PDB Short entry for 5XTS HEADER SUGAR BINDING PROTEIN 20-JUN-17 5XTS TITLE CRYSTAL STRUCTURE OF THE CYSR-CTLD3 FRAGMENT OF HUMAN MR AT TITLE 2 BASIC/NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MANNOSE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-629; COMPND 5 SYNONYM: MMR,C-TYPE LECTIN DOMAIN FAMILY 13 MEMBER D,C-TYPE LECTIN COMPND 6 DOMAIN FAMILY 13 MEMBER D-LIKE,HUMAN MANNOSE RECEPTOR,HMR,MACROPHAGE COMPND 7 MANNOSE RECEPTOR 1-LIKE PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MRC1, CLEC13D, CLEC13DL, MRC1L1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS COLLAGEN BINDING, LECTIN-ACTIVITY, ENDOCYTIC RECEPTOR, IMMUNE KEYWDS 2 RECEPTOR, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HE,Z.HU REVDAT 3 22-NOV-23 5XTS 1 LINK REVDAT 2 17-JAN-18 5XTS 1 JRNL REVDAT 1 27-DEC-17 5XTS 0 JRNL AUTH Z.HU,X.SHI,B.YU,N.LI,Y.HUANG,Y.HE JRNL TITL STRUCTURAL INSIGHTS INTO THE PH-DEPENDENT CONFORMATIONAL JRNL TITL 2 CHANGE AND COLLAGEN RECOGNITION OF THE HUMAN MANNOSE JRNL TITL 3 RECEPTOR JRNL REF STRUCTURE V. 26 60 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29225077 JRNL DOI 10.1016/J.STR.2017.11.006 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8680 - 4.8173 0.98 3755 150 0.1779 0.2002 REMARK 3 2 4.8173 - 3.8247 1.00 3636 146 0.1346 0.1547 REMARK 3 3 3.8247 - 3.3416 1.00 3599 144 0.1623 0.2090 REMARK 3 4 3.3416 - 3.0362 1.00 3589 144 0.1687 0.2039 REMARK 3 5 3.0362 - 2.8186 1.00 3564 143 0.1708 0.2371 REMARK 3 6 2.8186 - 2.6525 1.00 3585 144 0.1622 0.1917 REMARK 3 7 2.6525 - 2.5197 1.00 3526 141 0.1672 0.1961 REMARK 3 8 2.5197 - 2.4100 1.00 3521 141 0.1563 0.1867 REMARK 3 9 2.4100 - 2.3172 1.00 3539 142 0.1587 0.2208 REMARK 3 10 2.3172 - 2.2373 1.00 3568 143 0.1695 0.1943 REMARK 3 11 2.2373 - 2.1673 1.00 3522 142 0.1771 0.2084 REMARK 3 12 2.1673 - 2.1054 1.00 3515 140 0.1901 0.2432 REMARK 3 13 2.1054 - 2.0500 1.00 3528 141 0.1985 0.2562 REMARK 3 14 2.0500 - 1.9999 0.98 3434 138 0.2289 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3814 REMARK 3 ANGLE : 0.752 5178 REMARK 3 CHIRALITY : 0.046 530 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 10.835 2252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6880 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : 0.71300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.214 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DQO, 5AO5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) POLYETHYLENE GLYCOL 20,000, REMARK 280 0.1M IMIDAZOLE (PH 7.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.12800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.73200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.84850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.73200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.12800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.84850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 343 REMARK 465 ASN A 344 REMARK 465 THR A 345 REMARK 465 THR A 346 REMARK 465 LEU A 347 REMARK 465 ASN A 348 REMARK 465 SER A 349 REMARK 465 PHE A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 491 REMARK 465 SER A 492 REMARK 465 GLN A 493 REMARK 465 GLY A 494 REMARK 465 PRO A 495 REMARK 465 GLU A 496 REMARK 465 ILE A 497 REMARK 465 VAL A 498 REMARK 465 GLU A 499 REMARK 465 VAL A 500 REMARK 465 GLU A 501 REMARK 465 LYS A 502 REMARK 465 GLY A 503 REMARK 465 CYS A 504 REMARK 465 ARG A 505 REMARK 465 LYS A 506 REMARK 465 GLY A 507 REMARK 465 TRP A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 PHE A 513 REMARK 465 TYR A 514 REMARK 465 CYS A 515 REMARK 465 TYR A 516 REMARK 465 MET A 517 REMARK 465 ILE A 518 REMARK 465 GLY A 519 REMARK 465 HIS A 520 REMARK 465 THR A 521 REMARK 465 LEU A 522 REMARK 465 SER A 523 REMARK 465 THR A 524 REMARK 465 PHE A 525 REMARK 465 ALA A 526 REMARK 465 GLU A 527 REMARK 465 ALA A 528 REMARK 465 ASN A 529 REMARK 465 GLN A 530 REMARK 465 THR A 531 REMARK 465 CYS A 532 REMARK 465 ASN A 533 REMARK 465 ASN A 534 REMARK 465 GLU A 535 REMARK 465 ASN A 536 REMARK 465 ALA A 537 REMARK 465 TYR A 538 REMARK 465 LEU A 539 REMARK 465 THR A 540 REMARK 465 THR A 541 REMARK 465 ILE A 542 REMARK 465 GLU A 543 REMARK 465 ASP A 544 REMARK 465 ARG A 545 REMARK 465 TYR A 546 REMARK 465 GLU A 547 REMARK 465 GLN A 548 REMARK 465 ALA A 549 REMARK 465 PHE A 550 REMARK 465 LEU A 551 REMARK 465 THR A 552 REMARK 465 SER A 553 REMARK 465 PHE A 554 REMARK 465 VAL A 555 REMARK 465 GLY A 556 REMARK 465 LEU A 557 REMARK 465 ARG A 558 REMARK 465 PRO A 559 REMARK 465 GLU A 560 REMARK 465 LYS A 561 REMARK 465 TYR A 562 REMARK 465 PHE A 563 REMARK 465 TRP A 564 REMARK 465 THR A 565 REMARK 465 GLY A 566 REMARK 465 LEU A 567 REMARK 465 SER A 568 REMARK 465 ASP A 569 REMARK 465 ILE A 570 REMARK 465 GLN A 571 REMARK 465 THR A 572 REMARK 465 LYS A 573 REMARK 465 GLY A 574 REMARK 465 THR A 575 REMARK 465 PHE A 576 REMARK 465 GLN A 577 REMARK 465 TRP A 578 REMARK 465 THR A 579 REMARK 465 ILE A 580 REMARK 465 GLU A 581 REMARK 465 GLU A 582 REMARK 465 GLU A 583 REMARK 465 VAL A 584 REMARK 465 ARG A 585 REMARK 465 PHE A 586 REMARK 465 THR A 587 REMARK 465 HIS A 588 REMARK 465 TRP A 589 REMARK 465 ASN A 590 REMARK 465 SER A 591 REMARK 465 ASP A 592 REMARK 465 MET A 593 REMARK 465 PRO A 594 REMARK 465 GLY A 595 REMARK 465 ARG A 596 REMARK 465 LYS A 597 REMARK 465 PRO A 598 REMARK 465 GLY A 599 REMARK 465 CYS A 600 REMARK 465 VAL A 601 REMARK 465 ALA A 602 REMARK 465 MET A 603 REMARK 465 ARG A 604 REMARK 465 THR A 605 REMARK 465 GLY A 606 REMARK 465 ILE A 607 REMARK 465 ALA A 608 REMARK 465 GLY A 609 REMARK 465 GLY A 610 REMARK 465 LEU A 611 REMARK 465 TRP A 612 REMARK 465 ASP A 613 REMARK 465 VAL A 614 REMARK 465 LEU A 615 REMARK 465 LYS A 616 REMARK 465 CYS A 617 REMARK 465 ASP A 618 REMARK 465 GLU A 619 REMARK 465 LYS A 620 REMARK 465 ALA A 621 REMARK 465 LYS A 622 REMARK 465 PHE A 623 REMARK 465 VAL A 624 REMARK 465 CYS A 625 REMARK 465 LYS A 626 REMARK 465 HIS A 627 REMARK 465 TRP A 628 REMARK 465 ALA A 629 REMARK 465 HIS A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 221 HH TYR A 265 1.51 REMARK 500 HG SER A 236 O HOH A 802 1.59 REMARK 500 O HOH A 1090 O HOH A 1182 2.06 REMARK 500 O HOH A 1166 O HOH A 1300 2.07 REMARK 500 O HOH A 876 O HOH A 1315 2.08 REMARK 500 O HOH A 1121 O HOH A 1275 2.09 REMARK 500 O HOH A 1206 O HOH A 1222 2.09 REMARK 500 O HOH A 1132 O HOH A 1245 2.09 REMARK 500 O HOH A 1220 O HOH A 1251 2.11 REMARK 500 O HOH A 1235 O HOH A 1268 2.13 REMARK 500 O HOH A 1230 O HOH A 1351 2.13 REMARK 500 O HOH A 1308 O HOH A 1352 2.14 REMARK 500 OD1 ASP A 31 O HOH A 801 2.17 REMARK 500 O HOH A 1183 O HOH A 1267 2.17 REMARK 500 O HOH A 823 O HOH A 891 2.18 REMARK 500 O HOH A 1158 O HOH A 1271 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 45 -153.36 -127.08 REMARK 500 ASN A 104 -109.83 57.02 REMARK 500 ASP A 105 -71.82 -118.42 REMARK 500 LEU A 160 -138.91 47.01 REMARK 500 THR A 274 -40.43 -130.79 REMARK 500 ASN A 302 51.15 -145.32 REMARK 500 ALA A 310 40.74 -85.42 REMARK 500 MET A 433 -1.25 80.82 REMARK 500 GLU A 479 51.73 -96.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1354 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1355 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1356 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1357 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 452 OE1 REMARK 620 2 GLU A 452 OE2 49.8 REMARK 620 3 SER A 454 OG 94.2 88.9 REMARK 620 4 GLU A 461 OE1 149.9 151.4 72.4 REMARK 620 5 ASP A 475 O 94.0 121.0 146.0 84.2 REMARK 620 6 ASP A 475 OD1 65.9 113.0 77.8 84.6 75.7 REMARK 620 7 HOH A1033 O 102.0 73.8 138.3 105.8 71.2 143.9 REMARK 620 8 HOH A1084 O 128.5 79.1 77.4 75.9 121.0 152.1 62.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 DBREF 5XTS A 22 629 UNP P22897 MRC1_HUMAN 22 629 SEQADV 5XTS HIS A 630 UNP P22897 EXPRESSION TAG SEQADV 5XTS HIS A 631 UNP P22897 EXPRESSION TAG SEQADV 5XTS HIS A 632 UNP P22897 EXPRESSION TAG SEQADV 5XTS HIS A 633 UNP P22897 EXPRESSION TAG SEQADV 5XTS HIS A 634 UNP P22897 EXPRESSION TAG SEQADV 5XTS HIS A 635 UNP P22897 EXPRESSION TAG SEQRES 1 A 614 THR ARG GLN PHE LEU ILE TYR ASN GLU ASP HIS LYS ARG SEQRES 2 A 614 CYS VAL ASP ALA VAL SER PRO SER ALA VAL GLN THR ALA SEQRES 3 A 614 ALA CYS ASN GLN ASP ALA GLU SER GLN LYS PHE ARG TRP SEQRES 4 A 614 VAL SER GLU SER GLN ILE MET SER VAL ALA PHE LYS LEU SEQRES 5 A 614 CYS LEU GLY VAL PRO SER LYS THR ASP TRP VAL ALA ILE SEQRES 6 A 614 THR LEU TYR ALA CYS ASP SER LYS SER GLU PHE GLN LYS SEQRES 7 A 614 TRP GLU CYS LYS ASN ASP THR LEU LEU GLY ILE LYS GLY SEQRES 8 A 614 GLU ASP LEU PHE PHE ASN TYR GLY ASN ARG GLN GLU LYS SEQRES 9 A 614 ASN ILE MET LEU TYR LYS GLY SER GLY LEU TRP SER ARG SEQRES 10 A 614 TRP LYS ILE TYR GLY THR THR ASP ASN LEU CYS SER ARG SEQRES 11 A 614 GLY TYR GLU ALA MET TYR THR LEU LEU GLY ASN ALA ASN SEQRES 12 A 614 GLY ALA THR CYS ALA PHE PRO PHE LYS PHE GLU ASN LYS SEQRES 13 A 614 TRP TYR ALA ASP CYS THR SER ALA GLY ARG SER ASP GLY SEQRES 14 A 614 TRP LEU TRP CYS GLY THR THR THR ASP TYR ASP THR ASP SEQRES 15 A 614 LYS LEU PHE GLY TYR CYS PRO LEU LYS PHE GLU GLY SER SEQRES 16 A 614 GLU SER LEU TRP ASN LYS ASP PRO LEU THR SER VAL SER SEQRES 17 A 614 TYR GLN ILE ASN SER LYS SER ALA LEU THR TRP HIS GLN SEQRES 18 A 614 ALA ARG LYS SER CYS GLN GLN GLN ASN ALA GLU LEU LEU SEQRES 19 A 614 SER ILE THR GLU ILE HIS GLU GLN THR TYR LEU THR GLY SEQRES 20 A 614 LEU THR SER SER LEU THR SER GLY LEU TRP ILE GLY LEU SEQRES 21 A 614 ASN SER LEU SER PHE ASN SER GLY TRP GLN TRP SER ASP SEQRES 22 A 614 ARG SER PRO PHE ARG TYR LEU ASN TRP LEU PRO GLY SER SEQRES 23 A 614 PRO SER ALA GLU PRO GLY LYS SER CYS VAL SER LEU ASN SEQRES 24 A 614 PRO GLY LYS ASN ALA LYS TRP GLU ASN LEU GLU CYS VAL SEQRES 25 A 614 GLN LYS LEU GLY TYR ILE CYS LYS LYS GLY ASN THR THR SEQRES 26 A 614 LEU ASN SER PHE VAL ILE PRO SER GLU SER ASP VAL PRO SEQRES 27 A 614 THR HIS CYS PRO SER GLN TRP TRP PRO TYR ALA GLY HIS SEQRES 28 A 614 CYS TYR LYS ILE HIS ARG ASP GLU LYS LYS ILE GLN ARG SEQRES 29 A 614 ASP ALA LEU THR THR CYS ARG LYS GLU GLY GLY ASP LEU SEQRES 30 A 614 THR SER ILE HIS THR ILE GLU GLU LEU ASP PHE ILE ILE SEQRES 31 A 614 SER GLN LEU GLY TYR GLU PRO ASN ASP GLU LEU TRP ILE SEQRES 32 A 614 GLY LEU ASN ASP ILE LYS ILE GLN MET TYR PHE GLU TRP SEQRES 33 A 614 SER ASP GLY THR PRO VAL THR PHE THR LYS TRP LEU ARG SEQRES 34 A 614 GLY GLU PRO SER HIS GLU ASN ASN ARG GLN GLU ASP CYS SEQRES 35 A 614 VAL VAL MET LYS GLY LYS ASP GLY TYR TRP ALA ASP ARG SEQRES 36 A 614 GLY CYS GLU TRP PRO LEU GLY TYR ILE CYS LYS MET LYS SEQRES 37 A 614 SER ARG SER GLN GLY PRO GLU ILE VAL GLU VAL GLU LYS SEQRES 38 A 614 GLY CYS ARG LYS GLY TRP LYS LYS HIS HIS PHE TYR CYS SEQRES 39 A 614 TYR MET ILE GLY HIS THR LEU SER THR PHE ALA GLU ALA SEQRES 40 A 614 ASN GLN THR CYS ASN ASN GLU ASN ALA TYR LEU THR THR SEQRES 41 A 614 ILE GLU ASP ARG TYR GLU GLN ALA PHE LEU THR SER PHE SEQRES 42 A 614 VAL GLY LEU ARG PRO GLU LYS TYR PHE TRP THR GLY LEU SEQRES 43 A 614 SER ASP ILE GLN THR LYS GLY THR PHE GLN TRP THR ILE SEQRES 44 A 614 GLU GLU GLU VAL ARG PHE THR HIS TRP ASN SER ASP MET SEQRES 45 A 614 PRO GLY ARG LYS PRO GLY CYS VAL ALA MET ARG THR GLY SEQRES 46 A 614 ILE ALA GLY GLY LEU TRP ASP VAL LEU LYS CYS ASP GLU SEQRES 47 A 614 LYS ALA LYS PHE VAL CYS LYS HIS TRP ALA HIS HIS HIS SEQRES 48 A 614 HIS HIS HIS HET CA A 701 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *557(H2 O) HELIX 1 AA1 ALA A 53 GLN A 56 5 4 HELIX 2 AA2 SER A 95 GLN A 98 5 4 HELIX 3 AA3 GLY A 134 ARG A 138 5 5 HELIX 4 AA4 ASP A 199 LYS A 204 1 6 HELIX 5 AA5 GLY A 215 TRP A 220 5 6 HELIX 6 AA6 THR A 239 GLN A 249 1 11 HELIX 7 AA7 GLU A 259 THR A 270 1 12 HELIX 8 AA8 PRO A 321 ASN A 324 5 4 HELIX 9 AA9 ILE A 383 GLU A 394 1 12 HELIX 10 AB1 THR A 403 GLN A 413 1 11 SHEET 1 AA1 4 ALA A 43 ALA A 47 0 SHEET 2 AA1 4 ARG A 34 SER A 40 -1 N ASP A 37 O GLN A 45 SHEET 3 AA1 4 ILE A 27 ASN A 29 -1 N ASN A 29 O ARG A 34 SHEET 4 AA1 4 LYS A 140 ILE A 141 -1 O LYS A 140 N TYR A 28 SHEET 1 AA2 4 PHE A 58 TRP A 60 0 SHEET 2 AA2 4 ILE A 66 SER A 68 -1 O MET A 67 N ARG A 59 SHEET 3 AA2 4 LEU A 73 GLY A 76 -1 O LEU A 73 N SER A 68 SHEET 4 AA2 4 THR A 87 TYR A 89 -1 O TYR A 89 N CYS A 74 SHEET 1 AA3 3 VAL A 84 ALA A 85 0 SHEET 2 AA3 3 MET A 128 TYR A 130 -1 O LEU A 129 N VAL A 84 SHEET 3 AA3 3 PHE A 116 ASN A 118 -1 N PHE A 116 O TYR A 130 SHEET 1 AA4 2 TRP A 100 LYS A 103 0 SHEET 2 AA4 2 LEU A 107 ILE A 110 -1 O LEU A 107 N LYS A 103 SHEET 1 AA5 2 PHE A 172 PHE A 174 0 SHEET 2 AA5 2 LYS A 177 TYR A 179 -1 O TYR A 179 N PHE A 172 SHEET 1 AA6 2 TRP A 193 GLY A 195 0 SHEET 2 AA6 2 PHE A 206 TYR A 208 -1 O GLY A 207 N CYS A 194 SHEET 1 AA7 5 ASN A 221 LYS A 222 0 SHEET 2 AA7 5 SER A 229 LEU A 238 -1 O TYR A 230 N ASN A 221 SHEET 3 AA7 5 LEU A 336 LYS A 342 -1 O TYR A 338 N ASN A 233 SHEET 4 AA7 5 LEU A 277 ASN A 282 1 N TRP A 278 O GLY A 337 SHEET 5 AA7 5 GLN A 291 TRP A 292 -1 O GLN A 291 N ASN A 282 SHEET 1 AA8 5 GLU A 253 LEU A 254 0 SHEET 2 AA8 5 LEU A 336 LYS A 342 -1 O LYS A 341 N GLU A 253 SHEET 3 AA8 5 LEU A 277 ASN A 282 1 N TRP A 278 O GLY A 337 SHEET 4 AA8 5 CYS A 316 LEU A 319 -1 O LEU A 319 N LEU A 277 SHEET 5 AA8 5 TRP A 327 LEU A 330 -1 O LEU A 330 N CYS A 316 SHEET 1 AA9 5 TRP A 367 TYR A 369 0 SHEET 2 AA9 5 HIS A 372 LYS A 382 -1 O HIS A 372 N TYR A 369 SHEET 3 AA9 5 LEU A 482 LYS A 489 -1 O TYR A 484 N HIS A 377 SHEET 4 AA9 5 GLU A 421 ASN A 427 1 N TRP A 423 O GLY A 483 SHEET 5 AA9 5 GLU A 436 TRP A 437 -1 O GLU A 436 N ASN A 427 SHEET 1 AB1 5 ASP A 397 LEU A 398 0 SHEET 2 AB1 5 LEU A 482 LYS A 489 -1 O LYS A 487 N ASP A 397 SHEET 3 AB1 5 GLU A 421 ASN A 427 1 N TRP A 423 O GLY A 483 SHEET 4 AB1 5 CYS A 463 LYS A 467 -1 O MET A 466 N LEU A 422 SHEET 5 AB1 5 TYR A 472 ARG A 476 -1 O TYR A 472 N LYS A 467 SSBOND 1 CYS A 35 CYS A 49 1555 1555 2.04 SSBOND 2 CYS A 74 CYS A 91 1555 1555 2.07 SSBOND 3 CYS A 102 CYS A 149 1555 1555 2.05 SSBOND 4 CYS A 168 CYS A 194 1555 1555 2.03 SSBOND 5 CYS A 182 CYS A 209 1555 1555 2.02 SSBOND 6 CYS A 247 CYS A 340 1555 1555 2.07 SSBOND 7 CYS A 316 CYS A 332 1555 1555 2.04 SSBOND 8 CYS A 362 CYS A 373 1555 1555 2.05 SSBOND 9 CYS A 391 CYS A 486 1555 1555 2.04 SSBOND 10 CYS A 463 CYS A 478 1555 1555 2.06 LINK OE1 GLU A 452 CA CA A 701 1555 1555 2.60 LINK OE2 GLU A 452 CA CA A 701 1555 1555 2.60 LINK OG SER A 454 CA CA A 701 1555 1555 2.48 LINK OE1 GLU A 461 CA CA A 701 1555 1555 2.33 LINK O ASP A 475 CA CA A 701 1555 1555 2.36 LINK OD1 ASP A 475 CA CA A 701 1555 1555 2.37 LINK CA CA A 701 O HOH A1033 1555 1555 2.49 LINK CA CA A 701 O HOH A1084 1555 1555 2.38 CISPEP 1 PHE A 170 PRO A 171 0 -7.12 CISPEP 2 SER A 307 PRO A 308 0 -4.22 CISPEP 3 GLU A 452 PRO A 453 0 -8.26 SITE 1 AC1 6 GLU A 452 SER A 454 GLU A 461 ASP A 475 SITE 2 AC1 6 HOH A1033 HOH A1084 CRYST1 60.256 101.697 123.464 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008100 0.00000