PDB Short entry for 5WZF HEADER HYDROLASE 17-JAN-17 5WZF TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS VAPC20 (RV2549C), TITLE 2 SARCIN-RICIN LOOP CLEAVING TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RRNA-SPECIFIC ENDONUCLEASE VAPC20; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIBONUCLEASE VAPC20,RNASE VAPC20,TOXIN VAPC20; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 23S RRNA-SPECIFIC ENDONUCLEASE VAPC20; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RIBONUCLEASE VAPC20,RNASE VAPC20,TOXIN VAPC20; COMPND 11 EC: 3.1.-.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: VAPC20, RV2549C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 10 ORGANISM_TAXID: 83332; SOURCE 11 GENE: VAPC20, RV2549C; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS VAPC TOXIN, TOXIN-ANTITOXIN SYSTEM, SARCIN-RICIN LOOP CLEAVING TOXIN, KEYWDS 2 PIN-DOMAIN, HOMODIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.G.THAKUR,A.DEEP REVDAT 3 01-MAR-23 5WZF 1 SOURCE DBREF SEQADV REVDAT 2 13-DEC-17 5WZF 1 JRNL REVDAT 1 25-OCT-17 5WZF 0 JRNL AUTH A.DEEP,S.KAUNDAL,S.AGARWAL,R.SINGH,K.G.THAKUR JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS VAPC20 TOXIN JRNL TITL 2 AND ITS INTERACTIONS WITH COGNATE ANTITOXIN, VAPB20, SUGGEST JRNL TITL 3 A MODEL FOR TOXIN-ANTITOXIN ASSEMBLY. JRNL REF FEBS J. V. 284 4066 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28986943 JRNL DOI 10.1111/FEBS.14289 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0129 - 3.4990 0.96 2877 138 0.1447 0.1519 REMARK 3 2 3.4990 - 2.7776 0.98 2842 126 0.1638 0.1810 REMARK 3 3 2.7776 - 2.4266 0.99 2817 142 0.1720 0.2069 REMARK 3 4 2.4266 - 2.2048 1.00 2782 152 0.1749 0.1913 REMARK 3 5 2.2048 - 2.0468 1.00 2788 163 0.1813 0.2462 REMARK 3 6 2.0468 - 1.9261 0.99 2763 148 0.1956 0.2310 REMARK 3 7 1.9261 - 1.8297 0.98 2718 135 0.2257 0.2646 REMARK 3 8 1.8297 - 1.7500 0.95 2597 162 0.2762 0.3170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2124 REMARK 3 ANGLE : 0.708 2887 REMARK 3 CHIRALITY : 0.027 313 REMARK 3 PLANARITY : 0.003 372 REMARK 3 DIHEDRAL : 13.013 737 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0905 6.6850 85.4846 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.1283 REMARK 3 T33: 0.1141 T12: -0.0077 REMARK 3 T13: 0.0185 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.5893 L22: 3.1969 REMARK 3 L33: 3.2358 L12: 0.7617 REMARK 3 L13: 0.5036 L23: -0.6530 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.1448 S13: 0.1992 REMARK 3 S21: -0.1967 S22: 0.0146 S23: -0.1509 REMARK 3 S31: -0.2415 S32: 0.1567 S33: 0.0517 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5609 -3.6930 100.8346 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.1947 REMARK 3 T33: 0.1551 T12: 0.0225 REMARK 3 T13: 0.0033 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.6331 L22: 2.2203 REMARK 3 L33: 6.6770 L12: -0.4760 REMARK 3 L13: -0.0823 L23: 0.3989 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: -0.2479 S13: -0.1269 REMARK 3 S21: 0.1664 S22: 0.1628 S23: -0.1326 REMARK 3 S31: 0.6578 S32: 0.5795 S33: -0.1360 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0784 3.5598 102.9581 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1874 REMARK 3 T33: 0.1648 T12: -0.0204 REMARK 3 T13: -0.0127 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 8.3431 L22: 5.1122 REMARK 3 L33: 7.7070 L12: -0.2697 REMARK 3 L13: -2.6325 L23: 3.5110 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: -0.3536 S13: 0.4332 REMARK 3 S21: 0.1599 S22: -0.0452 S23: -0.1656 REMARK 3 S31: -0.1598 S32: 0.2724 S33: -0.0794 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7259 8.4458 94.8453 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1882 REMARK 3 T33: 0.1988 T12: -0.0318 REMARK 3 T13: 0.0072 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 5.9450 L22: 5.1807 REMARK 3 L33: 9.4434 L12: 2.3672 REMARK 3 L13: -0.7607 L23: -3.3490 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: -0.0451 S13: 0.6002 REMARK 3 S21: 0.0102 S22: 0.1911 S23: -0.0226 REMARK 3 S31: -0.5849 S32: 0.2004 S33: -0.2671 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1678 1.3837 106.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.1666 REMARK 3 T33: 0.1206 T12: 0.0129 REMARK 3 T13: 0.0363 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 7.1211 L22: 7.9237 REMARK 3 L33: 7.3765 L12: 1.9145 REMARK 3 L13: 4.2118 L23: 4.9314 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0479 S13: 0.0648 REMARK 3 S21: 0.4367 S22: 0.0883 S23: 0.0509 REMARK 3 S31: 0.3076 S32: -0.1024 S33: -0.1093 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4663 13.1484 110.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1644 REMARK 3 T33: 0.2955 T12: 0.0193 REMARK 3 T13: -0.0186 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 7.6271 L22: 8.7341 REMARK 3 L33: 5.0291 L12: -5.9624 REMARK 3 L13: -0.7013 L23: -2.2478 REMARK 3 S TENSOR REMARK 3 S11: -0.2931 S12: -0.3224 S13: 0.8716 REMARK 3 S21: 0.1153 S22: 0.5034 S23: -0.7951 REMARK 3 S31: -0.5400 S32: 0.0317 S33: -0.2037 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8634 2.8829 113.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.3458 REMARK 3 T33: 0.2167 T12: 0.0047 REMARK 3 T13: 0.0732 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 8.9079 L22: 8.6277 REMARK 3 L33: 4.7070 L12: 5.3457 REMARK 3 L13: 1.1107 L23: 0.5390 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: -0.3816 S13: -0.1667 REMARK 3 S21: 0.5218 S22: -0.1170 S23: 0.8652 REMARK 3 S31: 0.4290 S32: -0.7637 S33: 0.2269 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5419 4.0057 104.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1582 REMARK 3 T33: 0.1105 T12: 0.0374 REMARK 3 T13: -0.0105 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 6.8542 L22: 8.2875 REMARK 3 L33: 5.2274 L12: 3.6641 REMARK 3 L13: 0.2124 L23: 2.6837 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: 0.1445 S13: 0.2956 REMARK 3 S21: -0.1370 S22: 0.2409 S23: -0.0378 REMARK 3 S31: -0.1361 S32: 0.0826 S33: -0.1123 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5918 2.8698 113.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2875 REMARK 3 T33: 0.1669 T12: 0.0084 REMARK 3 T13: 0.0259 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 5.4342 L22: 8.1239 REMARK 3 L33: 5.4395 L12: 1.6261 REMARK 3 L13: -0.3576 L23: -1.6555 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.6197 S13: 0.1856 REMARK 3 S21: 0.4435 S22: 0.0715 S23: 0.4446 REMARK 3 S31: -0.0428 S32: -0.0799 S33: -0.1153 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5416 -9.1696 105.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.1875 REMARK 3 T33: 0.2046 T12: 0.0184 REMARK 3 T13: 0.0260 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 6.4644 L22: 2.5047 REMARK 3 L33: 4.7173 L12: -3.4236 REMARK 3 L13: -5.2923 L23: 3.0101 REMARK 3 S TENSOR REMARK 3 S11: -0.3948 S12: -0.2409 S13: -0.2149 REMARK 3 S21: 0.4615 S22: 0.1699 S23: 0.2087 REMARK 3 S31: 0.8286 S32: -0.2835 S33: 0.3186 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4370 -5.2881 86.7176 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1752 REMARK 3 T33: 0.1723 T12: -0.0401 REMARK 3 T13: -0.0063 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 6.8557 L22: 4.9548 REMARK 3 L33: 8.4939 L12: -3.2715 REMARK 3 L13: 0.7320 L23: -5.5372 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.2362 S13: -0.4740 REMARK 3 S21: -0.6427 S22: 0.1307 S23: 0.3603 REMARK 3 S31: 0.5255 S32: -0.3134 S33: -0.1522 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0357 5.4693 86.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.2846 REMARK 3 T33: 0.3520 T12: 0.0493 REMARK 3 T13: -0.0243 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 6.6659 L22: 5.8634 REMARK 3 L33: 7.5321 L12: -0.8655 REMARK 3 L13: 4.0091 L23: -2.1419 REMARK 3 S TENSOR REMARK 3 S11: -0.2867 S12: 0.4672 S13: 0.9442 REMARK 3 S21: -0.1407 S22: 0.2072 S23: 0.8717 REMARK 3 S31: -0.4889 S32: -0.4006 S33: 0.2104 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5387 -4.4665 96.9111 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1714 REMARK 3 T33: 0.1498 T12: -0.0136 REMARK 3 T13: -0.0136 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 7.5424 L22: 4.5969 REMARK 3 L33: 6.8230 L12: 0.1508 REMARK 3 L13: -3.9598 L23: 0.3862 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: -0.0060 S13: -0.3815 REMARK 3 S21: -0.0980 S22: 0.0482 S23: 0.1711 REMARK 3 S31: 0.3555 S32: -0.2373 S33: 0.1583 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7043 3.9214 98.8293 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.2892 REMARK 3 T33: 0.1774 T12: 0.0014 REMARK 3 T13: -0.0252 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 8.5288 L22: 8.0297 REMARK 3 L33: 6.3601 L12: -0.7740 REMARK 3 L13: -3.1491 L23: 0.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: -0.0540 S13: 0.3296 REMARK 3 S21: 0.0096 S22: 0.0590 S23: 0.2961 REMARK 3 S31: -0.3910 S32: -0.2434 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 79.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : 0.52600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M POTASSIUM THIOCYANATE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.40500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 131 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLN B -1 REMARK 465 GLU B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 295 O HOH A 300 2.04 REMARK 500 NH1 ARG A 106 O HOH A 201 2.06 REMARK 500 O HOH A 205 O HOH A 210 2.08 REMARK 500 OD2 ASP B 98 O HOH B 201 2.15 REMARK 500 NE ARG B 19 O HOH B 202 2.16 REMARK 500 O HOH A 303 O HOH B 259 2.17 REMARK 500 OD1 ASP A 119 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 325 O HOH B 331 2554 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CSO B 52 O - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CSO B 52 26.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 329 DISTANCE = 6.79 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WZ4 RELATED DB: PDB DBREF 5WZF A 2 131 UNP P95004 VPC20_MYCTU 2 131 DBREF 5WZF B 2 131 UNP P95004 VPC20_MYCTU 2 131 SEQADV 5WZF MET A -12 UNP P95004 INITIATING METHIONINE SEQADV 5WZF GLY A -11 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER A -10 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER A -9 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -8 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -7 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -6 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -5 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -4 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS A -3 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER A -2 UNP P95004 EXPRESSION TAG SEQADV 5WZF GLN A -1 UNP P95004 EXPRESSION TAG SEQADV 5WZF ALA A 0 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER A 1 UNP P95004 EXPRESSION TAG SEQADV 5WZF MET B -12 UNP P95004 INITIATING METHIONINE SEQADV 5WZF GLY B -11 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER B -10 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER B -9 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -8 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -7 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -6 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -5 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -4 UNP P95004 EXPRESSION TAG SEQADV 5WZF HIS B -3 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER B -2 UNP P95004 EXPRESSION TAG SEQADV 5WZF GLN B -1 UNP P95004 EXPRESSION TAG SEQADV 5WZF ALA B 0 UNP P95004 EXPRESSION TAG SEQADV 5WZF SER B 1 UNP P95004 EXPRESSION TAG SEQRES 1 A 144 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ALA SEQRES 2 A 144 SER ILE PHE VAL ASP THR SER PHE TRP ALA ALA LEU GLY SEQRES 3 A 144 ASN ALA GLY ASP ALA ARG HIS GLY THR ALA LYS ARG LEU SEQRES 4 A 144 TRP ALA SER LYS PRO PRO VAL VAL MET THR SER ASN HIS SEQRES 5 A 144 VAL LEU GLY GLU THR TRP THR LEU LEU ASN ARG ARG CYS SEQRES 6 A 144 GLY HIS ARG ALA ALA VAL ALA ALA ALA ALA ILE ARG LEU SEQRES 7 A 144 SER THR VAL VAL ARG VAL GLU HIS VAL THR ALA ASP LEU SEQRES 8 A 144 GLU GLU GLN ALA TRP GLU TRP LEU VAL ARG HIS ASP GLU SEQRES 9 A 144 ARG GLU TYR SER PHE VAL ASP ALA THR SER PHE ALA VAL SEQRES 10 A 144 MET ARG LYS LYS GLY ILE GLN ASN ALA TYR ALA PHE ASP SEQRES 11 A 144 GLY ASP PHE SER ALA ALA GLY PHE VAL GLU VAL ARG PRO SEQRES 12 A 144 GLU SEQRES 1 B 144 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ALA SEQRES 2 B 144 SER ILE PHE VAL ASP THR SER PHE TRP ALA ALA LEU GLY SEQRES 3 B 144 ASN ALA GLY ASP ALA ARG HIS GLY THR ALA LYS ARG LEU SEQRES 4 B 144 TRP ALA SER LYS PRO PRO VAL VAL MET THR SER ASN HIS SEQRES 5 B 144 VAL LEU GLY GLU THR TRP THR LEU LEU ASN ARG ARG CSO SEQRES 6 B 144 GLY HIS ARG ALA ALA VAL ALA ALA ALA ALA ILE ARG LEU SEQRES 7 B 144 SER THR VAL VAL ARG VAL GLU HIS VAL THR ALA ASP LEU SEQRES 8 B 144 GLU GLU GLN ALA TRP GLU TRP LEU VAL ARG HIS ASP GLU SEQRES 9 B 144 ARG GLU TYR SER PHE VAL ASP ALA THR SER PHE ALA VAL SEQRES 10 B 144 MET ARG LYS LYS GLY ILE GLN ASN ALA TYR ALA PHE ASP SEQRES 11 B 144 GLY ASP PHE SER ALA ALA GLY PHE VAL GLU VAL ARG PRO SEQRES 12 B 144 GLU MODRES 5WZF CSO B 52 CYS MODIFIED RESIDUE HET CSO B 52 7 HETNAM CSO S-HYDROXYCYSTEINE FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 HOH *261(H2 O) HELIX 1 AA1 ASP A 5 GLY A 13 1 9 HELIX 2 AA2 ARG A 19 SER A 29 1 11 HELIX 3 AA3 ASN A 38 CYS A 52 1 15 HELIX 4 AA4 GLY A 53 ILE A 63 1 11 HELIX 5 AA5 ARG A 64 SER A 66 5 3 HELIX 6 AA6 THR A 75 HIS A 89 1 15 HELIX 7 AA7 SER A 95 GLY A 109 1 15 HELIX 8 AA8 GLY A 118 ALA A 123 1 6 HELIX 9 AA9 ASP B 5 GLY B 13 1 9 HELIX 10 AB1 ARG B 19 SER B 29 1 11 HELIX 11 AB2 ASN B 38 CSO B 52 1 15 HELIX 12 AB3 GLY B 53 ALA B 62 1 10 HELIX 13 AB4 ILE B 63 SER B 66 5 4 HELIX 14 AB5 THR B 75 HIS B 89 1 15 HELIX 15 AB6 SER B 95 GLY B 109 1 15 HELIX 16 AB7 GLY B 118 ALA B 123 1 6 SHEET 1 AA1 5 VAL A 69 GLU A 72 0 SHEET 2 AA1 5 VAL A 34 SER A 37 1 N VAL A 34 O ARG A 70 SHEET 3 AA1 5 ILE A 2 VAL A 4 1 N ILE A 2 O MET A 35 SHEET 4 AA1 5 ASN A 112 TYR A 114 1 O TYR A 114 N PHE A 3 SHEET 5 AA1 5 VAL A 126 GLU A 127 1 O VAL A 126 N ALA A 113 SHEET 1 AA2 5 VAL B 69 GLU B 72 0 SHEET 2 AA2 5 VAL B 33 SER B 37 1 N VAL B 34 O ARG B 70 SHEET 3 AA2 5 SER B 1 VAL B 4 1 N VAL B 4 O MET B 35 SHEET 4 AA2 5 ASN B 112 TYR B 114 1 O TYR B 114 N PHE B 3 SHEET 5 AA2 5 VAL B 126 GLU B 127 1 O VAL B 126 N ALA B 113 LINK C AARG B 51 N CSO B 52 1555 1555 1.33 LINK C BARG B 51 N CSO B 52 1555 1555 1.33 LINK C CSO B 52 N GLY B 53 1555 1555 1.33 CRYST1 48.810 59.140 79.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012612 0.00000