PDB Short entry for 5XJL HEADER SPLICING 02-MAY-17 5XJL TITLE CRYSTAL STRUCTURE OF THE GEMIN2-BINDING DOMAIN OF SMN, GEMIN2 IN TITLE 2 COMPLEX WITH SMD1/D2/F/E/G FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEM-ASSOCIATED PROTEIN 2; COMPND 3 CHAIN: 2; COMPND 4 SYNONYM: GEMIN-2,COMPONENT OF GEMS 2,SURVIVAL OF MOTOR NEURON COMPND 5 PROTEIN-INTERACTING PROTEIN 1,SMN-INTERACTING PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: SM-D1,SM-D AUTOANTIGEN,SNRNP CORE PROTEIN D1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: SM-D2,SNRNP CORE PROTEIN D2; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN E; COMPND 19 CHAIN: E; COMPND 20 SYNONYM: SNRNP-E,SM PROTEIN E,SME; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN F; COMPND 24 CHAIN: F; COMPND 25 SYNONYM: SNRNP-F,SM PROTEIN F,SMF; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN G; COMPND 29 CHAIN: G; COMPND 30 SYNONYM: SNRNP-G,SM PROTEIN G,SMG; COMPND 31 ENGINEERED: YES; COMPND 32 MOL_ID: 7; COMPND 33 MOLECULE: SURVIVAL MOTOR NEURON PROTEIN; COMPND 34 CHAIN: M; COMPND 35 SYNONYM: COMPONENT OF GEMS 1,GEMIN-1; COMPND 36 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GEMIN2, SIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SNRPD1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SNRPD2, SNRPD1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: SNRPE; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 GENE: SNRPF, PBSCF; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 GENE: SNRPG, PBSCG; SOURCE 41 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 43 MOL_ID: 7; SOURCE 44 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 45 ORGANISM_COMMON: HUMAN; SOURCE 46 ORGANISM_TAXID: 9606; SOURCE 47 GENE: SMN1, SMN, SMNT, SMN2, SMNC; SOURCE 48 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 49 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG REVDAT 2 27-MAR-24 5XJL 1 REMARK REVDAT 1 02-MAY-18 5XJL 0 SPRSDE 02-MAY-18 5XJL 3S6N JRNL AUTH R.ZHANG,B.R.SO,P.LI,J.YONG,T.GLISOVIC,L.WAN,G.DREYFUSS JRNL TITL STRUCTURE OF A KEY INTERMEDIATE OF THE SMN COMPLEX REVEALS JRNL TITL 2 GEMIN2'S CRUCIAL FUNCTION IN SNRNP ASSEMBLY JRNL REF CELL V. 146 384 2011 JRNL REFN ISSN 1097-4172 JRNL PMID 21816274 JRNL DOI 10.1016/J.CELL.2011.06.043 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 18815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.311 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5XJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99993 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 59.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1%PEG8000, 100MM TRIS-HCL, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 2, A, B, E, F, G, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 2 1 REMARK 465 ARG 2 2 REMARK 465 ARG 2 3 REMARK 465 ALA 2 4 REMARK 465 GLU 2 5 REMARK 465 LEU 2 6 REMARK 465 ALA 2 7 REMARK 465 GLY 2 8 REMARK 465 LEU 2 9 REMARK 465 LYS 2 10 REMARK 465 THR 2 11 REMARK 465 MET 2 12 REMARK 465 ALA 2 13 REMARK 465 TRP 2 14 REMARK 465 VAL 2 15 REMARK 465 PRO 2 16 REMARK 465 ALA 2 17 REMARK 465 GLU 2 18 REMARK 465 SER 2 19 REMARK 465 ALA 2 20 REMARK 465 VAL 2 21 REMARK 465 GLU 2 32 REMARK 465 PRO 2 33 REMARK 465 CYS 2 34 REMARK 465 ASP 2 35 REMARK 465 LEU 2 36 REMARK 465 THR 2 37 REMARK 465 GLU 2 38 REMARK 465 GLY 2 39 REMARK 465 PHE 2 40 REMARK 465 ASP 2 41 REMARK 465 PRO 2 42 REMARK 465 SER 2 43 REMARK 465 VAL 2 44 REMARK 465 PRO 2 45 REMARK 465 PRO 2 46 REMARK 465 ARG 2 47 REMARK 465 LYS 2 74 REMARK 465 LYS 2 75 REMARK 465 LEU 2 76 REMARK 465 LYS 2 77 REMARK 465 ARG 2 78 REMARK 465 LYS 2 125 REMARK 465 SER 2 126 REMARK 465 GLN 2 127 REMARK 465 GLN 2 128 REMARK 465 LEU 2 129 REMARK 465 ASP 2 130 REMARK 465 SER 2 131 REMARK 465 ASN 2 132 REMARK 465 VAL 2 133 REMARK 465 THR 2 134 REMARK 465 LYS 2 152 REMARK 465 LEU 2 153 REMARK 465 CYS 2 154 REMARK 465 ALA 2 155 REMARK 465 ASP 2 156 REMARK 465 GLY 2 157 REMARK 465 ALA 2 158 REMARK 465 VAL 2 159 REMARK 465 GLY 2 160 REMARK 465 PRO 2 161 REMARK 465 ALA 2 162 REMARK 465 THR 2 163 REMARK 465 ASN 2 164 REMARK 465 GLU 2 165 REMARK 465 SER 2 166 REMARK 465 PRO 2 167 REMARK 465 GLY 2 168 REMARK 465 ILE 2 169 REMARK 465 ASP 2 170 REMARK 465 TYR 2 171 REMARK 465 VAL 2 172 REMARK 465 GLN 2 173 REMARK 465 PRO 2 279 REMARK 465 SER 2 280 REMARK 465 ASP A 82 REMARK 465 VAL A 83 REMARK 465 GLU A 84 REMARK 465 PRO A 85 REMARK 465 LYS A 86 REMARK 465 VAL A 87 REMARK 465 LYS A 88 REMARK 465 SER A 89 REMARK 465 LYS A 90 REMARK 465 LYS A 91 REMARK 465 ARG A 92 REMARK 465 GLU A 93 REMARK 465 ALA A 94 REMARK 465 VAL A 95 REMARK 465 ALA A 96 REMARK 465 GLY A 97 REMARK 465 ARG A 98 REMARK 465 GLY A 99 REMARK 465 ARG A 100 REMARK 465 GLY A 101 REMARK 465 ARG A 102 REMARK 465 GLY A 103 REMARK 465 ARG A 104 REMARK 465 GLY A 105 REMARK 465 ARG A 106 REMARK 465 GLY A 107 REMARK 465 ARG A 108 REMARK 465 GLY A 109 REMARK 465 ARG A 110 REMARK 465 GLY A 111 REMARK 465 ARG A 112 REMARK 465 GLY A 113 REMARK 465 ARG A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 ARG A 118 REMARK 465 ARG A 119 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 GLU B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 PRO B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 LYS B 18 REMARK 465 ARG B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 PRO B 78 REMARK 465 LYS B 79 REMARK 465 SER B 80 REMARK 465 GLY B 81 REMARK 465 LYS B 82 REMARK 465 GLY B 83 REMARK 465 LYS B 84 REMARK 465 LYS B 85 REMARK 465 LYS B 86 REMARK 465 SER B 87 REMARK 465 LYS B 88 REMARK 465 LYS B 118 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 TYR E 3 REMARK 465 ARG E 4 REMARK 465 GLY E 5 REMARK 465 GLN E 6 REMARK 465 GLY E 7 REMARK 465 GLN E 8 REMARK 465 LYS E 9 REMARK 465 VAL E 10 REMARK 465 GLN E 11 REMARK 465 LYS E 12 REMARK 465 VAL E 13 REMARK 465 SER E 91 REMARK 465 ASN E 92 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLU F 77 REMARK 465 GLU F 78 REMARK 465 GLU F 79 REMARK 465 GLU F 80 REMARK 465 ASP F 81 REMARK 465 GLY F 82 REMARK 465 GLU F 83 REMARK 465 MET F 84 REMARK 465 ARG F 85 REMARK 465 GLU F 86 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 LYS G 3 REMARK 465 ALA G 4 REMARK 465 HIS G 5 REMARK 465 PRO G 6 REMARK 465 PRO G 7 REMARK 465 GLN G 53 REMARK 465 GLN G 54 REMARK 465 LEU G 73 REMARK 465 GLU G 74 REMARK 465 ARG G 75 REMARK 465 VAL G 76 REMARK 465 GLY M 26 REMARK 465 GLN M 27 REMARK 465 SER M 28 REMARK 465 ASP M 29 REMARK 465 ASP M 30 REMARK 465 SER M 31 REMARK 465 ASP M 32 REMARK 465 ILE M 33 REMARK 465 TRP M 34 REMARK 465 HIS M 52 REMARK 465 ALA M 53 REMARK 465 LEU M 54 REMARK 465 LYS M 55 REMARK 465 ASN M 56 REMARK 465 GLY M 57 REMARK 465 ASP M 58 REMARK 465 ILE M 59 REMARK 465 CYS M 60 REMARK 465 GLU M 61 REMARK 465 THR M 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU 2 94 CG CD OE1 OE2 REMARK 470 LEU F 3 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO 2 225 C - N - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG 2 121 3.72 -65.68 REMARK 500 HIS 2 123 24.49 -68.66 REMARK 500 HIS A 12 -8.00 79.01 REMARK 500 MET A 36 15.96 85.81 REMARK 500 ASN B 48 -32.43 -38.74 REMARK 500 GLU B 76 173.27 178.82 REMARK 500 ILE B 107 -64.94 -102.89 REMARK 500 LYS E 67 -9.17 77.00 REMARK 500 MET F 40 30.84 71.88 REMARK 500 ASP F 52 19.79 54.23 REMARK 500 MET G 38 3.95 82.17 REMARK 500 ALA G 49 -113.12 -59.16 REMARK 500 SER G 51 61.20 -109.80 REMARK 500 SER G 66 -37.15 74.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XJL 2 1 280 UNP O14893 GEMI2_HUMAN 1 280 DBREF 5XJL A 1 119 UNP P62314 SMD1_HUMAN 1 119 DBREF 5XJL B 1 118 UNP P62316 SMD2_HUMAN 1 118 DBREF 5XJL E 1 92 UNP P62304 RUXE_HUMAN 1 92 DBREF 5XJL F 1 86 UNP P62306 RUXF_HUMAN 1 86 DBREF 5XJL G 1 76 UNP P62308 RUXG_HUMAN 1 76 DBREF 5XJL M 26 62 UNP Q16637 SMN_HUMAN 26 62 SEQRES 1 2 280 MET ARG ARG ALA GLU LEU ALA GLY LEU LYS THR MET ALA SEQRES 2 2 280 TRP VAL PRO ALA GLU SER ALA VAL GLU GLU LEU MET PRO SEQRES 3 2 280 ARG LEU LEU PRO VAL GLU PRO CYS ASP LEU THR GLU GLY SEQRES 4 2 280 PHE ASP PRO SER VAL PRO PRO ARG THR PRO GLN GLU TYR SEQRES 5 2 280 LEU ARG ARG VAL GLN ILE GLU ALA ALA GLN CYS PRO ASP SEQRES 6 2 280 VAL VAL VAL ALA GLN ILE ASP PRO LYS LYS LEU LYS ARG SEQRES 7 2 280 LYS GLN SER VAL ASN ILE SER LEU SER GLY CYS GLN PRO SEQRES 8 2 280 ALA PRO GLU GLY TYR SER PRO THR LEU GLN TRP GLN GLN SEQRES 9 2 280 GLN GLN VAL ALA GLN PHE SER THR VAL ARG GLN ASN VAL SEQRES 10 2 280 ASN LYS HIS ARG SER HIS TRP LYS SER GLN GLN LEU ASP SEQRES 11 2 280 SER ASN VAL THR MET PRO LYS SER GLU ASP GLU GLU GLY SEQRES 12 2 280 TRP LYS LYS PHE CYS LEU GLY GLU LYS LEU CYS ALA ASP SEQRES 13 2 280 GLY ALA VAL GLY PRO ALA THR ASN GLU SER PRO GLY ILE SEQRES 14 2 280 ASP TYR VAL GLN ILE GLY PHE PRO PRO LEU LEU SER ILE SEQRES 15 2 280 VAL SER ARG MET ASN GLN ALA THR VAL THR SER VAL LEU SEQRES 16 2 280 GLU TYR LEU SER ASN TRP PHE GLY GLU ARG ASP PHE THR SEQRES 17 2 280 PRO GLU LEU GLY ARG TRP LEU TYR ALA LEU LEU ALA CYS SEQRES 18 2 280 LEU GLU LYS PRO LEU LEU PRO GLU ALA HIS SER LEU ILE SEQRES 19 2 280 ARG GLN LEU ALA ARG ARG CYS SER GLU VAL ARG LEU LEU SEQRES 20 2 280 VAL ASP SER LYS ASP ASP GLU ARG VAL PRO ALA LEU ASN SEQRES 21 2 280 LEU LEU ILE CYS LEU VAL SER ARG TYR PHE ASP GLN ARG SEQRES 22 2 280 ASP LEU ALA ASP GLU PRO SER SEQRES 1 A 119 MET LYS LEU VAL ARG PHE LEU MET LYS LEU SER HIS GLU SEQRES 2 A 119 THR VAL THR ILE GLU LEU LYS ASN GLY THR GLN VAL HIS SEQRES 3 A 119 GLY THR ILE THR GLY VAL ASP VAL SER MET ASN THR HIS SEQRES 4 A 119 LEU LYS ALA VAL LYS MET THR LEU LYS ASN ARG GLU PRO SEQRES 5 A 119 VAL GLN LEU GLU THR LEU SER ILE ARG GLY ASN ASN ILE SEQRES 6 A 119 ARG TYR PHE ILE LEU PRO ASP SER LEU PRO LEU ASP THR SEQRES 7 A 119 LEU LEU VAL ASP VAL GLU PRO LYS VAL LYS SER LYS LYS SEQRES 8 A 119 ARG GLU ALA VAL ALA GLY ARG GLY ARG GLY ARG GLY ARG SEQRES 9 A 119 GLY ARG GLY ARG GLY ARG GLY ARG GLY ARG GLY GLY PRO SEQRES 10 A 119 ARG ARG SEQRES 1 B 118 MET SER LEU LEU ASN LYS PRO LYS SER GLU MET THR PRO SEQRES 2 B 118 GLU GLU LEU GLN LYS ARG GLU GLU GLU GLU PHE ASN THR SEQRES 3 B 118 GLY PRO LEU SER VAL LEU THR GLN SER VAL LYS ASN ASN SEQRES 4 B 118 THR GLN VAL LEU ILE ASN CYS ARG ASN ASN LYS LYS LEU SEQRES 5 B 118 LEU GLY ARG VAL LYS ALA PHE ASP ARG HIS CYS ASN MET SEQRES 6 B 118 VAL LEU GLU ASN VAL LYS GLU MET TRP THR GLU VAL PRO SEQRES 7 B 118 LYS SER GLY LYS GLY LYS LYS LYS SER LYS PRO VAL ASN SEQRES 8 B 118 LYS ASP ARG TYR ILE SER LYS MET PHE LEU ARG GLY ASP SEQRES 9 B 118 SER VAL ILE VAL VAL LEU ARG ASN PRO LEU ILE ALA GLY SEQRES 10 B 118 LYS SEQRES 1 E 92 MET ALA TYR ARG GLY GLN GLY GLN LYS VAL GLN LYS VAL SEQRES 2 E 92 MET VAL GLN PRO ILE ASN LEU ILE PHE ARG TYR LEU GLN SEQRES 3 E 92 ASN ARG SER ARG ILE GLN VAL TRP LEU TYR GLU GLN VAL SEQRES 4 E 92 ASN MET ARG ILE GLU GLY CYS ILE ILE GLY PHE ASP GLU SEQRES 5 E 92 TYR MET ASN LEU VAL LEU ASP ASP ALA GLU GLU ILE HIS SEQRES 6 E 92 SER LYS THR LYS SER ARG LYS GLN LEU GLY ARG ILE MET SEQRES 7 E 92 LEU LYS GLY ASP ASN ILE THR LEU LEU GLN SER VAL SER SEQRES 8 E 92 ASN SEQRES 1 F 86 MET SER LEU PRO LEU ASN PRO LYS PRO PHE LEU ASN GLY SEQRES 2 F 86 LEU THR GLY LYS PRO VAL MET VAL LYS LEU LYS TRP GLY SEQRES 3 F 86 MET GLU TYR LYS GLY TYR LEU VAL SER VAL ASP GLY TYR SEQRES 4 F 86 MET ASN MET GLN LEU ALA ASN THR GLU GLU TYR ILE ASP SEQRES 5 F 86 GLY ALA LEU SER GLY HIS LEU GLY GLU VAL LEU ILE ARG SEQRES 6 F 86 CYS ASN ASN VAL LEU TYR ILE ARG GLY VAL GLU GLU GLU SEQRES 7 F 86 GLU GLU ASP GLY GLU MET ARG GLU SEQRES 1 G 76 MET SER LYS ALA HIS PRO PRO GLU LEU LYS LYS PHE MET SEQRES 2 G 76 ASP LYS LYS LEU SER LEU LYS LEU ASN GLY GLY ARG HIS SEQRES 3 G 76 VAL GLN GLY ILE LEU ARG GLY PHE ASP PRO PHE MET ASN SEQRES 4 G 76 LEU VAL ILE ASP GLU CYS VAL GLU MET ALA THR SER GLY SEQRES 5 G 76 GLN GLN ASN ASN ILE GLY MET VAL VAL ILE ARG GLY ASN SEQRES 6 G 76 SER ILE ILE MET LEU GLU ALA LEU GLU ARG VAL SEQRES 1 M 37 GLY GLN SER ASP ASP SER ASP ILE TRP ASP ASP THR ALA SEQRES 2 M 37 LEU ILE LYS ALA TYR ASP LYS ALA VAL ALA SER PHE LYS SEQRES 3 M 37 HIS ALA LEU LYS ASN GLY ASP ILE CYS GLU THR FORMUL 8 HOH *31(H2 O) HELIX 1 AA1 PRO 2 49 GLN 2 62 1 14 HELIX 2 AA2 THR 2 99 ARG 2 121 1 23 HELIX 3 AA3 ASP 2 140 GLY 2 150 1 11 HELIX 4 AA4 LEU 2 179 SER 2 184 1 6 HELIX 5 AA5 ASN 2 187 ARG 2 205 1 19 HELIX 6 AA6 THR 2 208 LEU 2 222 1 15 HELIX 7 AA7 LEU 2 227 ARG 2 245 1 19 HELIX 8 AA8 GLU 2 254 TYR 2 269 1 16 HELIX 9 AA9 GLN 2 272 ALA 2 276 5 5 HELIX 10 AB1 LEU A 3 MET A 8 1 6 HELIX 11 AB2 ARG A 61 ASN A 63 5 3 HELIX 12 AB3 PRO A 75 LEU A 80 1 6 HELIX 13 AB4 LEU B 29 ASN B 39 1 11 HELIX 14 AB5 GLN E 16 ARG E 28 1 13 HELIX 15 AB6 ASN F 6 THR F 15 1 10 HELIX 16 AB7 GLU G 8 MET G 13 5 6 HELIX 17 AB8 THR M 37 SER M 49 1 13 SHEET 1 AA114 VAL 2 67 VAL 2 68 0 SHEET 2 AA114 GLU F 28 VAL F 36 -1 O VAL F 36 N VAL 2 67 SHEET 3 AA114 MET F 42 ILE F 51 -1 O TYR F 50 N GLU F 28 SHEET 4 AA114 ALA F 54 ILE F 64 -1 O ALA F 54 N ILE F 51 SHEET 5 AA114 VAL B 106 LEU B 110 -1 N VAL B 109 O LEU F 63 SHEET 6 AA114 GLN B 41 CYS B 46 -1 N ASN B 45 O ILE B 107 SHEET 7 AA114 LYS B 51 PHE B 59 -1 O LEU B 52 N ILE B 44 SHEET 8 AA114 MET B 65 GLU B 76 -1 O VAL B 66 N LYS B 57 SHEET 9 AA114 VAL B 90 LEU B 101 -1 O LYS B 92 N TRP B 74 SHEET 10 AA114 ILE A 65 ILE A 69 -1 N PHE A 68 O PHE B 100 SHEET 11 AA114 THR A 14 LEU A 19 -1 N THR A 16 O ILE A 69 SHEET 12 AA114 GLN A 24 VAL A 32 -1 O VAL A 25 N ILE A 17 SHEET 13 AA114 THR A 38 LEU A 47 -1 O HIS A 39 N GLY A 31 SHEET 14 AA114 ARG A 50 ILE A 60 -1 O LEU A 58 N LEU A 40 SHEET 1 AA214 VAL 2 67 VAL 2 68 0 SHEET 2 AA214 GLU F 28 VAL F 36 -1 O VAL F 36 N VAL 2 67 SHEET 3 AA214 PRO F 18 LEU F 23 -1 N VAL F 21 O TYR F 29 SHEET 4 AA214 VAL F 69 GLY F 74 -1 O LEU F 70 N LYS F 22 SHEET 5 AA214 ARG E 71 LEU E 79 -1 N MET E 78 O ILE F 72 SHEET 6 AA214 LEU E 56 HIS E 65 -1 N LEU E 56 O LEU E 79 SHEET 7 AA214 MET E 41 PHE E 50 -1 N CYS E 46 O ASP E 59 SHEET 8 AA214 ARG E 30 LEU E 35 -1 N ILE E 31 O GLY E 45 SHEET 9 AA214 ILE E 84 SER E 89 -1 O GLN E 88 N GLN E 32 SHEET 10 AA214 ASN G 56 ILE G 62 -1 O VAL G 61 N LEU E 87 SHEET 11 AA214 LEU G 40 GLU G 47 -1 N CYS G 45 O ILE G 57 SHEET 12 AA214 ARG G 25 PHE G 34 -1 N ARG G 32 O VAL G 41 SHEET 13 AA214 LYS G 16 LEU G 21 -1 N LEU G 21 O ARG G 25 SHEET 14 AA214 ILE G 67 GLU G 71 -1 O MET G 69 N LYS G 20 SHEET 1 AA3 2 ASN 2 83 ILE 2 84 0 SHEET 2 AA3 2 ILE B 115 ALA B 116 1 O ALA B 116 N ASN 2 83 CISPEP 1 LYS 2 224 PRO 2 225 0 0.70 CRYST1 82.830 84.600 104.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009555 0.00000