PDB Short entry for 5X07 HEADER DNA BINDING PROTEIN/DNA 20-JAN-17 5X07 TITLE CRYSTAL STRUCTURE OF FOXA2 DNA BINDING DOMAIN BOUND TO A FULL TITLE 2 CONSENSUS DNA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*CP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*TP*TP*TP*G)- COMPND 3 3'); COMPND 4 CHAIN: D, A, G, J; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*AP*AP*AP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*GP*A)- COMPND 8 3'); COMPND 9 CHAIN: E, B, H, K; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 3-BETA; COMPND 13 CHAIN: F, C, I, L; COMPND 14 FRAGMENT: UNP RESIDUES 157-258; COMPND 15 SYNONYM: HNF-3B,FORKHEAD BOX PROTEIN A2,TRANSCRIPTION FACTOR 3B,TCF- COMPND 16 3B; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: FOXA2, HNF3B, TCF3B; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOXA2, FORKHEAD DOMAIN, CONSENSUS BINDING SITE, ISOTHERMAL TITRATION KEYWDS 2 CALORIMETRY, ITC, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,M.GUO,Z.ZHOU,L.JIANG,X.CHEN,L.QU,D.WU,Z.CHEN,L.CHEN,Y.CHEN REVDAT 2 27-SEP-17 5X07 1 REMARK LINK REVDAT 1 16-AUG-17 5X07 0 JRNL AUTH J.LI,A.C.D.MACHADO,M.GUO,J.M.SAGENDORF,Z.ZHOU,L.JIANG, JRNL AUTH 2 X.CHEN,D.WU,L.QU,Z.CHEN,L.CHEN,R.ROHS,Y.CHEN JRNL TITL STRUCTURE OF THE FORKHEAD DOMAIN OF FOXA2 BOUND TO A JRNL TITL 2 COMPLETE DNA CONSENSUS SITE JRNL REF BIOCHEMISTRY V. 56 3745 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28644006 JRNL DOI 10.1021/ACS.BIOCHEM.7B00211 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 23493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6390 - 6.7223 0.99 1632 151 0.1721 0.2076 REMARK 3 2 6.7223 - 5.3426 0.99 1601 149 0.2048 0.2436 REMARK 3 3 5.3426 - 4.6693 0.97 1550 144 0.2251 0.2494 REMARK 3 4 4.6693 - 4.2433 0.96 1510 140 0.2115 0.2504 REMARK 3 5 4.2433 - 3.9396 0.97 1563 144 0.2401 0.2905 REMARK 3 6 3.9396 - 3.7077 0.98 1552 145 0.2416 0.2722 REMARK 3 7 3.7077 - 3.5222 0.98 1546 142 0.2716 0.3049 REMARK 3 8 3.5222 - 3.3690 0.98 1537 144 0.2754 0.3233 REMARK 3 9 3.3690 - 3.2394 0.97 1529 140 0.2813 0.3193 REMARK 3 10 3.2394 - 3.1277 0.98 1544 145 0.3081 0.3763 REMARK 3 11 3.1277 - 3.0300 0.98 1572 144 0.3268 0.3799 REMARK 3 12 3.0300 - 2.9434 0.98 1545 145 0.3677 0.3750 REMARK 3 13 2.9434 - 2.8660 0.98 1538 142 0.3685 0.4296 REMARK 3 14 2.8660 - 2.7961 0.81 1280 119 0.3777 0.4107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5851 REMARK 3 ANGLE : 1.108 8464 REMARK 3 CHIRALITY : 0.042 900 REMARK 3 PLANARITY : 0.007 640 REMARK 3 DIHEDRAL : 28.852 2348 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 178.8931 40.3930 185.4466 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.5418 REMARK 3 T33: 0.4898 T12: 0.0158 REMARK 3 T13: -0.0171 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: -0.1341 L22: 0.2348 REMARK 3 L33: 0.1634 L12: -0.1802 REMARK 3 L13: -0.1647 L23: -0.1064 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.1745 S13: 0.0590 REMARK 3 S21: -0.1026 S22: 0.1313 S23: -0.0894 REMARK 3 S31: 0.0255 S32: -0.0465 S33: 0.2182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.796 REMARK 200 RESOLUTION RANGE LOW (A) : 33.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM MG (OAC)2, 50MM MES BUFFER, 16% REMARK 280 -20% PEG4K, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.56300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.96600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.56300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.96600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY F 240 REMARK 465 ASN F 241 REMARK 465 MET F 242 REMARK 465 PHE F 243 REMARK 465 GLU F 244 REMARK 465 ASN F 245 REMARK 465 GLY F 246 REMARK 465 CYS F 247 REMARK 465 TYR F 248 REMARK 465 LEU F 249 REMARK 465 ARG F 250 REMARK 465 ARG F 251 REMARK 465 GLN F 252 REMARK 465 LYS F 253 REMARK 465 ARG F 254 REMARK 465 PHE F 255 REMARK 465 LYS F 256 REMARK 465 CYS F 257 REMARK 465 GLU F 258 REMARK 465 SER C 239 REMARK 465 GLY C 240 REMARK 465 ASN C 241 REMARK 465 MET C 242 REMARK 465 PHE C 243 REMARK 465 GLU C 244 REMARK 465 ASN C 245 REMARK 465 GLY C 246 REMARK 465 CYS C 247 REMARK 465 TYR C 248 REMARK 465 LEU C 249 REMARK 465 ARG C 250 REMARK 465 ARG C 251 REMARK 465 GLN C 252 REMARK 465 LYS C 253 REMARK 465 ARG C 254 REMARK 465 PHE C 255 REMARK 465 LYS C 256 REMARK 465 CYS C 257 REMARK 465 GLU C 258 REMARK 465 GLY I 155 REMARK 465 PRO I 156 REMARK 465 SER I 239 REMARK 465 GLY I 240 REMARK 465 ASN I 241 REMARK 465 MET I 242 REMARK 465 PHE I 243 REMARK 465 GLU I 244 REMARK 465 ASN I 245 REMARK 465 GLY I 246 REMARK 465 CYS I 247 REMARK 465 TYR I 248 REMARK 465 LEU I 249 REMARK 465 ARG I 250 REMARK 465 ARG I 251 REMARK 465 GLN I 252 REMARK 465 LYS I 253 REMARK 465 ARG I 254 REMARK 465 PHE I 255 REMARK 465 LYS I 256 REMARK 465 CYS I 257 REMARK 465 GLU I 258 REMARK 465 GLY L 240 REMARK 465 ASN L 241 REMARK 465 MET L 242 REMARK 465 PHE L 243 REMARK 465 GLU L 244 REMARK 465 ASN L 245 REMARK 465 GLY L 246 REMARK 465 CYS L 247 REMARK 465 TYR L 248 REMARK 465 LEU L 249 REMARK 465 ARG L 250 REMARK 465 ARG L 251 REMARK 465 GLN L 252 REMARK 465 LYS L 253 REMARK 465 ARG L 254 REMARK 465 PHE L 255 REMARK 465 LYS L 256 REMARK 465 CYS L 257 REMARK 465 GLU L 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC E 12 CG GLN C 198 1.74 REMARK 500 C PRO I 237 OD1 ASP I 238 1.76 REMARK 500 O ILE C 172 OG SER C 175 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C2 DT D 1 C2 DA H 16 47410 0.32 REMARK 500 C6 DA E 16 O4 DT G 1 47410 0.35 REMARK 500 O4 DT D 1 N7 DA H 16 47410 0.45 REMARK 500 C8 DA E 16 C7 DT G 1 47410 0.47 REMARK 500 O3' DA E 16 O5' DT G 1 47410 0.49 REMARK 500 C4 DT D 1 C5 DA H 16 47410 0.53 REMARK 500 C2 DA E 16 N3 DT G 1 47410 0.67 REMARK 500 N3 DA E 16 N3 DT G 1 47410 0.69 REMARK 500 C5 DT D 1 C4 DA H 16 47410 0.70 REMARK 500 C4 DA E 16 C5 DT G 1 47410 0.77 REMARK 500 C7 DT D 1 N9 DA H 16 47410 0.79 REMARK 500 N9 DA E 16 C5 DT G 1 47410 0.82 REMARK 500 C7 DT D 1 C1' DA H 16 47410 0.83 REMARK 500 C6 DT D 1 N3 DA H 16 47410 0.84 REMARK 500 N1 DT D 1 N3 DA H 16 47410 0.84 REMARK 500 N9 DA E 16 C6 DT G 1 47410 0.85 REMARK 500 N7 DA E 16 C7 DT G 1 47410 0.85 REMARK 500 C5 DT D 1 N9 DA H 16 47410 0.87 REMARK 500 C4 DT D 1 C4 DA H 16 47410 0.88 REMARK 500 N3 DT D 1 C6 DA H 16 47410 0.89 REMARK 500 C4 DA E 16 C4 DT G 1 47410 0.91 REMARK 500 C5 DA E 16 C4 DT G 1 47410 0.97 REMARK 500 N3 DA E 16 C2 DT G 1 47410 0.97 REMARK 500 O4 DT D 1 C5 DA H 16 47410 1.01 REMARK 500 C2 DT D 1 N1 DA H 16 47410 1.03 REMARK 500 N1 DT D 1 C2 DA H 16 47410 1.07 REMARK 500 C5 DA E 16 O4 DT G 1 47410 1.08 REMARK 500 N3 DT D 1 N1 DA H 16 47410 1.11 REMARK 500 O3' DA E 16 C5' DT G 1 47410 1.11 REMARK 500 C1' DA E 16 C6 DT G 1 47410 1.12 REMARK 500 N1 DA E 16 N6 DA H 16 47410 1.12 REMARK 500 N3 DT D 1 C5 DA H 16 47410 1.27 REMARK 500 O2 DT D 1 N1 DA H 16 47410 1.29 REMARK 500 C3' DA E 16 O5' DT G 1 47410 1.29 REMARK 500 C5 DA E 16 C5 DT G 1 47410 1.39 REMARK 500 O2 DT D 1 C2 DA H 16 47410 1.40 REMARK 500 C8 DA E 16 C5 DT G 1 47410 1.44 REMARK 500 N1 DA E 16 O4 DT G 1 47410 1.49 REMARK 500 C4 DA E 16 C6 DT G 1 47410 1.49 REMARK 500 C6 DA E 16 C4 DT G 1 47410 1.50 REMARK 500 C6 DT D 1 C4 DA H 16 47410 1.52 REMARK 500 N3 DA E 16 C4 DT G 1 47410 1.52 REMARK 500 O4 DT D 1 C8 DA H 16 47410 1.53 REMARK 500 N3 DT D 1 C2 DA H 16 47410 1.54 REMARK 500 C4 DT D 1 N7 DA H 16 47410 1.56 REMARK 500 C2 DT D 1 N3 DA H 16 47410 1.57 REMARK 500 C5 DT D 1 N3 DA H 16 47410 1.57 REMARK 500 N6 DA E 16 O4 DT G 1 47410 1.58 REMARK 500 C4 DA E 16 N3 DT G 1 47410 1.62 REMARK 500 N3 DA E 16 N1 DT G 1 47410 1.65 REMARK 500 REMARK 500 THIS ENTRY HAS 90 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 15 O3' DG E 15 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG A 16 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 PRO C 176 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO C 224 C - N - CD ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO C 237 C - N - CD ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO I 224 C - N - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 DT J 15 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS F 219 77.18 77.60 REMARK 500 ARG F 222 -82.87 -68.03 REMARK 500 SER F 223 -92.79 -164.86 REMARK 500 ASP F 225 -86.25 -65.96 REMARK 500 SER C 175 -179.68 -54.64 REMARK 500 LYS C 219 74.86 80.82 REMARK 500 ARG C 222 -69.48 -93.12 REMARK 500 SER C 223 11.42 -171.52 REMARK 500 ASP C 225 -97.80 -63.75 REMARK 500 LYS C 226 127.70 13.34 REMARK 500 ALA I 158 -174.23 -65.83 REMARK 500 LYS I 219 76.32 75.78 REMARK 500 SER I 223 -53.18 -142.65 REMARK 500 LYS I 226 -18.12 71.74 REMARK 500 PRO I 237 -11.49 -49.97 REMARK 500 LYS L 219 78.84 78.70 REMARK 500 SER L 223 -45.67 -144.50 REMARK 500 PRO L 237 -9.90 -44.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 5X07 D 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 E 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 F 157 258 UNP Q9Y261 FOXA2_HUMAN 157 258 DBREF 5X07 A 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 B 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 C 157 258 UNP Q9Y261 FOXA2_HUMAN 157 258 DBREF 5X07 G 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 H 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 I 157 258 UNP Q9Y261 FOXA2_HUMAN 157 258 DBREF 5X07 J 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 K 1 16 PDB 5X07 5X07 1 16 DBREF 5X07 L 157 258 UNP Q9Y261 FOXA2_HUMAN 157 258 SEQADV 5X07 GLY F 155 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 PRO F 156 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 GLY C 155 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 PRO C 156 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 GLY I 155 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 PRO I 156 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 GLY L 155 UNP Q9Y261 EXPRESSION TAG SEQADV 5X07 PRO L 156 UNP Q9Y261 EXPRESSION TAG SEQRES 1 D 16 DT DC DT DT DG DT DT DT DA DC DA DT DT SEQRES 2 D 16 DT DT DG SEQRES 1 E 16 DC DA DA DA DA DT DG DT DA DA DA DC DA SEQRES 2 E 16 DA DG DA SEQRES 1 F 104 GLY PRO HIS ALA LYS PRO PRO TYR SER TYR ILE SER LEU SEQRES 2 F 104 ILE THR MET ALA ILE GLN GLN SER PRO ASN LYS MET LEU SEQRES 3 F 104 THR LEU SER GLU ILE TYR GLN TRP ILE MET ASP LEU PHE SEQRES 4 F 104 PRO PHE TYR ARG GLN ASN GLN GLN ARG TRP GLN ASN SER SEQRES 5 F 104 ILE ARG HIS SER LEU SER PHE ASN ASP CYS PHE LEU LYS SEQRES 6 F 104 VAL PRO ARG SER PRO ASP LYS PRO GLY LYS GLY SER PHE SEQRES 7 F 104 TRP THR LEU HIS PRO ASP SER GLY ASN MET PHE GLU ASN SEQRES 8 F 104 GLY CYS TYR LEU ARG ARG GLN LYS ARG PHE LYS CYS GLU SEQRES 1 A 16 DT DC DT DT DG DT DT DT DA DC DA DT DT SEQRES 2 A 16 DT DT DG SEQRES 1 B 16 DC DA DA DA DA DT DG DT DA DA DA DC DA SEQRES 2 B 16 DA DG DA SEQRES 1 C 104 GLY PRO HIS ALA LYS PRO PRO TYR SER TYR ILE SER LEU SEQRES 2 C 104 ILE THR MET ALA ILE GLN GLN SER PRO ASN LYS MET LEU SEQRES 3 C 104 THR LEU SER GLU ILE TYR GLN TRP ILE MET ASP LEU PHE SEQRES 4 C 104 PRO PHE TYR ARG GLN ASN GLN GLN ARG TRP GLN ASN SER SEQRES 5 C 104 ILE ARG HIS SER LEU SER PHE ASN ASP CYS PHE LEU LYS SEQRES 6 C 104 VAL PRO ARG SER PRO ASP LYS PRO GLY LYS GLY SER PHE SEQRES 7 C 104 TRP THR LEU HIS PRO ASP SER GLY ASN MET PHE GLU ASN SEQRES 8 C 104 GLY CYS TYR LEU ARG ARG GLN LYS ARG PHE LYS CYS GLU SEQRES 1 G 16 DT DC DT DT DG DT DT DT DA DC DA DT DT SEQRES 2 G 16 DT DT DG SEQRES 1 H 16 DC DA DA DA DA DT DG DT DA DA DA DC DA SEQRES 2 H 16 DA DG DA SEQRES 1 I 104 GLY PRO HIS ALA LYS PRO PRO TYR SER TYR ILE SER LEU SEQRES 2 I 104 ILE THR MET ALA ILE GLN GLN SER PRO ASN LYS MET LEU SEQRES 3 I 104 THR LEU SER GLU ILE TYR GLN TRP ILE MET ASP LEU PHE SEQRES 4 I 104 PRO PHE TYR ARG GLN ASN GLN GLN ARG TRP GLN ASN SER SEQRES 5 I 104 ILE ARG HIS SER LEU SER PHE ASN ASP CYS PHE LEU LYS SEQRES 6 I 104 VAL PRO ARG SER PRO ASP LYS PRO GLY LYS GLY SER PHE SEQRES 7 I 104 TRP THR LEU HIS PRO ASP SER GLY ASN MET PHE GLU ASN SEQRES 8 I 104 GLY CYS TYR LEU ARG ARG GLN LYS ARG PHE LYS CYS GLU SEQRES 1 J 16 DT DC DT DT DG DT DT DT DA DC DA DT DT SEQRES 2 J 16 DT DT DG SEQRES 1 K 16 DC DA DA DA DA DT DG DT DA DA DA DC DA SEQRES 2 K 16 DA DG DA SEQRES 1 L 104 GLY PRO HIS ALA LYS PRO PRO TYR SER TYR ILE SER LEU SEQRES 2 L 104 ILE THR MET ALA ILE GLN GLN SER PRO ASN LYS MET LEU SEQRES 3 L 104 THR LEU SER GLU ILE TYR GLN TRP ILE MET ASP LEU PHE SEQRES 4 L 104 PRO PHE TYR ARG GLN ASN GLN GLN ARG TRP GLN ASN SER SEQRES 5 L 104 ILE ARG HIS SER LEU SER PHE ASN ASP CYS PHE LEU LYS SEQRES 6 L 104 VAL PRO ARG SER PRO ASP LYS PRO GLY LYS GLY SER PHE SEQRES 7 L 104 TRP THR LEU HIS PRO ASP SER GLY ASN MET PHE GLU ASN SEQRES 8 L 104 GLY CYS TYR LEU ARG ARG GLN LYS ARG PHE LYS CYS GLU HELIX 1 AA1 SER F 163 GLN F 174 1 12 HELIX 2 AA2 THR F 181 PHE F 193 1 13 HELIX 3 AA3 PRO F 194 GLN F 198 5 5 HELIX 4 AA4 ASN F 199 ASN F 214 1 16 HELIX 5 AA5 SER C 163 SER C 175 1 13 HELIX 6 AA6 THR C 181 PHE C 193 1 13 HELIX 7 AA7 PRO C 194 GLN C 198 5 5 HELIX 8 AA8 ASN C 199 ASN C 214 1 16 HELIX 9 AA9 SER I 163 GLN I 174 1 12 HELIX 10 AB1 LEU I 182 PHE I 193 1 12 HELIX 11 AB2 PRO I 194 GLN I 198 5 5 HELIX 12 AB3 ASN I 199 ASN I 214 1 16 HELIX 13 AB4 SER L 163 SER L 175 1 13 HELIX 14 AB5 LEU L 182 PHE L 193 1 12 HELIX 15 AB6 PRO L 194 GLN L 198 5 5 HELIX 16 AB7 ASN L 199 ASN L 214 1 16 SHEET 1 AA1 3 MET F 179 LEU F 180 0 SHEET 2 AA1 3 PHE F 232 LEU F 235 -1 O TRP F 233 N LEU F 180 SHEET 3 AA1 3 PHE F 217 VAL F 220 -1 N LEU F 218 O THR F 234 SHEET 1 AA2 2 PHE C 217 VAL C 220 0 SHEET 2 AA2 2 PHE C 232 LEU C 235 -1 O THR C 234 N LEU C 218 SHEET 1 AA3 3 MET I 179 THR I 181 0 SHEET 2 AA3 3 PHE I 232 LEU I 235 -1 O TRP I 233 N LEU I 180 SHEET 3 AA3 3 PHE I 217 VAL I 220 -1 N LEU I 218 O THR I 234 SHEET 1 AA4 3 MET L 179 THR L 181 0 SHEET 2 AA4 3 PHE L 232 LEU L 235 -1 O TRP L 233 N LEU L 180 SHEET 3 AA4 3 PHE L 217 VAL L 220 -1 N LEU L 218 O THR L 234 LINK OP1 DC E 12 CB GLN C 198 1555 1555 1.39 LINK CE1 PHE I 195 OP1 DA J 9 1555 1555 1.39 CISPEP 1 LEU F 218 LYS F 219 0 26.55 CISPEP 2 ARG F 222 SER F 223 0 1.02 CISPEP 3 PRO F 227 GLY F 228 0 -4.35 CISPEP 4 LEU C 218 LYS C 219 0 28.68 CISPEP 5 ARG C 222 SER C 223 0 -15.95 CISPEP 6 PRO C 227 GLY C 228 0 -8.57 CISPEP 7 LEU I 218 LYS I 219 0 25.20 CISPEP 8 ARG I 222 SER I 223 0 -7.98 CISPEP 9 PRO I 227 GLY I 228 0 -0.40 CISPEP 10 LEU L 218 LYS L 219 0 26.19 CISPEP 11 ARG L 222 SER L 223 0 -7.78 CISPEP 12 PRO L 227 GLY L 228 0 -4.33 CRYST1 195.126 71.932 72.155 90.00 103.14 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005125 0.000000 0.001196 0.00000 SCALE2 0.000000 0.013902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014232 0.00000