PDB Short entry for 5WY5 HEADER METAL BINDING PROTEIN 11-JAN-17 5WY5 TITLE CRYSTAL STRUCTURE OF MAGEG1 AND NSE1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MELANOMA-ASSOCIATED ANTIGEN G1; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 78-294; COMPND 5 SYNONYM: NON-SMC ELEMENT 3 HOMOLOG,HEPATOCELLULAR CARCINOMA- COMPND 6 ASSOCIATED PROTEIN 4,MAGE-G1 ANTIGEN, NON-STRUCTURAL MAINTENANCE OF COMPND 7 CHROMOSOMES ELEMENT 3 HOMOLOG; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 COMPND 12 HOMOLOG; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: UNP RESIDUES 9-246; COMPND 15 SYNONYM: NON-SMC ELEMENT 1 HOMOLOG; COMPND 16 EC: 6.3.2.-; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSMCE3, HCA4, MAGEG1, NDNL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: NSMCE1, HSPC333, HSPC337; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSFDUET KEYWDS E3 LIGASE, ZN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.YANG,J.GAO REVDAT 3 20-MAR-24 5WY5 1 REMARK REVDAT 2 04-OCT-17 5WY5 1 REMARK REVDAT 1 03-MAY-17 5WY5 0 SPRSDE 03-MAY-17 5WY5 3NW0 JRNL AUTH J.M.DOYLE,J.GAO,J.WANG,M.YANG,P.R.POTTS JRNL TITL MAGE-RING PROTEIN COMPLEXES COMPRISE A FAMILY OF E3 JRNL TITL 2 UBIQUITIN LIGASES. JRNL REF MOL.CELL V. 39 963 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20864041 JRNL DOI 10.1016/J.MOLCEL.2010.08.029 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 14235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3622 - 4.9927 0.98 3086 145 0.2118 0.2609 REMARK 3 2 4.9927 - 3.9651 0.97 2892 144 0.1704 0.2081 REMARK 3 3 3.9651 - 3.4646 0.96 2831 159 0.2159 0.2926 REMARK 3 4 3.4646 - 3.1481 0.93 2694 147 0.2804 0.3511 REMARK 3 5 3.1481 - 2.9226 0.70 2025 112 0.3422 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 79.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.25720 REMARK 3 B22 (A**2) : -2.40460 REMARK 3 B33 (A**2) : -14.07670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3554 REMARK 3 ANGLE : 1.326 4787 REMARK 3 CHIRALITY : 0.081 536 REMARK 3 PLANARITY : 0.008 609 REMARK 3 DIHEDRAL : 20.749 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:59) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3027 -14.8491 22.5704 REMARK 3 T TENSOR REMARK 3 T11: 0.5263 T22: 0.2915 REMARK 3 T33: 0.6502 T12: -0.1529 REMARK 3 T13: -0.1547 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 8.3464 L22: 0.2461 REMARK 3 L33: 3.3406 L12: -1.0144 REMARK 3 L13: -3.0924 L23: 1.2487 REMARK 3 S TENSOR REMARK 3 S11: 1.0559 S12: -0.5660 S13: 2.0733 REMARK 3 S21: 0.3078 S22: -0.6483 S23: -0.3942 REMARK 3 S31: -0.8557 S32: 0.1759 S33: -0.2051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 60:89) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5628 -27.5731 20.2103 REMARK 3 T TENSOR REMARK 3 T11: 0.4873 T22: 0.4092 REMARK 3 T33: 0.3712 T12: -0.1519 REMARK 3 T13: 0.0257 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.3783 L22: 1.4633 REMARK 3 L33: 2.8038 L12: -1.6904 REMARK 3 L13: -1.3850 L23: 1.3913 REMARK 3 S TENSOR REMARK 3 S11: -0.3952 S12: -0.1361 S13: -0.4215 REMARK 3 S21: 0.4255 S22: 0.1216 S23: 0.0603 REMARK 3 S31: 0.8068 S32: 0.4496 S33: 0.1779 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 90:97) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2395 -31.3754 11.5150 REMARK 3 T TENSOR REMARK 3 T11: 1.2047 T22: 0.7789 REMARK 3 T33: 0.9396 T12: 0.1304 REMARK 3 T13: -0.1153 T23: 0.1045 REMARK 3 L TENSOR REMARK 3 L11: 2.2290 L22: 2.0575 REMARK 3 L33: 2.0453 L12: -0.0970 REMARK 3 L13: 2.7570 L23: -1.8410 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: 0.6925 S13: -1.0339 REMARK 3 S21: 0.6541 S22: 0.8483 S23: 1.1766 REMARK 3 S31: 0.1136 S32: 2.1827 S33: -0.1719 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 98:200) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4901 -35.3966 1.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.1596 REMARK 3 T33: 0.2652 T12: -0.0957 REMARK 3 T13: -0.0038 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 7.7867 L22: 3.3188 REMARK 3 L33: 9.5309 L12: -1.7642 REMARK 3 L13: 4.8297 L23: -0.7418 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.5216 S13: 0.0590 REMARK 3 S21: -0.4488 S22: -0.3336 S23: -0.1200 REMARK 3 S31: 0.6352 S32: -0.1062 S33: 0.3436 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 201:246) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5211 -45.8459 15.5532 REMARK 3 T TENSOR REMARK 3 T11: 0.7113 T22: 0.3921 REMARK 3 T33: 0.3948 T12: 0.3169 REMARK 3 T13: 0.0151 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 8.8961 L22: 3.0707 REMARK 3 L33: 2.9393 L12: -4.7783 REMARK 3 L13: 3.6889 L23: -1.6605 REMARK 3 S TENSOR REMARK 3 S11: 0.3215 S12: 0.5109 S13: -0.3236 REMARK 3 S21: -0.7391 S22: -0.5676 S23: 0.0160 REMARK 3 S31: 0.8655 S32: 0.7499 S33: 0.1658 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 78:158) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7799 -18.1673 15.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.3546 T22: 0.5803 REMARK 3 T33: 0.6825 T12: -0.1318 REMARK 3 T13: -0.0492 T23: 0.1226 REMARK 3 L TENSOR REMARK 3 L11: 2.6742 L22: 4.1713 REMARK 3 L33: 4.0399 L12: -0.6195 REMARK 3 L13: -0.3650 L23: -0.4485 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: 0.1443 S13: 0.7893 REMARK 3 S21: -0.1107 S22: 0.4276 S23: 0.6336 REMARK 3 S31: -0.1327 S32: -0.9271 S33: -0.2798 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 159:272) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9985 -1.1102 -3.1439 REMARK 3 T TENSOR REMARK 3 T11: 0.5495 T22: 0.8312 REMARK 3 T33: 0.3563 T12: -0.5448 REMARK 3 T13: 0.1032 T23: -0.1995 REMARK 3 L TENSOR REMARK 3 L11: 7.6289 L22: 5.7518 REMARK 3 L33: 2.4693 L12: 0.8926 REMARK 3 L13: -2.8804 L23: 1.3918 REMARK 3 S TENSOR REMARK 3 S11: -1.4200 S12: 2.1166 S13: -0.3339 REMARK 3 S21: -0.7953 S22: 0.9860 S23: -0.6372 REMARK 3 S31: 0.4494 S32: -0.5864 S33: 0.3136 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 273:278) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0461 -18.3365 0.7227 REMARK 3 T TENSOR REMARK 3 T11: 1.8706 T22: 0.6378 REMARK 3 T33: 2.8327 T12: -0.2436 REMARK 3 T13: -0.5376 T23: 0.3455 REMARK 3 L TENSOR REMARK 3 L11: 2.1926 L22: 0.5778 REMARK 3 L33: 3.2772 L12: 0.1809 REMARK 3 L13: -1.9778 L23: 1.7209 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -1.2498 S13: -3.6471 REMARK 3 S21: 2.5782 S22: -1.7239 S23: -1.1674 REMARK 3 S31: 3.2939 S32: -0.7858 S33: 0.8873 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 279:288) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7447 -16.3899 4.9383 REMARK 3 T TENSOR REMARK 3 T11: 1.2892 T22: 1.1110 REMARK 3 T33: 2.5421 T12: -0.2097 REMARK 3 T13: 0.6637 T23: 0.3152 REMARK 3 L TENSOR REMARK 3 L11: -2.5657 L22: 2.6220 REMARK 3 L33: 2.8170 L12: 1.8957 REMARK 3 L13: -1.8117 L23: 0.6942 REMARK 3 S TENSOR REMARK 3 S11: -0.5661 S12: 0.0589 S13: -2.0799 REMARK 3 S21: 0.7322 S22: 1.4509 S23: 0.4588 REMARK 3 S31: 1.0272 S32: 0.1250 S33: -0.8473 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 289:294) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8119 -11.2413 14.5888 REMARK 3 T TENSOR REMARK 3 T11: 1.4913 T22: 2.0074 REMARK 3 T33: 2.0087 T12: 0.1945 REMARK 3 T13: 0.6083 T23: -0.1879 REMARK 3 L TENSOR REMARK 3 L11: 4.3127 L22: 2.4576 REMARK 3 L33: 0.9600 L12: -0.5027 REMARK 3 L13: 2.1360 L23: -2.8682 REMARK 3 S TENSOR REMARK 3 S11: -1.5401 S12: -1.2868 S13: -0.1553 REMARK 3 S21: 0.2496 S22: -1.7439 S23: 0.7601 REMARK 3 S31: 0.7552 S32: -0.5105 S33: 1.8607 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-09; 29-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BSRF; SPRING-8 REMARK 200 BEAMLINE : 1W2B; BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 1.0 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 27.950 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22%(V/V) PEG 500, 0.1M SODIUM CITRATR REMARK 280 PH5.5, 2%(V/V) 1,1,1,3,3,3-HEXAFLUORO-2-PROPANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K, EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.62850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.62850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 162 REMARK 465 GLU B 163 REMARK 465 ASP B 164 REMARK 465 ALA B 165 REMARK 465 GLY B 169 REMARK 465 ASP B 170 REMARK 465 GLY B 206 REMARK 465 VAL B 207 REMARK 465 TYR B 208 REMARK 465 PRO B 209 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 LYS B 212 REMARK 465 HIS B 213 REMARK 465 LEU B 214 REMARK 465 ILE B 215 REMARK 465 PHE B 216 REMARK 465 GLY B 217 REMARK 465 ASP B 218 REMARK 465 ARG B 237 REMARK 465 ILE B 238 REMARK 465 PRO B 239 REMARK 465 HIS B 240 REMARK 465 THR B 241 REMARK 465 ASP B 242 REMARK 465 PRO B 243 REMARK 465 VAL B 244 REMARK 465 ASP B 245 REMARK 465 ASP A 45 REMARK 465 ARG A 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 183 CG CD1 CD2 REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 TRP B 278 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 278 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 231 O TRP B 250 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 104 -74.62 -49.84 REMARK 500 VAL B 115 -48.22 -139.66 REMARK 500 GLU B 159 -23.71 -176.68 REMARK 500 LYS B 189 52.32 -91.41 REMARK 500 GLU B 195 -81.25 -66.43 REMARK 500 LEU B 202 -60.49 -91.75 REMARK 500 ARG B 204 -79.82 -14.98 REMARK 500 LYS B 220 -78.74 -32.34 REMARK 500 GLN B 230 -81.96 -118.12 REMARK 500 ALA B 268 -70.74 -49.30 REMARK 500 ASN B 272 -172.60 76.32 REMARK 500 GLN B 273 -165.68 62.28 REMARK 500 ASP B 274 21.93 168.81 REMARK 500 TYR B 282 -59.89 -21.57 REMARK 500 ASP A 51 154.43 -43.48 REMARK 500 LEU A 53 -37.34 -36.45 REMARK 500 ASP A 79 9.39 -155.46 REMARK 500 ARG A 110 -70.12 -40.73 REMARK 500 LEU A 136 132.72 -22.93 REMARK 500 LYS A 139 131.24 88.00 REMARK 500 GLN A 178 -73.53 -35.36 REMARK 500 ASN A 192 -163.79 -65.03 REMARK 500 ILE A 193 -89.11 59.05 REMARK 500 CYS A 207 -148.91 -63.59 REMARK 500 CYS A 231 -15.78 93.39 REMARK 500 ASN A 232 13.20 54.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 405 DISTANCE = 7.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 CYS A 194 SG 136.7 REMARK 620 3 CYS A 215 SG 85.0 78.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 204 SG REMARK 620 2 CYS A 207 SG 148.8 REMARK 620 3 CYS A 228 SG 96.0 103.2 REMARK 620 4 CYS A 231 SG 112.3 93.7 85.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 DBREF 5WY5 B 78 294 UNP Q96MG7 NSE3_HUMAN 78 294 DBREF 5WY5 A 9 246 UNP Q8WV22 NSE1_HUMAN 9 246 SEQADV 5WY5 LEU B 193 UNP Q96MG7 ILE 193 ENGINEERED MUTATION SEQADV 5WY5 LEU B 258 UNP Q96MG7 THR 258 ENGINEERED MUTATION SEQRES 1 B 217 GLY PRO ARG SER GLN LYS GLN LEU GLU LEU LYS VAL SER SEQRES 2 B 217 GLU LEU VAL GLN PHE LEU LEU ILE LYS ASP GLN LYS LYS SEQRES 3 B 217 ILE PRO ILE LYS ARG ALA ASP ILE LEU LYS HIS VAL ILE SEQRES 4 B 217 GLY ASP TYR LYS ASP ILE PHE PRO ASP LEU PHE LYS ARG SEQRES 5 B 217 ALA ALA GLU ARG LEU GLN TYR VAL PHE GLY TYR LYS LEU SEQRES 6 B 217 VAL GLU LEU GLU PRO LYS SER ASN THR TYR ILE LEU ILE SEQRES 7 B 217 ASN THR LEU GLU PRO VAL GLU GLU ASP ALA GLU MET ARG SEQRES 8 B 217 GLY ASP GLN GLY THR PRO THR THR GLY LEU LEU MET ILE SEQRES 9 B 217 VAL LEU GLY LEU ILE PHE MET LYS GLY ASN THR LEU LYS SEQRES 10 B 217 GLU THR GLU ALA TRP ASP PHE LEU ARG ARG LEU GLY VAL SEQRES 11 B 217 TYR PRO THR LYS LYS HIS LEU ILE PHE GLY ASP PRO LYS SEQRES 12 B 217 LYS LEU ILE THR GLU ASP PHE VAL ARG GLN ARG TYR LEU SEQRES 13 B 217 GLU TYR ARG ARG ILE PRO HIS THR ASP PRO VAL ASP TYR SEQRES 14 B 217 GLU PHE GLN TRP GLY PRO ARG THR ASN LEU GLU LEU SER SEQRES 15 B 217 LYS MET LYS VAL LEU LYS PHE VAL ALA LYS VAL HIS ASN SEQRES 16 B 217 GLN ASP PRO LYS ASP TRP PRO ALA GLN TYR CYS GLU ALA SEQRES 17 B 217 LEU ALA ASP GLU GLU ASN ARG ALA ARG SEQRES 1 A 238 GLY VAL MET THR ASP VAL HIS ARG ARG PHE LEU GLN LEU SEQRES 2 A 238 LEU MET THR HIS GLY VAL LEU GLU GLU TRP ASP VAL LYS SEQRES 3 A 238 ARG LEU GLN THR HIS CYS TYR LYS VAL HIS ASP ARG ASN SEQRES 4 A 238 ALA THR VAL ASP LYS LEU GLU ASP PHE ILE ASN ASN ILE SEQRES 5 A 238 ASN SER VAL LEU GLU SER LEU TYR ILE GLU ILE LYS ARG SEQRES 6 A 238 GLY VAL THR GLU ASP ASP GLY ARG PRO ILE TYR ALA LEU SEQRES 7 A 238 VAL ASN LEU ALA THR THR SER ILE SER LYS MET ALA THR SEQRES 8 A 238 ASP PHE ALA GLU ASN GLU LEU ASP LEU PHE ARG LYS ALA SEQRES 9 A 238 LEU GLU LEU ILE ILE ASP SER GLU THR GLY PHE ALA SER SEQRES 10 A 238 SER THR ASN ILE LEU ASN LEU VAL ASP GLN LEU LYS GLY SEQRES 11 A 238 LYS LYS MET ARG LYS LYS GLU ALA GLU GLN VAL LEU GLN SEQRES 12 A 238 LYS PHE VAL GLN ASN LYS TRP LEU ILE GLU LYS GLU GLY SEQRES 13 A 238 GLU PHE THR LEU HIS GLY ARG ALA ILE LEU GLU MET GLU SEQRES 14 A 238 GLN TYR ILE ARG GLU THR TYR PRO ASP ALA VAL LYS ILE SEQRES 15 A 238 CYS ASN ILE CYS HIS SER LEU LEU ILE GLN GLY GLN SER SEQRES 16 A 238 CYS GLU THR CYS GLY ILE ARG MET HIS LEU PRO CYS VAL SEQRES 17 A 238 ALA LYS TYR PHE GLN SER ASN ALA GLU PRO ARG CYS PRO SEQRES 18 A 238 HIS CYS ASN ASP TYR TRP PRO HIS GLU ILE PRO LYS VAL SEQRES 19 A 238 PHE ASP PRO GLU HET MG B 301 1 HET MG B 302 1 HET ZN A 301 1 HET ZN A 302 1 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 3 MG 2(MG 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *17(H2 O) HELIX 1 AA1 SER B 81 LYS B 103 1 23 HELIX 2 AA2 ARG B 108 VAL B 115 1 8 HELIX 3 AA3 ILE B 116 ASP B 121 5 6 HELIX 4 AA4 ILE B 122 GLY B 139 1 18 HELIX 5 AA5 THR B 173 LYS B 189 1 17 HELIX 6 AA6 LYS B 194 LEU B 205 1 12 HELIX 7 AA7 LYS B 220 ARG B 231 1 12 HELIX 8 AA8 GLY B 251 LEU B 256 1 6 HELIX 9 AA9 SER B 259 ASN B 272 1 14 HELIX 10 AB1 ASP B 277 ARG B 294 1 18 HELIX 11 AB2 THR A 12 HIS A 25 1 14 HELIX 12 AB3 GLU A 30 HIS A 44 1 15 HELIX 13 AB4 LYS A 52 GLU A 65 1 14 HELIX 14 AB5 ILE A 94 THR A 99 1 6 HELIX 15 AB6 ALA A 102 SER A 119 1 18 HELIX 16 AB7 SER A 126 ASN A 131 1 6 HELIX 17 AB8 LEU A 132 ASP A 134 5 3 HELIX 18 AB9 ARG A 142 ASN A 156 1 15 HELIX 19 AC1 HIS A 169 TYR A 184 1 16 HELIX 20 AC2 HIS A 212 PHE A 220 1 9 SHEET 1 AA1 3 ILE B 106 LYS B 107 0 SHEET 2 AA1 3 THR B 151 ASN B 156 -1 O TYR B 152 N ILE B 106 SHEET 3 AA1 3 TYR B 140 GLU B 144 -1 N LYS B 141 O ILE B 155 SHEET 1 AA2 2 LEU B 233 GLU B 234 0 SHEET 2 AA2 2 PHE B 248 GLN B 249 -1 O GLN B 249 N LEU B 233 SHEET 1 AA3 3 VAL A 27 GLU A 29 0 SHEET 2 AA3 3 PRO A 82 ASN A 88 -1 O TYR A 84 N LEU A 28 SHEET 3 AA3 3 ILE A 69 VAL A 75 -1 N GLU A 70 O VAL A 87 SHEET 1 AA4 3 ALA A 124 SER A 125 0 SHEET 2 AA4 3 GLU A 165 LEU A 168 -1 O PHE A 166 N ALA A 124 SHEET 3 AA4 3 LEU A 159 LYS A 162 -1 N ILE A 160 O THR A 167 SHEET 1 AA5 2 GLN A 202 SER A 203 0 SHEET 2 AA5 2 ARG A 210 MET A 211 -1 O MET A 211 N GLN A 202 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.34 LINK SG CYS A 194 ZN ZN A 301 1555 1555 2.54 LINK SG CYS A 204 ZN ZN A 302 1555 1555 2.55 LINK SG CYS A 207 ZN ZN A 302 1555 1555 2.33 LINK SG CYS A 215 ZN ZN A 301 1555 1555 2.39 LINK SG CYS A 228 ZN ZN A 302 1555 1555 2.35 LINK SG CYS A 231 ZN ZN A 302 1555 1555 2.50 CISPEP 1 ILE B 104 PRO B 105 0 -1.81 CISPEP 2 LEU B 158 GLU B 159 0 -2.32 CISPEP 3 GLU B 159 PRO B 160 0 -10.31 SITE 1 AC1 1 ARG B 203 SITE 1 AC2 4 CYS A 191 CYS A 194 HIS A 212 CYS A 215 SITE 1 AC3 5 CYS A 204 CYS A 207 CYS A 228 HIS A 230 SITE 2 AC3 5 CYS A 231 CRYST1 83.257 154.327 53.726 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018613 0.00000