PDB Short entry for 5WY8 HEADER HYDROLASE/PROTEIN BINDING 11-JAN-17 5WY8 TITLE CRYSTAL STRUCTURE OF PTP DELTA IG1-IG3 IN COMPLEX WITH IL1RAPL1 IG1- TITLE 2 IG3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-318; COMPND 5 SYNONYM: R-PTP-DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN-LIKE 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 27-349; COMPND 12 SYNONYM: IL1RAPL-1,OLIGOPHRENIN-4,THREE IMMUNOGLOBULIN DOMAIN- COMPND 13 CONTAINING IL-1 RECEPTOR-RELATED 2,TIGIRR-2,X-LINKED INTERLEUKIN-1 COMPND 14 RECEPTOR ACCESSORY PROTEIN-LIKE 1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IL1RAPL1, OPHN4; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SYNAPTIC ADHESION, HYDROLASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KIM,S.Y.WON,D.KIM REVDAT 2 29-JUL-20 5WY8 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 22-NOV-17 5WY8 0 JRNL AUTH S.Y.WON,C.Y.KIM,D.KIM,J.KO,J.W.UM,S.B.LEE,M.BUCK,E.KIM, JRNL AUTH 2 W.D.HEO,J.O.LEE,H.M.KIM JRNL TITL LAR-RPTP CLUSTERING IS MODULATED BY COMPETITIVE BINDING JRNL TITL 2 BETWEEN SYNAPTIC ADHESION PARTNERS AND HEPARAN SULFATE JRNL REF FRONT MOL NEUROSCI V. 10 327 2017 JRNL REFN ESSN 1662-5099 JRNL PMID 29081732 JRNL DOI 10.3389/FNMOL.2017.00327 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8983 - 7.3907 0.95 1824 135 0.2432 0.2627 REMARK 3 2 7.3907 - 5.8694 1.00 1873 149 0.2359 0.2590 REMARK 3 3 5.8694 - 5.1284 1.00 1861 146 0.2142 0.2279 REMARK 3 4 5.1284 - 4.6599 1.00 1830 146 0.1916 0.2012 REMARK 3 5 4.6599 - 4.3261 1.00 1840 150 0.1827 0.2230 REMARK 3 6 4.3261 - 4.0712 1.00 1830 139 0.2075 0.2408 REMARK 3 7 4.0712 - 3.8674 1.00 1846 144 0.2294 0.2444 REMARK 3 8 3.8674 - 3.6991 1.00 1808 145 0.2440 0.2691 REMARK 3 9 3.6991 - 3.5567 1.00 1824 135 0.2570 0.2902 REMARK 3 10 3.5567 - 3.4340 1.00 1831 145 0.2732 0.2886 REMARK 3 11 3.4340 - 3.3267 1.00 1822 142 0.2848 0.3146 REMARK 3 12 3.3267 - 3.2316 1.00 1834 141 0.2842 0.3078 REMARK 3 13 3.2316 - 3.1466 1.00 1812 137 0.3085 0.3440 REMARK 3 14 3.1466 - 3.0698 0.96 1748 138 0.3245 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5192 REMARK 3 ANGLE : 0.976 7066 REMARK 3 CHIRALITY : 0.062 820 REMARK 3 PLANARITY : 0.007 897 REMARK 3 DIHEDRAL : 19.086 3160 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28613 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-CL, PH7.5, 200MM ZINC REMARK 280 ACETATE, 10% PEG 8000(V/V), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.35733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.17867 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 70.17867 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.35733 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1201 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 177 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 68 OD2 ASP A 92 2.10 REMARK 500 NH2 ARG B 268 OE2 GLU B 314 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 89 -81.58 76.18 REMARK 500 PRO A 155 -178.78 -69.75 REMARK 500 PHE A 163 -4.93 70.56 REMARK 500 ARG A 226 -158.85 -128.72 REMARK 500 SER B 35 -73.16 -39.98 REMARK 500 GLU B 100 -123.14 58.66 REMARK 500 ASN B 122 -161.63 -128.34 REMARK 500 SER B 157 -7.09 69.65 REMARK 500 CYS B 185 15.79 59.90 REMARK 500 PHE B 196 69.10 60.95 REMARK 500 ARG B 198 -118.56 59.44 REMARK 500 GLU B 291 -6.02 -140.89 REMARK 500 GLU B 295 -123.81 56.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1202 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 412 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 106 OE1 REMARK 620 2 GLU A 106 OE2 54.7 REMARK 620 3 HIS B 344 NE2 137.1 95.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 208 OE1 REMARK 620 2 GLU B 208 OE2 61.1 REMARK 620 3 ASP B 209 OD1 23.4 63.9 REMARK 620 4 ASP B 209 OD2 15.0 69.3 12.5 REMARK 620 5 HIS B 309 NE2 135.3 76.8 139.5 146.1 REMARK 620 N 1 2 3 4 DBREF 5WY8 A 21 318 UNP P23468 PTPRD_HUMAN 21 318 DBREF 5WY8 B 27 349 UNP Q9NZN1 IRPL1_HUMAN 27 349 SEQRES 1 A 298 GLU THR PRO PRO ARG PHE THR ARG THR PRO VAL ASP GLN SEQRES 2 A 298 THR GLY VAL SER GLY GLY VAL ALA SER PHE ILE CYS GLN SEQRES 3 A 298 ALA THR GLY ASP PRO ARG PRO LYS ILE VAL TRP ASN LYS SEQRES 4 A 298 LYS GLY LYS LYS VAL SER ASN GLN ARG PHE GLU VAL ILE SEQRES 5 A 298 GLU PHE ASP ASP GLY SER GLY SER VAL LEU ARG ILE GLN SEQRES 6 A 298 PRO LEU ARG THR PRO ARG ASP GLU ALA ILE TYR GLU CYS SEQRES 7 A 298 VAL ALA SER ASN ASN VAL GLY GLU ILE SER VAL SER THR SEQRES 8 A 298 ARG LEU THR VAL LEU ARG GLU ASP GLN ILE PRO ARG GLY SEQRES 9 A 298 PHE PRO THR ILE ASP MET GLY PRO GLN LEU LYS VAL VAL SEQRES 10 A 298 GLU ARG THR ARG THR ALA THR MET LEU CYS ALA ALA SER SEQRES 11 A 298 GLY ASN PRO ASP PRO GLU ILE THR TRP PHE LYS ASP PHE SEQRES 12 A 298 LEU PRO VAL ASP THR SER ASN ASN ASN GLY ARG ILE LYS SEQRES 13 A 298 GLN LEU ARG SER GLU SER ILE GLY GLY THR PRO ILE ARG SEQRES 14 A 298 GLY ALA LEU GLN ILE GLU GLN SER GLU GLU SER ASP GLN SEQRES 15 A 298 GLY LYS TYR GLU CYS VAL ALA THR ASN SER ALA GLY THR SEQRES 16 A 298 ARG TYR SER ALA PRO ALA ASN LEU TYR VAL ARG GLU LEU SEQRES 17 A 298 ARG GLU VAL ARG ARG VAL PRO PRO ARG PHE SER ILE PRO SEQRES 18 A 298 PRO THR ASN HIS GLU ILE MET PRO GLY GLY SER VAL ASN SEQRES 19 A 298 ILE THR CYS VAL ALA VAL GLY SER PRO MET PRO TYR VAL SEQRES 20 A 298 LYS TRP MET LEU GLY ALA GLU ASP LEU THR PRO GLU ASP SEQRES 21 A 298 ASP MET PRO ILE GLY ARG ASN VAL LEU GLU LEU ASN ASP SEQRES 22 A 298 VAL ARG GLN SER ALA ASN TYR THR CYS VAL ALA MET SER SEQRES 23 A 298 THR LEU GLY VAL ILE GLU ALA ILE ALA GLN ILE THR SEQRES 1 B 323 SER ALA ASP GLY CYS THR ASP TRP SER ILE ASP ILE LYS SEQRES 2 B 323 LYS TYR GLN VAL LEU VAL GLY GLU PRO VAL ARG ILE LYS SEQRES 3 B 323 CYS ALA LEU PHE TYR GLY TYR ILE ARG THR ASN TYR SER SEQRES 4 B 323 LEU ALA GLN SER ALA GLY LEU SER LEU MET TRP TYR LYS SEQRES 5 B 323 SER SER GLY PRO GLY ASP PHE GLU GLU PRO ILE ALA PHE SEQRES 6 B 323 ASP GLY SER ARG MET SER LYS GLU GLU ASP SER ILE TRP SEQRES 7 B 323 PHE ARG PRO THR LEU LEU GLN ASP SER GLY LEU TYR ALA SEQRES 8 B 323 CYS VAL ILE ARG ASN SER THR TYR CYS MET LYS VAL SER SEQRES 9 B 323 ILE SER LEU THR VAL GLY GLU ASN ASP THR GLY LEU CYS SEQRES 10 B 323 TYR ASN SER LYS MET LYS TYR PHE GLU LYS ALA GLU LEU SEQRES 11 B 323 SER LYS SER LYS GLU ILE SER CYS ARG ASP ILE GLU ASP SEQRES 12 B 323 PHE LEU LEU PRO THR ARG GLU PRO GLU ILE LEU TRP TYR SEQRES 13 B 323 LYS GLU CYS ARG THR LYS THR TRP ARG PRO SER ILE VAL SEQRES 14 B 323 PHE LYS ARG ASP THR LEU LEU ILE ARG GLU VAL ARG GLU SEQRES 15 B 323 ASP ASP ILE GLY ASN TYR THR CYS GLU LEU LYS TYR GLY SEQRES 16 B 323 GLY PHE VAL VAL ARG ARG THR THR GLU LEU THR VAL THR SEQRES 17 B 323 ALA PRO LEU THR ASP LYS PRO PRO LYS LEU LEU TYR PRO SEQRES 18 B 323 MET GLU SER LYS LEU THR ILE GLN GLU THR GLN LEU GLY SEQRES 19 B 323 ASP SER ALA ASN LEU THR CYS ARG ALA PHE PHE GLY TYR SEQRES 20 B 323 SER GLY ASP VAL SER PRO LEU ILE TYR TRP MET LYS GLY SEQRES 21 B 323 GLU LYS PHE ILE GLU ASP LEU ASP GLU ASN ARG VAL TRP SEQRES 22 B 323 GLU SER ASP ILE ARG ILE LEU LYS GLU HIS LEU GLY GLU SEQRES 23 B 323 GLN GLU VAL SER ILE SER LEU ILE VAL ASP SER VAL GLU SEQRES 24 B 323 GLU GLY ASP LEU GLY ASN TYR SER CYS TYR VAL GLU ASN SEQRES 25 B 323 GLY ASN GLY ARG ARG HIS ALA SER VAL LEU LEU HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET NAG G 1 14 HET NAG G 2 14 HET NAG A1103 14 HET NAG B 403 14 HET ZN B 412 1 HET ZN B 413 1 HET ZN B 414 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 6 BMA C6 H12 O6 FORMUL 6 MAN C6 H12 O6 FORMUL 10 ZN 3(ZN 2+) FORMUL 13 HOH *6(H2 O) HELIX 1 AA1 GLU A 198 GLN A 202 5 5 HELIX 2 AA2 CYS B 53 TYR B 59 1 7 HELIX 3 AA3 ASN B 63 ALA B 70 1 8 HELIX 4 AA4 LEU B 109 SER B 113 5 5 HELIX 5 AA5 ILE B 167 LEU B 171 5 5 HELIX 6 AA6 ARG B 207 ILE B 211 5 5 SHEET 1 AA1 4 ARG A 25 ARG A 28 0 SHEET 2 AA1 4 ALA A 41 THR A 48 -1 O THR A 48 N ARG A 25 SHEET 3 AA1 4 SER A 80 ILE A 84 -1 O ILE A 84 N ALA A 41 SHEET 4 AA1 4 PHE A 69 GLU A 73 -1 N GLU A 70 O ARG A 83 SHEET 1 AA2 5 GLN A 33 VAL A 36 0 SHEET 2 AA2 5 GLU A 106 LEU A 116 1 O LEU A 116 N GLY A 35 SHEET 3 AA2 5 ALA A 94 SER A 101 -1 N ALA A 94 O LEU A 113 SHEET 4 AA2 5 LYS A 54 LYS A 59 -1 N LYS A 54 O SER A 101 SHEET 5 AA2 5 LYS A 62 LYS A 63 -1 O LYS A 62 N LYS A 59 SHEET 1 AA3 4 THR A 127 MET A 130 0 SHEET 2 AA3 4 ALA A 143 SER A 150 -1 O ALA A 148 N MET A 130 SHEET 3 AA3 4 ILE A 188 ILE A 194 -1 O ILE A 188 N ALA A 149 SHEET 4 AA3 4 ILE A 175 ARG A 179 -1 N LEU A 178 O ALA A 191 SHEET 1 AA4 5 LYS A 135 GLU A 138 0 SHEET 2 AA4 5 ALA A 221 ARG A 226 1 O ARG A 226 N VAL A 137 SHEET 3 AA4 5 GLY A 203 THR A 210 -1 N GLY A 203 O LEU A 223 SHEET 4 AA4 5 GLU A 156 LYS A 161 -1 N THR A 158 O VAL A 208 SHEET 5 AA4 5 LEU A 164 PRO A 165 -1 O LEU A 164 N LYS A 161 SHEET 1 AA5 4 LYS A 135 GLU A 138 0 SHEET 2 AA5 4 ALA A 221 ARG A 226 1 O ARG A 226 N VAL A 137 SHEET 3 AA5 4 GLY A 203 THR A 210 -1 N GLY A 203 O LEU A 223 SHEET 4 AA5 4 THR A 215 TYR A 217 -1 O ARG A 216 N ALA A 209 SHEET 1 AA6 3 VAL A 234 ILE A 240 0 SHEET 2 AA6 3 VAL A 253 SER A 262 -1 O VAL A 258 N ILE A 240 SHEET 3 AA6 3 ARG A 286 LEU A 291 -1 O LEU A 291 N VAL A 253 SHEET 1 AA7 4 GLU A 274 ASP A 275 0 SHEET 2 AA7 4 TYR A 266 LEU A 271 -1 N LEU A 271 O GLU A 274 SHEET 3 AA7 4 ALA A 298 MET A 305 -1 O THR A 301 N MET A 270 SHEET 4 AA7 4 VAL A 310 ILE A 317 -1 O ALA A 313 N CYS A 302 SHEET 1 AA8 3 THR B 32 TRP B 34 0 SHEET 2 AA8 3 CYS B 126 GLY B 136 1 O LYS B 128 N TRP B 34 SHEET 3 AA8 3 LYS B 40 LEU B 44 1 N TYR B 41 O THR B 134 SHEET 1 AA9 5 THR B 32 TRP B 34 0 SHEET 2 AA9 5 CYS B 126 GLY B 136 1 O LYS B 128 N TRP B 34 SHEET 3 AA9 5 GLY B 114 ARG B 121 -1 N TYR B 116 O ILE B 131 SHEET 4 AA9 5 SER B 73 SER B 79 -1 N SER B 79 O LEU B 115 SHEET 5 AA9 5 GLU B 87 PRO B 88 -1 O GLU B 87 N LYS B 78 SHEET 1 AB1 3 VAL B 49 LYS B 52 0 SHEET 2 AB1 3 SER B 102 PHE B 105 -1 O PHE B 105 N VAL B 49 SHEET 3 AB1 3 MET B 96 GLU B 99 -1 N SER B 97 O TRP B 104 SHEET 1 AB2 4 TYR B 150 GLU B 155 0 SHEET 2 AB2 4 PHE B 223 THR B 234 1 O GLU B 230 N TYR B 150 SHEET 3 AB2 4 GLY B 212 TYR B 220 -1 N TYR B 214 O THR B 229 SHEET 4 AB2 4 LEU B 180 LYS B 183 -1 N LEU B 180 O GLU B 217 SHEET 1 AB3 2 LYS B 160 SER B 163 0 SHEET 2 AB3 2 THR B 200 ILE B 203 -1 O LEU B 201 N ILE B 162 SHEET 1 AB4 4 LYS B 243 TYR B 246 0 SHEET 2 AB4 4 ALA B 263 PHE B 271 -1 O PHE B 270 N LYS B 243 SHEET 3 AB4 4 GLU B 312 VAL B 321 -1 O GLN B 313 N PHE B 271 SHEET 4 AB4 4 VAL B 298 GLU B 300 -1 N TRP B 299 O ILE B 320 SHEET 1 AB5 4 LYS B 243 TYR B 246 0 SHEET 2 AB5 4 ALA B 263 PHE B 271 -1 O PHE B 270 N LYS B 243 SHEET 3 AB5 4 GLU B 312 VAL B 321 -1 O GLN B 313 N PHE B 271 SHEET 4 AB5 4 ARG B 304 HIS B 309 -1 N LYS B 307 O GLU B 314 SHEET 1 AB6 4 THR B 253 ILE B 254 0 SHEET 2 AB6 4 GLY B 341 LEU B 348 1 O LEU B 348 N THR B 253 SHEET 3 AB6 4 ASN B 331 ASN B 338 -1 N TYR B 332 O VAL B 347 SHEET 4 AB6 4 LEU B 280 LYS B 285 -1 N TYR B 282 O TYR B 335 SSBOND 1 CYS A 45 CYS A 98 1555 1555 2.03 SSBOND 2 CYS A 147 CYS A 207 1555 1555 2.02 SSBOND 3 CYS A 257 CYS A 302 1555 1555 2.03 SSBOND 4 CYS B 31 CYS B 126 1555 1555 2.04 SSBOND 5 CYS B 53 CYS B 118 1555 1555 2.03 SSBOND 6 CYS B 143 CYS B 185 1555 1555 2.05 SSBOND 7 CYS B 164 CYS B 216 1555 1555 2.03 SSBOND 8 CYS B 267 CYS B 334 1555 1555 2.02 LINK ND2 ASN A 254 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 299 C1 NAG A1103 1555 1555 1.44 LINK ND2 ASN B 63 C1 NAG B 403 1555 1555 1.44 LINK ND2 ASN B 122 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 138 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 213 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 264 C1 NAG D 1 1555 1555 1.64 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK OE1 GLU A 106 ZN ZN B 412 1555 5554 1.79 LINK OE2 GLU A 106 ZN ZN B 412 1555 5554 2.69 LINK OE1 GLU B 208 ZN ZN B 414 1555 1555 2.37 LINK OE2 GLU B 208 ZN ZN B 414 1555 1555 1.85 LINK OD1 ASP B 209 ZN ZN B 414 1555 6555 2.22 LINK OD2 ASP B 209 ZN ZN B 414 1555 6555 1.81 LINK NE2 HIS B 309 ZN ZN B 414 1555 1555 1.98 LINK NE2 HIS B 344 ZN ZN B 412 1555 1555 1.85 CISPEP 1 ASP A 50 PRO A 51 0 1.07 CISPEP 2 SER A 262 PRO A 263 0 1.89 CISPEP 3 ARG B 106 PRO B 107 0 -7.28 CISPEP 4 TYR B 246 PRO B 247 0 -0.69 CRYST1 110.416 110.416 210.536 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009057 0.005229 0.000000 0.00000 SCALE2 0.000000 0.010458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004750 0.00000