PDB Short entry for 5XWR HEADER TRANSCRIPTION 30-JUN-17 5XWR TITLE CRYSTAL STRUCTURE OF RBBP4-PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, COMPND 5 CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I P48,NUCLEOSOME- COMPND 6 REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA-BINDING PROTEIN 4, COMPND 7 RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MET-SER-ARG-ARG-LYS-GLN-ALA-LYS-PRO-GLN-HIS-ILE; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 46015; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HISTONE BINDING PROTEIN, SALL4, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.JOBICHEN,B.H.LUI,G.T.DANIEL,J.SIVARAMAN REVDAT 4 22-NOV-23 5XWR 1 REMARK REVDAT 3 08-AUG-18 5XWR 1 JRNL REVDAT 2 18-JUL-18 5XWR 1 JRNL REVDAT 1 11-JUL-18 5XWR 0 JRNL AUTH B.H.LIU,C.JOBICHEN,C.S.B.CHIA,T.H.M.CHAN,J.P.TANG, JRNL AUTH 2 T.X.Y.CHUNG,J.LI,A.POULSEN,A.W.HUNG,X.KOH-STENTA,Y.S.TAN, JRNL AUTH 3 C.S.VERMA,H.K.TAN,C.S.WU,F.LI,J.HILL,J.JOY,H.YANG,L.CHAI, JRNL AUTH 4 J.SIVARAMAN,D.G.TENEN JRNL TITL TARGETING CANCER ADDICTION FOR SALL4 BY SHIFTING ITS JRNL TITL 2 TRANSCRIPTOME WITH A PHARMACOLOGIC PEPTIDE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E7119 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29976840 JRNL DOI 10.1073/PNAS.1801253115 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 23162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4158 - 6.4647 0.90 1663 164 0.2040 0.2491 REMARK 3 2 6.4647 - 5.1401 0.90 1619 151 0.1821 0.2502 REMARK 3 3 5.1401 - 4.4930 0.89 1568 139 0.1651 0.1877 REMARK 3 4 4.4930 - 4.0834 0.88 1563 148 0.1618 0.2187 REMARK 3 5 4.0834 - 3.7913 0.86 1529 143 0.1731 0.2274 REMARK 3 6 3.7913 - 3.5682 0.87 1544 142 0.1777 0.2302 REMARK 3 7 3.5682 - 3.3898 0.87 1512 137 0.1744 0.2675 REMARK 3 8 3.3898 - 3.2424 0.84 1503 148 0.1837 0.2467 REMARK 3 9 3.2424 - 3.1177 0.84 1489 137 0.2017 0.2687 REMARK 3 10 3.1177 - 3.0103 0.83 1445 142 0.2081 0.2842 REMARK 3 11 3.0103 - 2.9162 0.83 1494 131 0.2251 0.3284 REMARK 3 12 2.9162 - 2.8329 0.83 1421 140 0.2424 0.3208 REMARK 3 13 2.8329 - 2.7584 0.83 1463 142 0.2504 0.3364 REMARK 3 14 2.7584 - 2.6912 0.76 1343 127 0.2563 0.3496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6233 REMARK 3 ANGLE : 1.346 8510 REMARK 3 CHIRALITY : 0.057 946 REMARK 3 PLANARITY : 0.007 1101 REMARK 3 DIHEDRAL : 14.582 2191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.1859 5.8777 25.8832 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0857 REMARK 3 T33: 0.0741 T12: 0.0093 REMARK 3 T13: 0.0432 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.2607 L22: 0.4020 REMARK 3 L33: 0.4764 L12: 0.0869 REMARK 3 L13: 0.2496 L23: 0.2231 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0213 S13: 0.0280 REMARK 3 S21: 0.0630 S22: -0.0161 S23: 0.0108 REMARK 3 S31: 0.0601 S32: -0.0181 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.689 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2XU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH5.5, 25% PEG 3,350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 HIS A 97 REMARK 465 TYR A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 PHE A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 PHE A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 PRO A 356 REMARK 465 GLU A 357 REMARK 465 ASP A 358 REMARK 465 ALA A 359 REMARK 465 ASP A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 LEU B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 PHE B 8 REMARK 465 ASP B 9 REMARK 465 ASP B 10 REMARK 465 ALA B 91 REMARK 465 GLN B 92 REMARK 465 PHE B 93 REMARK 465 ASP B 94 REMARK 465 ALA B 95 REMARK 465 SER B 96 REMARK 465 HIS B 97 REMARK 465 TYR B 98 REMARK 465 ASP B 99 REMARK 465 SER B 100 REMARK 465 GLU B 101 REMARK 465 LYS B 102 REMARK 465 GLY B 103 REMARK 465 GLU B 104 REMARK 465 PHE B 105 REMARK 465 GLY B 106 REMARK 465 GLY B 107 REMARK 465 PHE B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 VAL B 111 REMARK 465 SER B 112 REMARK 465 PRO B 211 REMARK 465 LYS B 212 REMARK 465 GLU B 213 REMARK 465 PRO B 356 REMARK 465 GLU B 357 REMARK 465 ASP B 358 REMARK 465 ALA B 359 REMARK 465 ASP B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 PRO B 414 REMARK 465 GLU B 415 REMARK 465 GLY B 416 REMARK 465 SER B 417 REMARK 465 VAL B 418 REMARK 465 ASP B 419 REMARK 465 PRO B 420 REMARK 465 GLU B 421 REMARK 465 GLY B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 465 SER B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 16 CG1 CG2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ASP A 60 CG OD1 OD2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 SER A 96 OG REMARK 470 VAL A 111 CG1 CG2 REMARK 470 SER A 112 OG REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LEU A 308 CG CD1 CD2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 PHE B 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 VAL B 210 CG1 CG2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 LYS B 307 CG CD CE NZ REMARK 470 GLU B 353 CG CD OE1 OE2 REMARK 470 LYS C 8 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 275 OG SER A 293 1.47 REMARK 500 O GLU A 13 CD1 ILE A 17 1.78 REMARK 500 O VAL A 35 CB ALA A 95 2.01 REMARK 500 NZ LYS B 114 O HOH B 501 2.09 REMARK 500 OD1 ASN B 397 O HOH B 502 2.13 REMARK 500 O HOH B 559 O HOH D 103 2.14 REMARK 500 OE2 GLU A 386 O HOH A 501 2.14 REMARK 500 N VAL A 35 CB ALA A 95 2.17 REMARK 500 OG SER A 336 O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 11.87 -53.88 REMARK 500 LEU A 34 113.55 -170.22 REMARK 500 ASP A 74 -115.72 -155.77 REMARK 500 GLU A 75 -144.52 47.56 REMARK 500 ASN A 88 -77.63 -99.81 REMARK 500 ASP A 89 65.48 -153.15 REMARK 500 ASP A 90 -127.85 -104.61 REMARK 500 ALA A 91 -66.56 -155.64 REMARK 500 GLN A 92 -140.63 39.44 REMARK 500 ASP A 94 -135.99 49.43 REMARK 500 ARG A 129 144.16 -171.41 REMARK 500 SER A 147 -18.95 79.52 REMARK 500 TYR A 181 -58.99 -132.93 REMARK 500 SER A 184 118.60 -164.26 REMARK 500 ASN A 305 98.18 -166.69 REMARK 500 SER A 315 -36.34 -166.62 REMARK 500 ASP A 339 15.32 -68.20 REMARK 500 TRP A 388 -3.08 72.88 REMARK 500 GLU B 13 -8.90 65.15 REMARK 500 GLU B 14 85.59 -67.63 REMARK 500 ARG B 15 46.10 -98.60 REMARK 500 LEU B 34 111.43 -170.14 REMARK 500 SER B 73 75.46 -118.81 REMARK 500 ASP B 74 73.95 53.68 REMARK 500 GLU B 75 -148.59 -171.38 REMARK 500 GLN B 76 95.29 62.36 REMARK 500 GLU B 124 84.71 -68.12 REMARK 500 SER B 147 -41.77 84.62 REMARK 500 TYR B 181 -59.14 -130.65 REMARK 500 SER B 208 45.84 -76.12 REMARK 500 ALA B 274 -169.85 -171.65 REMARK 500 ASN B 305 94.71 -167.60 REMARK 500 SER B 315 -29.56 -172.39 REMARK 500 GLU B 319 152.06 -48.49 REMARK 500 TRP B 388 -7.00 71.33 REMARK 500 LYS D 8 82.75 55.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 559 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH C 110 DISTANCE = 6.40 ANGSTROMS DBREF 5XWR A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 5XWR B 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 5XWR C 1 12 PDB 5XWR 5XWR 1 12 DBREF 5XWR D 1 12 PDB 5XWR 5XWR 1 12 SEQADV 5XWR HIS A -17 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -16 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -15 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -14 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -13 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -12 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -11 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -10 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -9 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS A -8 UNP Q09028 EXPRESSION TAG SEQADV 5XWR LEU A -7 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLU A -6 UNP Q09028 EXPRESSION TAG SEQADV 5XWR VAL A -5 UNP Q09028 EXPRESSION TAG SEQADV 5XWR LEU A -4 UNP Q09028 EXPRESSION TAG SEQADV 5XWR PHE A -3 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLN A -2 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLY A -1 UNP Q09028 EXPRESSION TAG SEQADV 5XWR PRO A 0 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -17 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -16 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -15 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -14 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -13 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -12 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -11 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -10 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -9 UNP Q09028 EXPRESSION TAG SEQADV 5XWR HIS B -8 UNP Q09028 EXPRESSION TAG SEQADV 5XWR LEU B -7 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLU B -6 UNP Q09028 EXPRESSION TAG SEQADV 5XWR VAL B -5 UNP Q09028 EXPRESSION TAG SEQADV 5XWR LEU B -4 UNP Q09028 EXPRESSION TAG SEQADV 5XWR PHE B -3 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLN B -2 UNP Q09028 EXPRESSION TAG SEQADV 5XWR GLY B -1 UNP Q09028 EXPRESSION TAG SEQADV 5XWR PRO B 0 UNP Q09028 EXPRESSION TAG SEQRES 1 A 443 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS LEU GLU VAL SEQRES 2 A 443 LEU PHE GLN GLY PRO MET ALA ASP LYS GLU ALA ALA PHE SEQRES 3 A 443 ASP ASP ALA VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR SEQRES 4 A 443 LYS ILE TRP LYS LYS ASN THR PRO PHE LEU TYR ASP LEU SEQRES 5 A 443 VAL MET THR HIS ALA LEU GLU TRP PRO SER LEU THR ALA SEQRES 6 A 443 GLN TRP LEU PRO ASP VAL THR ARG PRO GLU GLY LYS ASP SEQRES 7 A 443 PHE SER ILE HIS ARG LEU VAL LEU GLY THR HIS THR SER SEQRES 8 A 443 ASP GLU GLN ASN HIS LEU VAL ILE ALA SER VAL GLN LEU SEQRES 9 A 443 PRO ASN ASP ASP ALA GLN PHE ASP ALA SER HIS TYR ASP SEQRES 10 A 443 SER GLU LYS GLY GLU PHE GLY GLY PHE GLY SER VAL SER SEQRES 11 A 443 GLY LYS ILE GLU ILE GLU ILE LYS ILE ASN HIS GLU GLY SEQRES 12 A 443 GLU VAL ASN ARG ALA ARG TYR MET PRO GLN ASN PRO CYS SEQRES 13 A 443 ILE ILE ALA THR LYS THR PRO SER SER ASP VAL LEU VAL SEQRES 14 A 443 PHE ASP TYR THR LYS HIS PRO SER LYS PRO ASP PRO SER SEQRES 15 A 443 GLY GLU CYS ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN SEQRES 16 A 443 LYS GLU GLY TYR GLY LEU SER TRP ASN PRO ASN LEU SER SEQRES 17 A 443 GLY HIS LEU LEU SER ALA SER ASP ASP HIS THR ILE CYS SEQRES 18 A 443 LEU TRP ASP ILE SER ALA VAL PRO LYS GLU GLY LYS VAL SEQRES 19 A 443 VAL ASP ALA LYS THR ILE PHE THR GLY HIS THR ALA VAL SEQRES 20 A 443 VAL GLU ASP VAL SER TRP HIS LEU LEU HIS GLU SER LEU SEQRES 21 A 443 PHE GLY SER VAL ALA ASP ASP GLN LYS LEU MET ILE TRP SEQRES 22 A 443 ASP THR ARG SER ASN ASN THR SER LYS PRO SER HIS SER SEQRES 23 A 443 VAL ASP ALA HIS THR ALA GLU VAL ASN CYS LEU SER PHE SEQRES 24 A 443 ASN PRO TYR SER GLU PHE ILE LEU ALA THR GLY SER ALA SEQRES 25 A 443 ASP LYS THR VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS SEQRES 26 A 443 LEU LYS LEU HIS SER PHE GLU SER HIS LYS ASP GLU ILE SEQRES 27 A 443 PHE GLN VAL GLN TRP SER PRO HIS ASN GLU THR ILE LEU SEQRES 28 A 443 ALA SER SER GLY THR ASP ARG ARG LEU ASN VAL TRP ASP SEQRES 29 A 443 LEU SER LYS ILE GLY GLU GLU GLN SER PRO GLU ASP ALA SEQRES 30 A 443 GLU ASP GLY PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY SEQRES 31 A 443 HIS THR ALA LYS ILE SER ASP PHE SER TRP ASN PRO ASN SEQRES 32 A 443 GLU PRO TRP VAL ILE CYS SER VAL SER GLU ASP ASN ILE SEQRES 33 A 443 MET GLN VAL TRP GLN MET ALA GLU ASN ILE TYR ASN ASP SEQRES 34 A 443 GLU ASP PRO GLU GLY SER VAL ASP PRO GLU GLY GLN GLY SEQRES 35 A 443 SER SEQRES 1 B 443 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS LEU GLU VAL SEQRES 2 B 443 LEU PHE GLN GLY PRO MET ALA ASP LYS GLU ALA ALA PHE SEQRES 3 B 443 ASP ASP ALA VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR SEQRES 4 B 443 LYS ILE TRP LYS LYS ASN THR PRO PHE LEU TYR ASP LEU SEQRES 5 B 443 VAL MET THR HIS ALA LEU GLU TRP PRO SER LEU THR ALA SEQRES 6 B 443 GLN TRP LEU PRO ASP VAL THR ARG PRO GLU GLY LYS ASP SEQRES 7 B 443 PHE SER ILE HIS ARG LEU VAL LEU GLY THR HIS THR SER SEQRES 8 B 443 ASP GLU GLN ASN HIS LEU VAL ILE ALA SER VAL GLN LEU SEQRES 9 B 443 PRO ASN ASP ASP ALA GLN PHE ASP ALA SER HIS TYR ASP SEQRES 10 B 443 SER GLU LYS GLY GLU PHE GLY GLY PHE GLY SER VAL SER SEQRES 11 B 443 GLY LYS ILE GLU ILE GLU ILE LYS ILE ASN HIS GLU GLY SEQRES 12 B 443 GLU VAL ASN ARG ALA ARG TYR MET PRO GLN ASN PRO CYS SEQRES 13 B 443 ILE ILE ALA THR LYS THR PRO SER SER ASP VAL LEU VAL SEQRES 14 B 443 PHE ASP TYR THR LYS HIS PRO SER LYS PRO ASP PRO SER SEQRES 15 B 443 GLY GLU CYS ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN SEQRES 16 B 443 LYS GLU GLY TYR GLY LEU SER TRP ASN PRO ASN LEU SER SEQRES 17 B 443 GLY HIS LEU LEU SER ALA SER ASP ASP HIS THR ILE CYS SEQRES 18 B 443 LEU TRP ASP ILE SER ALA VAL PRO LYS GLU GLY LYS VAL SEQRES 19 B 443 VAL ASP ALA LYS THR ILE PHE THR GLY HIS THR ALA VAL SEQRES 20 B 443 VAL GLU ASP VAL SER TRP HIS LEU LEU HIS GLU SER LEU SEQRES 21 B 443 PHE GLY SER VAL ALA ASP ASP GLN LYS LEU MET ILE TRP SEQRES 22 B 443 ASP THR ARG SER ASN ASN THR SER LYS PRO SER HIS SER SEQRES 23 B 443 VAL ASP ALA HIS THR ALA GLU VAL ASN CYS LEU SER PHE SEQRES 24 B 443 ASN PRO TYR SER GLU PHE ILE LEU ALA THR GLY SER ALA SEQRES 25 B 443 ASP LYS THR VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS SEQRES 26 B 443 LEU LYS LEU HIS SER PHE GLU SER HIS LYS ASP GLU ILE SEQRES 27 B 443 PHE GLN VAL GLN TRP SER PRO HIS ASN GLU THR ILE LEU SEQRES 28 B 443 ALA SER SER GLY THR ASP ARG ARG LEU ASN VAL TRP ASP SEQRES 29 B 443 LEU SER LYS ILE GLY GLU GLU GLN SER PRO GLU ASP ALA SEQRES 30 B 443 GLU ASP GLY PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY SEQRES 31 B 443 HIS THR ALA LYS ILE SER ASP PHE SER TRP ASN PRO ASN SEQRES 32 B 443 GLU PRO TRP VAL ILE CYS SER VAL SER GLU ASP ASN ILE SEQRES 33 B 443 MET GLN VAL TRP GLN MET ALA GLU ASN ILE TYR ASN ASP SEQRES 34 B 443 GLU ASP PRO GLU GLY SER VAL ASP PRO GLU GLY GLN GLY SEQRES 35 B 443 SER SEQRES 1 C 12 MET SER ARG ARG LYS GLN ALA LYS PRO GLN HIS ILE SEQRES 1 D 12 MET SER ARG ARG LYS GLN ALA LYS PRO GLN HIS ILE FORMUL 5 HOH *131(H2 O) HELIX 1 AA1 ARG A 15 THR A 28 1 14 HELIX 2 AA2 THR A 155 HIS A 157 5 3 HELIX 3 AA3 SER A 348 ILE A 350 5 3 HELIX 4 AA4 GLU A 406 ASN A 410 5 5 HELIX 5 AA5 ARG B 15 THR B 28 1 14 HELIX 6 AA6 THR B 155 HIS B 157 5 3 HELIX 7 AA7 SER B 348 ILE B 350 5 3 HELIX 8 AA8 GLU B 406 ASN B 410 5 5 SHEET 1 AA1 4 TYR A 32 ALA A 39 0 SHEET 2 AA1 4 ILE A 398 MET A 404 -1 O VAL A 401 N MET A 36 SHEET 3 AA1 4 VAL A 389 SER A 394 -1 N SER A 392 O GLN A 400 SHEET 4 AA1 4 ILE A 377 TRP A 382 -1 N SER A 378 O VAL A 393 SHEET 1 AA2 4 ALA A 47 TRP A 49 0 SHEET 2 AA2 4 PHE A 61 GLY A 69 -1 O VAL A 67 N GLN A 48 SHEET 3 AA2 4 ASN A 77 PRO A 87 -1 O LEU A 86 N SER A 62 SHEET 4 AA2 4 ILE A 115 HIS A 123 -1 O GLU A 118 N ILE A 81 SHEET 1 AA3 5 ALA A 130 TYR A 132 0 SHEET 2 AA3 5 ILE A 139 LYS A 143 -1 O ALA A 141 N ARG A 131 SHEET 3 AA3 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 AA3 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 AA3 5 VAL A 216 ASP A 218 1 O VAL A 217 N ARG A 174 SHEET 1 AA4 4 GLY A 180 TRP A 185 0 SHEET 2 AA4 4 HIS A 192 SER A 197 -1 O ALA A 196 N GLY A 182 SHEET 3 AA4 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 AA4 4 THR A 221 PHE A 223 -1 O THR A 221 N LEU A 204 SHEET 1 AA5 4 VAL A 230 TRP A 235 0 SHEET 2 AA5 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 AA5 4 LYS A 251 ASP A 256 -1 O TRP A 255 N PHE A 243 SHEET 4 AA5 4 HIS A 267 ASP A 270 -1 O VAL A 269 N LEU A 252 SHEET 1 AA6 4 VAL A 276 PHE A 281 0 SHEET 2 AA6 4 ILE A 288 SER A 293 -1 O GLY A 292 N ASN A 277 SHEET 3 AA6 4 THR A 297 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 AA6 4 HIS A 311 GLU A 314 -1 O PHE A 313 N VAL A 298 SHEET 1 AA7 4 ILE A 320 TRP A 325 0 SHEET 2 AA7 4 ILE A 332 GLY A 337 -1 O ALA A 334 N GLN A 324 SHEET 3 AA7 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 AA7 4 LEU A 366 HIS A 370 -1 O HIS A 370 N LEU A 342 SHEET 1 AA8 4 TYR B 32 ALA B 39 0 SHEET 2 AA8 4 ILE B 398 MET B 404 -1 O MET B 399 N HIS B 38 SHEET 3 AA8 4 VAL B 389 SER B 394 -1 N ILE B 390 O TRP B 402 SHEET 4 AA8 4 ILE B 377 TRP B 382 -1 N SER B 381 O CYS B 391 SHEET 1 AA9 4 ALA B 47 TRP B 49 0 SHEET 2 AA9 4 PHE B 61 GLY B 69 -1 O VAL B 67 N GLN B 48 SHEET 3 AA9 4 ASN B 77 PRO B 87 -1 O VAL B 84 N HIS B 64 SHEET 4 AA9 4 ILE B 115 HIS B 123 -1 O GLU B 118 N ILE B 81 SHEET 1 AB1 5 ARG B 129 TYR B 132 0 SHEET 2 AB1 5 ILE B 139 LYS B 143 -1 O ALA B 141 N ARG B 131 SHEET 3 AB1 5 VAL B 149 ASP B 153 -1 O PHE B 152 N ILE B 140 SHEET 4 AB1 5 LEU B 171 ARG B 174 -1 O LEU B 173 N VAL B 149 SHEET 5 AB1 5 VAL B 216 ASP B 218 1 O VAL B 217 N ARG B 172 SHEET 1 AB2 4 LEU B 183 TRP B 185 0 SHEET 2 AB2 4 HIS B 192 ALA B 196 -1 O LEU B 194 N SER B 184 SHEET 3 AB2 4 ILE B 202 ASP B 206 -1 O TRP B 205 N LEU B 193 SHEET 4 AB2 4 THR B 221 PHE B 223 -1 O THR B 221 N LEU B 204 SHEET 1 AB3 4 VAL B 230 TRP B 235 0 SHEET 2 AB3 4 LEU B 242 ALA B 247 -1 O VAL B 246 N GLU B 231 SHEET 3 AB3 4 LYS B 251 ASP B 256 -1 O TRP B 255 N PHE B 243 SHEET 4 AB3 4 HIS B 267 ASP B 270 -1 O VAL B 269 N LEU B 252 SHEET 1 AB4 4 VAL B 276 PHE B 281 0 SHEET 2 AB4 4 ILE B 288 SER B 293 -1 O GLY B 292 N ASN B 277 SHEET 3 AB4 4 THR B 297 ASP B 302 -1 O TRP B 301 N LEU B 289 SHEET 4 AB4 4 HIS B 311 GLU B 314 -1 O PHE B 313 N VAL B 298 SHEET 1 AB5 4 ILE B 320 TRP B 325 0 SHEET 2 AB5 4 ILE B 332 GLY B 337 -1 O ALA B 334 N GLN B 324 SHEET 3 AB5 4 LEU B 342 ASP B 346 -1 O TRP B 345 N LEU B 333 SHEET 4 AB5 4 LEU B 366 HIS B 370 -1 O HIS B 370 N LEU B 342 CISPEP 1 ASP B 74 GLU B 75 0 25.45 CRYST1 73.840 59.860 101.529 90.00 93.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013543 0.000000 0.000875 0.00000 SCALE2 0.000000 0.016706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009870 0.00000