232 L12: -0.0123 REMARK 3 L13: -0.0231 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.1621 S13: -0.1542 REMARK 3 S21: 0.1193 S22: 0.1456 S23: -0.2761 REMARK 3 S31: 0.1599 S32: 0.2779 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5720 7.2100 39.6433 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.2494 REMARK 3 T33: 0.2170 T12: -0.0274 REMARK 3 T13: -0.0450 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0654 L22: 0.0232 REMARK 3 L33: 0.0356 L12: -0.0387 REMARK 3 L13: 0.0171 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.1312 S12: -0.0049 S13: -0.0870 REMARK 3 S21: -0.0103 S22: -0.0077 S23: 0.2385 REMARK 3 S31: 0.1903 S32: -0.4096 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL-2000, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.297 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03 M MAGNESIUM CHLORIDE, 0.03 M REMARK 280 CALCIUM CHLORIDE, 0.1 M MES, 0.1 M IMIDAZOLE, PH6.5, 15% PEGMME REMARK 280 550, 15% PEG 20K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 915 REMARK 465 ASN C 916 REMARK 465 LYS C 917 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 889 O HOH A 1101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 887 -68.50 -103.66 REMARK 500 ASP C 887 -70.85 -101.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 870 SG REMARK 620 2 CYS A 873 SG 114.7 REMARK 620 3 HIS A 893 ND1 98.8 97.0 REMARK 620 4 CYS A 896 SG 115.0 113.9 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 885 SG REMARK 620 2 CYS A 888 SG 108.4 REMARK 620 3 CYS A 911 SG 111.3 113.5 REMARK 620 4 CYS A 914 SG 107.9 108.2 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 870 SG REMARK 620 2 CYS C 873 SG 115.3 REMARK 620 3 HIS C 893 ND1 98.4 96.2 REMARK 620 4 CYS C 896 SG 113.1 113.8 118.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 885 SG REMARK 620 2 CYS C 888 SG 109.6 REMARK 620 3 CYS C 911 SG 111.3 108.2 REMARK 620 4 CYS C 914 SG 106.9 110.0 110.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues M3L D 4 through REMARK 800 GLN D 5 bound to THR D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues M3L P 4 through REMARK 800 GLN P 5 bound to THR P 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WXG RELATED DB: PDB DBREF 5WXH A 855 917 UNP Q5VWG9 TAF3_HUMAN 853 915 DBREF 5WXH C 855 917 UNP Q5VWG9 TAF3_HUMAN 853 915 DBREF 5WXH D 1 7 PDB 5WXH 5WXH 1 7 DBREF 5WXH P 1 7 PDB 5WXH 5WXH 1 7 SEQADV 5WXH MET A 856 UNP Q5VWG9 THR 854 ACETYLATION SEQADV 5WXH MET C 856 UNP Q5VWG9 THR 854 ACETYLATION SEQRES 1 A 63 SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN ILE SEQRES 2 A 63 TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SER SEQRES 3 A 63 PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR HIS SEQRES 4 A 63 TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU GLU SEQRES 5 A 63 MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 C 63 SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN ILE SEQRES 2 C 63 TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SER SEQRES 3 C 63 PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR HIS SEQRES 4 C 63 TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU GLU SEQRES 5 C 63 MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 D 7 ALA ARG THR M3L GLN THR ALA SEQRES 1 P 7 ALA ARG THR M3L GLN THR ALA HET M3L D 4 12 HET M3L P 4 12 HET ZN A1001 1 HET ZN A1002 1 HET ZN C1001 1 HET ZN C1002 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *183(H2 O) HELIX 1 AA1 PRO A 895 GLY A 898 5 4 HELIX 2 AA2 CYS A 911 ASN A 916 1 6 HELIX 3 AA3 PRO C 895 GLY C 898 5 4 SHEET 1 AA1 2 VAL A 858 ARG A 860 0 SHEET 2 AA1 2 GLN A 866 TRP A 868 -1 O ILE A 867 N ILE A 859 SHEET 1 AA2 3 TRP A 891 HIS A 893 0 SHEET 2 AA2 3 MET A 882 GLY A 884 -1 N ILE A 883 O TYR A 892 SHEET 3 AA2 3 ARG P 2 M3L P 4 -1 O ARG P 2 N GLY A 884 SHEET 1 AA3 2 VAL C 858 ARG C 860 0 SHEET 2 AA3 2 GLN C 866 TRP C 868 -1 O ILE C 867 N ILE C 859 SHEET 1 AA4 3 TRP C 891 HIS C 893 0 SHEET 2 AA4 3 MET C 882 GLY C 884 -1 N ILE C 883 O TYR C 892 SHEET 3 AA4 3 THR D 3 M3L D 4 -1 O M3L D 4 N MET C 882 LINK SG CYS A 870 ZN ZN A1002 1555 1555 2.34 LINK SG CYS A 873 ZN ZN A1002 1555 1555 2.29 LINK SG CYS A 885 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 888 ZN ZN A1001 1555 1555 2.31 LINK ND1 HIS A 893 ZN ZN A1002 1555 1555 2.11 LINK SG CYS A 896 ZN ZN A1002 1555 1555 2.26 LINK SG CYS A 911 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 914 ZN ZN A1001 1555 1555 2.33 LINK SG CYS C 870 ZN ZN C1002 1555 1555 2.38 LINK SG CYS C 873 ZN ZN C1002 1555 1555 2.31 LINK SG CYS C 885 ZN ZN C1001 1555 1555 2.36 LINK SG CYS C 888 ZN ZN C1001 1555 1555 2.28 LINK ND1 HIS C 893 ZN ZN C1002 1555 1555 2.10 LINK SG CYS C 896 ZN ZN C1002 1555 1555 2.27 LINK SG CYS C 911 ZN ZN C1001 1555 1555 2.35 LINK SG CYS C 914 ZN ZN C1001 1555 1555 2.23 LINK C THR D 3 N M3L D 4 1555 1555 1.33 LINK C M3L D 4 N GLN D 5 1555 1555 1.33 LINK C THR P 3 N M3L P 4 1555 1555 1.33 LINK C M3L P 4 N GLN P 5 1555 1555 1.33 SITE 1 AC1 4 CYS A 885 CYS A 888 CYS A 911 CYS A 914 SITE 1 AC2 4 CYS A 870 CYS A 873 HIS A 893 CYS A 896 SITE 1 AC3 4 CYS C 885 CYS C 888 CYS C 911 CYS C 914 SITE 1 AC4 4 CYS C 870 CYS C 873 HIS C 893 CYS C 896 SITE 1 AC5 11 TRP A 863 TRP C 868 ASP C 877 GLY C 879 SITE 2 AC5 11 PRO C 881 MET C 882 TRP C 891 THR D 3 SITE 3 AC5 11 THR D 6 ALA D 7 HOH D 107 SITE 1 AC6 15 ASP A 877 GLY A 879 PRO A 881 MET A 882 SITE 2 AC6 15 TRP A 891 TRP C 863 ASP C 886 GLN C 908 SITE 3 AC6 15 PHE C 910 HOH C1148 THR P 3 THR P 6 SITE 4 AC6 15 ALA P 7 HOH P 101 HOH P 107 CRYST1 27.244 35.138 38.562 82.96 75.62 73.49 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036705 -0.010878 -0.008813 0.00000 SCALE2 0.000000 0.029683 -0.001666 0.00000 SCALE3 0.000000 0.000000 0.026813 0.00000