PDB Short entry for 5XB3 HEADER TRANSFERASE 15-MAR-17 5XB3 TITLE ADP-DTMP BOUND CRYSTAL STRUCTURE OF THYMIDYLATE KINASE (AQ_969) FROM TITLE 2 AQUIFEX AEOLICUS VF5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5); SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: TMK, AQ_969; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, COMPLEX, NUCLEOTIDE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BISWAS,J.JEYAKANTHAN,K.SEKAR REVDAT 4 22-NOV-23 5XB3 1 REMARK REVDAT 3 30-AUG-17 5XB3 1 JRNL REVDAT 2 16-AUG-17 5XB3 1 JRNL REVDAT 1 28-JUN-17 5XB3 0 JRNL AUTH A.BISWAS,A.SHUKLA,S.K.CHAUDHARY,R.SANTHOSH,J.JEYAKANTHAN, JRNL AUTH 2 K.SEKAR JRNL TITL STRUCTURAL STUDIES OF A HYPERTHERMOPHILIC THYMIDYLATE KINASE JRNL TITL 2 ENZYME REVEAL CONFORMATIONAL SUBSTATES ALONG THE REACTION JRNL TITL 3 COORDINATE JRNL REF FEBS J. V. 284 2527 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28627020 JRNL DOI 10.1111/FEBS.14140 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 37728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 1.13000 REMARK 3 B23 (A**2) : 1.59000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3279 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3242 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4432 ; 2.082 ; 2.041 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7498 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 5.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;37.841 ;24.861 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;14.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3543 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 668 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 1.749 ; 1.855 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1563 ; 1.740 ; 1.853 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 2.423 ; 2.771 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1957 ; 2.423 ; 2.773 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 2.842 ; 2.147 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1711 ; 2.826 ; 2.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2462 ; 4.242 ; 3.090 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3792 ; 5.092 ;22.338 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3725 ; 5.026 ;22.009 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 53.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3350, PH 7.0, MICROBATCH, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 194 REMARK 465 VAL A 195 REMARK 465 VAL B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 NZ REMARK 470 LYS A 41 NZ REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 LYS A 122 CE NZ REMARK 470 ARG A 138 CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 143 CD CE NZ REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 VAL A 192 CG1 CG2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 LYS B 25 NZ REMARK 470 GLU B 54 CD OE1 OE2 REMARK 470 ARG B 82 NE CZ NH1 NH2 REMARK 470 LYS B 122 CE NZ REMARK 470 ASP B 134 OD1 OD2 REMARK 470 ARG B 138 CD NE CZ NH1 NH2 REMARK 470 GLU B 167 OE1 OE2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 364 O HOH B 383 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 180 CD GLU B 180 OE1 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -55.74 -121.31 REMARK 500 ARG A 90 144.60 88.86 REMARK 500 PHE A 91 -146.08 -153.59 REMARK 500 LYS B 75 -50.88 -129.04 REMARK 500 ARG B 90 146.10 89.62 REMARK 500 PHE B 91 -146.17 -157.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 433 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 449 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAI RELATED DB: PDB REMARK 900 RELATED ID: 5XB2 RELATED DB: PDB REMARK 900 RELATED ID: 5XB5 RELATED DB: PDB REMARK 900 RELATED ID: 5XBH RELATED DB: PDB DBREF 5XB3 A 1 195 UNP O67099 KTHY_AQUAE 1 195 DBREF 5XB3 B 1 195 UNP O67099 KTHY_AQUAE 1 195 SEQRES 1 A 195 MET LEU ILE ALA PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 A 195 THR THR GLN ALA LYS LYS LEU TYR GLU TYR LEU LYS GLN SEQRES 3 A 195 LYS GLY TYR PHE VAL SER LEU TYR ARG GLU PRO GLY GLY SEQRES 4 A 195 THR LYS VAL GLY GLU VAL LEU ARG GLU ILE LEU LEU THR SEQRES 5 A 195 GLU GLU LEU ASP GLU ARG THR GLU LEU LEU LEU PHE GLU SEQRES 6 A 195 ALA SER ARG SER LYS LEU ILE GLU GLU LYS ILE ILE PRO SEQRES 7 A 195 ASP LEU LYS ARG ASP LYS VAL VAL ILE LEU ASP ARG PHE SEQRES 8 A 195 VAL LEU SER THR ILE ALA TYR GLN GLY TYR GLY LYS GLY SEQRES 9 A 195 LEU ASP VAL GLU PHE ILE LYS ASN LEU ASN GLU PHE ALA SEQRES 10 A 195 THR ARG GLY VAL LYS PRO ASP ILE THR LEU LEU LEU ASP SEQRES 11 A 195 ILE PRO VAL ASP ILE ALA LEU ARG ARG LEU LYS GLU LYS SEQRES 12 A 195 ASN ARG PHE GLU ASN LYS GLU PHE LEU GLU LYS VAL ARG SEQRES 13 A 195 LYS GLY PHE LEU GLU LEU ALA LYS GLU GLU GLU ASN VAL SEQRES 14 A 195 VAL VAL ILE ASP ALA SER GLY GLU GLU GLU GLU VAL PHE SEQRES 15 A 195 LYS GLU ILE LEU ARG ALA LEU SER GLY VAL LEU ARG VAL SEQRES 1 B 195 MET LEU ILE ALA PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 B 195 THR THR GLN ALA LYS LYS LEU TYR GLU TYR LEU LYS GLN SEQRES 3 B 195 LYS GLY TYR PHE VAL SER LEU TYR ARG GLU PRO GLY GLY SEQRES 4 B 195 THR LYS VAL GLY GLU VAL LEU ARG GLU ILE LEU LEU THR SEQRES 5 B 195 GLU GLU LEU ASP GLU ARG THR GLU LEU LEU LEU PHE GLU SEQRES 6 B 195 ALA SER ARG SER LYS LEU ILE GLU GLU LYS ILE ILE PRO SEQRES 7 B 195 ASP LEU LYS ARG ASP LYS VAL VAL ILE LEU ASP ARG PHE SEQRES 8 B 195 VAL LEU SER THR ILE ALA TYR GLN GLY TYR GLY LYS GLY SEQRES 9 B 195 LEU ASP VAL GLU PHE ILE LYS ASN LEU ASN GLU PHE ALA SEQRES 10 B 195 THR ARG GLY VAL LYS PRO ASP ILE THR LEU LEU LEU ASP SEQRES 11 B 195 ILE PRO VAL ASP ILE ALA LEU ARG ARG LEU LYS GLU LYS SEQRES 12 B 195 ASN ARG PHE GLU ASN LYS GLU PHE LEU GLU LYS VAL ARG SEQRES 13 B 195 LYS GLY PHE LEU GLU LEU ALA LYS GLU GLU GLU ASN VAL SEQRES 14 B 195 VAL VAL ILE ASP ALA SER GLY GLU GLU GLU GLU VAL PHE SEQRES 15 B 195 LYS GLU ILE LEU ARG ALA LEU SER GLY VAL LEU ARG VAL HET ADP A 201 27 HET TMP A 202 21 HET ADP B 201 27 HET TMP B 202 21 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TMP THYMIDINE-5'-PHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 TMP 2(C10 H15 N2 O8 P) FORMUL 7 HOH *283(H2 O) HELIX 1 AA1 GLY A 12 LYS A 27 1 16 HELIX 2 AA2 THR A 40 GLU A 53 1 14 HELIX 3 AA3 ASP A 56 LYS A 75 1 20 HELIX 4 AA4 LYS A 75 ARG A 82 1 8 HELIX 5 AA5 PHE A 91 GLY A 100 1 10 HELIX 6 AA6 ASP A 106 ARG A 119 1 14 HELIX 7 AA7 PRO A 132 GLU A 142 1 11 HELIX 8 AA8 ASN A 148 GLU A 166 1 19 HELIX 9 AA9 GLU A 177 GLY A 191 1 15 HELIX 10 AB1 GLY B 12 LYS B 27 1 16 HELIX 11 AB2 THR B 40 GLU B 53 1 14 HELIX 12 AB3 ASP B 56 LYS B 75 1 20 HELIX 13 AB4 LYS B 75 ARG B 82 1 8 HELIX 14 AB5 PHE B 91 GLY B 100 1 10 HELIX 15 AB6 ASP B 106 ARG B 119 1 14 HELIX 16 AB7 PRO B 132 GLU B 142 1 11 HELIX 17 AB8 ASN B 148 GLU B 166 1 19 HELIX 18 AB9 GLU B 177 GLY B 191 1 15 SHEET 1 AA1 5 VAL A 31 ARG A 35 0 SHEET 2 AA1 5 VAL A 85 ASP A 89 1 O ASP A 89 N TYR A 34 SHEET 3 AA1 5 LEU A 2 GLU A 6 1 N ILE A 3 O VAL A 86 SHEET 4 AA1 5 ILE A 125 ASP A 130 1 O LEU A 127 N ALA A 4 SHEET 5 AA1 5 VAL A 169 ASP A 173 1 O ILE A 172 N LEU A 128 SHEET 1 AA2 5 VAL B 31 ARG B 35 0 SHEET 2 AA2 5 VAL B 85 ASP B 89 1 O ASP B 89 N TYR B 34 SHEET 3 AA2 5 LEU B 2 GLU B 6 1 N PHE B 5 O LEU B 88 SHEET 4 AA2 5 ILE B 125 ASP B 130 1 O LEU B 127 N ALA B 4 SHEET 5 AA2 5 VAL B 169 ASP B 173 1 O ILE B 172 N LEU B 128 CISPEP 1 GLU A 36 PRO A 37 0 -11.17 CISPEP 2 GLU A 36 PRO A 37 0 -9.91 CISPEP 3 GLU B 36 PRO B 37 0 -13.98 SITE 1 AC1 16 GLY A 10 SER A 11 GLY A 12 LYS A 13 SITE 2 AC1 16 THR A 14 THR A 15 ARG A 139 ARG A 145 SITE 3 AC1 16 GLY A 176 GLU A 177 GLU A 178 HOH A 323 SITE 4 AC1 16 HOH A 339 HOH A 357 HOH A 376 HOH A 388 SITE 1 AC2 14 ASP A 9 GLU A 36 ARG A 47 PHE A 64 SITE 2 AC2 14 ARG A 90 THR A 95 TYR A 98 GLN A 99 SITE 3 AC2 14 HOH A 323 HOH A 339 HOH A 359 HOH A 363 SITE 4 AC2 14 HOH A 397 HOH A 402 SITE 1 AC3 20 GLY B 10 SER B 11 GLY B 12 LYS B 13 SITE 2 AC3 20 THR B 14 THR B 15 ARG B 139 LYS B 143 SITE 3 AC3 20 ARG B 145 GLY B 176 GLU B 177 GLU B 178 SITE 4 AC3 20 HOH B 303 HOH B 311 HOH B 340 HOH B 346 SITE 5 AC3 20 HOH B 352 HOH B 359 HOH B 360 HOH B 379 SITE 1 AC4 17 ASP B 9 GLU B 36 ARG B 47 PHE B 64 SITE 2 AC4 17 ARG B 90 THR B 95 TYR B 98 GLN B 99 SITE 3 AC4 17 ARG B 145 HOH B 301 HOH B 340 HOH B 352 SITE 4 AC4 17 HOH B 358 HOH B 378 HOH B 384 HOH B 393 SITE 5 AC4 17 HOH B 406 CRYST1 42.540 52.980 53.780 90.97 90.69 109.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023507 0.008371 0.000470 0.00000 SCALE2 0.000000 0.020036 0.000446 0.00000 SCALE3 0.000000 0.000000 0.018600 0.00000