PDB Short entry for 5Y0D HEADER DNA BINDING PROTEIN/DNA 16-JUL-17 5Y0D TITLE CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H2B E76K TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 14 CHAIN: C, G; COMPND 15 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HISTONE H2B TYPE 1-J; COMPND 19 CHAIN: D, H; COMPND 20 SYNONYM: HISTONE H2B.1,HISTONE H2B.R,H2B/R; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: DNA (146-MER); COMPND 25 CHAIN: I, J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIST1H3A, H3FA, HIST1H3B, H3FL, HIST1H3C, H3FC, HIST1H3D, SOURCE 6 H3FB, HIST1H3E, H3FD, HIST1H3F, H3FI, HIST1H3G, H3FH, HIST1H3H, SOURCE 7 H3FK, HIST1H3I, H3FF, HIST1H3J, H3FJ; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PH3.1; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 17 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 18 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 19 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 20 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PH4; SOURCE 25 MOL_ID: 3; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: HIST1H2AB, H2AFM, HIST1H2AE, H2AFA; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PH2A; SOURCE 34 MOL_ID: 4; SOURCE 35 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 36 ORGANISM_COMMON: HUMAN; SOURCE 37 ORGANISM_TAXID: 9606; SOURCE 38 GENE: HIST1H2BJ, H2BFR; SOURCE 39 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 40 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 41 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMIDE; SOURCE 42 EXPRESSION_SYSTEM_PLASMID: PH2BE76K; SOURCE 43 MOL_ID: 5; SOURCE 44 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 45 ORGANISM_TAXID: 9606; SOURCE 46 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 47 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 48 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DNA BINDING, NUCLEUS, HISTONE FOLD, CHROMATIN FORMATION, NUCLEOSOME, KEYWDS 2 DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.KURUMIZAKA,Y.ARIMURA,R.FUJITA,M.NODA REVDAT 4 22-NOV-23 5Y0D 1 LINK REVDAT 3 21-NOV-18 5Y0D 1 JRNL REVDAT 2 29-AUG-18 5Y0D 1 JRNL REVDAT 1 18-JUL-18 5Y0D 0 JRNL AUTH Y.ARIMURA,M.IKURA,R.FUJITA,M.NODA,W.KOBAYASHI,N.HORIKOSHI, JRNL AUTH 2 J.SUN,L.SHI,M.KUSAKABE,M.HARATA,Y.OHKAWA,S.TASHIRO,H.KIMURA, JRNL AUTH 3 T.IKURA,H.KURUMIZAKA JRNL TITL CANCER-ASSOCIATED MUTATIONS OF HISTONES H2B, H3.1 AND JRNL TITL 2 H2A.Z.1 AFFECT THE STRUCTURE AND STABILITY OF THE JRNL TITL 3 NUCLEOSOME. JRNL REF NUCLEIC ACIDS RES. V. 46 10007 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30053102 JRNL DOI 10.1093/NAR/GKY661 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 118684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5971 - 6.1795 1.00 4167 212 0.1545 0.1786 REMARK 3 2 6.1795 - 4.9063 1.00 4028 185 0.1689 0.2090 REMARK 3 3 4.9063 - 4.2865 1.00 3953 203 0.1544 0.1955 REMARK 3 4 4.2865 - 3.8948 1.00 3932 218 0.1623 0.2024 REMARK 3 5 3.8948 - 3.6157 1.00 3915 214 0.1814 0.2107 REMARK 3 6 3.6157 - 3.4026 1.00 3887 211 0.1805 0.2279 REMARK 3 7 3.4026 - 3.2322 1.00 3900 203 0.1963 0.2333 REMARK 3 8 3.2322 - 3.0915 1.00 3861 215 0.2101 0.2428 REMARK 3 9 3.0915 - 2.9725 0.99 3809 243 0.2130 0.2545 REMARK 3 10 2.9725 - 2.8700 0.99 3826 235 0.2271 0.2782 REMARK 3 11 2.8700 - 2.7802 0.99 3859 190 0.2349 0.2939 REMARK 3 12 2.7802 - 2.7008 0.99 3805 220 0.2612 0.3301 REMARK 3 13 2.7008 - 2.6297 0.99 3839 199 0.2564 0.3038 REMARK 3 14 2.6297 - 2.5655 0.98 3828 186 0.2335 0.2860 REMARK 3 15 2.5655 - 2.5072 0.98 3797 205 0.2313 0.2711 REMARK 3 16 2.5072 - 2.4538 0.98 3806 183 0.2282 0.2797 REMARK 3 17 2.4538 - 2.4048 0.98 3792 185 0.2339 0.2686 REMARK 3 18 2.4048 - 2.3594 0.97 3744 213 0.2368 0.2839 REMARK 3 19 2.3594 - 2.3172 0.95 3655 190 0.2435 0.3227 REMARK 3 20 2.3172 - 2.2780 0.96 3739 183 0.2617 0.2972 REMARK 3 21 2.2780 - 2.2412 0.95 3666 185 0.2900 0.3308 REMARK 3 22 2.2412 - 2.2067 0.95 3641 202 0.2838 0.3201 REMARK 3 23 2.2067 - 2.1743 0.94 3649 197 0.2923 0.3555 REMARK 3 24 2.1743 - 2.1437 0.95 3618 176 0.3002 0.3417 REMARK 3 25 2.1437 - 2.1147 0.94 3618 172 0.3082 0.3308 REMARK 3 26 2.1147 - 2.0872 0.93 3644 179 0.3188 0.3868 REMARK 3 27 2.0872 - 2.0611 0.93 3527 196 0.3421 0.3797 REMARK 3 28 2.0611 - 2.0363 0.92 3557 184 0.3506 0.4094 REMARK 3 29 2.0363 - 2.0126 0.92 3514 178 0.3593 0.3686 REMARK 3 30 2.0126 - 1.9900 0.83 3162 184 0.3692 0.4120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 12769 REMARK 3 ANGLE : 1.290 18491 REMARK 3 CHIRALITY : 0.056 2101 REMARK 3 PLANARITY : 0.008 1326 REMARK 3 DIHEDRAL : 27.421 5273 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 5 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 950 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 728 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN G REMARK 3 ATOM PAIRS NUMBER : 954 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 816 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 5 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN I REMARK 3 SELECTION : CHAIN J REMARK 3 ATOM PAIRS NUMBER : 2912 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2CV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM CACODYLATE, POTASSIUM REMARK 280 CHLORIDE, MANGANESE CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.49600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.85950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.85950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.49600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.65800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 58510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -489.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 ARG A 134 REMARK 465 ALA A 135 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 ASP B 24 REMARK 465 GLY B 102 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 ALA C 10 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 LYS C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 LYS D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 THR D 19 REMARK 465 LYS D 20 REMARK 465 ALA D 21 REMARK 465 GLN D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 ASP D 25 REMARK 465 GLY D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 28 REMARK 465 ARG D 29 REMARK 465 LYS D 30 REMARK 465 ARG D 31 REMARK 465 ALA D 124 REMARK 465 LYS D 125 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 ALA E 135 REMARK 465 GLY F -3 REMARK 465 SER F -2 REMARK 465 HIS F -1 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 GLY G -3 REMARK 465 SER G -2 REMARK 465 HIS G -1 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 ALA G 10 REMARK 465 ARG G 11 REMARK 465 ALA G 12 REMARK 465 LYS G 13 REMARK 465 ALA G 14 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 HIS G 123 REMARK 465 HIS G 124 REMARK 465 LYS G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 GLY G 128 REMARK 465 LYS G 129 REMARK 465 GLY H -3 REMARK 465 SER H -2 REMARK 465 HIS H -1 REMARK 465 MET H 0 REMARK 465 PRO H 1 REMARK 465 GLU H 2 REMARK 465 PRO H 3 REMARK 465 ALA H 4 REMARK 465 LYS H 5 REMARK 465 SER H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 PRO H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 SER H 14 REMARK 465 LYS H 15 REMARK 465 LYS H 16 REMARK 465 ALA H 17 REMARK 465 VAL H 18 REMARK 465 THR H 19 REMARK 465 LYS H 20 REMARK 465 ALA H 21 REMARK 465 GLN H 22 REMARK 465 LYS H 23 REMARK 465 LYS H 24 REMARK 465 ASP H 25 REMARK 465 GLY H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 28 REMARK 465 ARG H 29 REMARK 465 LYS H 30 REMARK 465 ARG H 31 REMARK 465 SER H 32 REMARK 465 ALA H 124 REMARK 465 LYS H 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N7 DG J 179 O HOH J 3101 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT I 48 O3' DT I 48 C3' -0.044 REMARK 500 DC I 49 O3' DC I 49 C3' -0.043 REMARK 500 DA I 56 O3' DA I 56 C3' -0.042 REMARK 500 DA I 77 O3' DA I 77 C3' -0.053 REMARK 500 DT I 80 O3' DT I 80 C3' -0.041 REMARK 500 DG I 87 O3' DG I 87 C3' -0.048 REMARK 500 DC I 89 O3' DC I 89 C3' -0.039 REMARK 500 DC I 108 O3' DC I 108 C3' -0.047 REMARK 500 DA I 124 O3' DA I 124 C3' -0.057 REMARK 500 DC I 129 O3' DC I 129 C3' -0.045 REMARK 500 DC J 172 O3' DC J 172 C3' -0.046 REMARK 500 DA J 173 O3' DA J 173 C3' -0.039 REMARK 500 DA J 174 O3' DA J 174 C3' -0.050 REMARK 500 DA J 175 O3' DA J 175 C3' -0.046 REMARK 500 DC J 195 O3' DC J 195 C3' -0.077 REMARK 500 DC J 196 O3' DC J 196 C3' -0.041 REMARK 500 DC J 206 O3' DC J 206 C3' -0.039 REMARK 500 DC J 212 O3' DC J 212 C3' -0.053 REMARK 500 DA J 213 O3' DA J 213 C3' -0.067 REMARK 500 DT J 216 O3' DT J 216 C3' -0.057 REMARK 500 DC J 225 O3' DC J 225 C3' -0.049 REMARK 500 DG J 246 O3' DG J 246 C3' -0.044 REMARK 500 DT J 266 O3' DT J 266 C3' -0.042 REMARK 500 DC J 275 O3' DC J 275 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG G 42 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG G 42 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT I 38 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG I 40 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA I 43 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC I 49 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG I 78 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG I 98 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC I 116 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG I 121 O5' - P - OP1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG I 131 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC I 132 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG I 134 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA J 147 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC J 190 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 191 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 193 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC J 195 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 204 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 209 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC J 212 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA J 213 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 214 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG J 224 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA J 241 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT J 242 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 249 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG J 281 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA J 287 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 72 0.09 -69.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2104 O REMARK 620 2 HOH C2126 O 89.0 REMARK 620 3 VAL D 48 O 105.8 101.2 REMARK 620 4 HOH D 203 O 166.7 92.3 86.9 REMARK 620 5 ASP E 77 OD1 88.4 171.2 71.6 92.2 REMARK 620 6 HOH E 302 O 96.8 83.6 19.7 96.5 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN I 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA I 27 OP2 REMARK 620 2 DT I 118 OP2 105.7 REMARK 620 3 HOH I 354 O 101.0 110.7 REMARK 620 4 HOH I 376 O 83.5 72.3 173.4 REMARK 620 5 HOH I 392 O 167.0 70.8 91.8 83.6 REMARK 620 6 HOH I 393 O 101.1 33.3 79.7 104.4 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN I 205 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG I 121 N7 REMARK 620 2 HOH I 344 O 97.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN I 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH I 315 O REMARK 620 2 HOH I 394 O 85.8 REMARK 620 3 HOH J3162 O 88.2 84.2 REMARK 620 4 HOH J3193 O 95.1 176.5 92.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN J3003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG J 185 N7 REMARK 620 2 DG J 186 O6 80.1 REMARK 620 3 HOH J3123 O 74.9 97.6 REMARK 620 4 HOH J3156 O 99.4 173.0 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN J3002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG J 267 N7 REMARK 620 2 HOH J3113 O 82.3 REMARK 620 3 HOH J3122 O 79.0 89.1 REMARK 620 4 HOH J3166 O 80.9 159.9 77.0 REMARK 620 5 HOH J3191 O 90.5 83.8 168.0 107.3 REMARK 620 6 HOH J3200 O 167.8 103.4 90.2 91.2 100.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN J 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN J 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN J 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN J 3004 DBREF 5Y0D A 0 135 UNP P68431 H31_HUMAN 1 136 DBREF 5Y0D B 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 5Y0D C 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 5Y0D D 0 125 UNP P06899 H2B1J_HUMAN 1 126 DBREF 5Y0D E 0 135 UNP P68431 H31_HUMAN 1 136 DBREF 5Y0D F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 5Y0D G 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 5Y0D H 0 125 UNP P06899 H2B1J_HUMAN 1 126 DBREF 5Y0D I 1 146 PDB 5Y0D 5Y0D 1 146 DBREF 5Y0D J 147 292 PDB 5Y0D 5Y0D 147 292 SEQADV 5Y0D GLY A -3 UNP P68431 EXPRESSION TAG SEQADV 5Y0D SER A -2 UNP P68431 EXPRESSION TAG SEQADV 5Y0D HIS A -1 UNP P68431 EXPRESSION TAG SEQADV 5Y0D GLY B -3 UNP P62805 EXPRESSION TAG SEQADV 5Y0D SER B -2 UNP P62805 EXPRESSION TAG SEQADV 5Y0D HIS B -1 UNP P62805 EXPRESSION TAG SEQADV 5Y0D GLY C -3 UNP P04908 EXPRESSION TAG SEQADV 5Y0D SER C -2 UNP P04908 EXPRESSION TAG SEQADV 5Y0D HIS C -1 UNP P04908 EXPRESSION TAG SEQADV 5Y0D GLY D -3 UNP P06899 EXPRESSION TAG SEQADV 5Y0D SER D -2 UNP P06899 EXPRESSION TAG SEQADV 5Y0D HIS D -1 UNP P06899 EXPRESSION TAG SEQADV 5Y0D LYS D 76 UNP P06899 GLU 77 ENGINEERED MUTATION SEQADV 5Y0D GLY E -3 UNP P68431 EXPRESSION TAG SEQADV 5Y0D SER E -2 UNP P68431 EXPRESSION TAG SEQADV 5Y0D HIS E -1 UNP P68431 EXPRESSION TAG SEQADV 5Y0D GLY F -3 UNP P62805 EXPRESSION TAG SEQADV 5Y0D SER F -2 UNP P62805 EXPRESSION TAG SEQADV 5Y0D HIS F -1 UNP P62805 EXPRESSION TAG SEQADV 5Y0D GLY G -3 UNP P04908 EXPRESSION TAG SEQADV 5Y0D SER G -2 UNP P04908 EXPRESSION TAG SEQADV 5Y0D HIS G -1 UNP P04908 EXPRESSION TAG SEQADV 5Y0D GLY H -3 UNP P06899 EXPRESSION TAG SEQADV 5Y0D SER H -2 UNP P06899 EXPRESSION TAG SEQADV 5Y0D HIS H -1 UNP P06899 EXPRESSION TAG SEQADV 5Y0D LYS H 76 UNP P06899 GLU 77 ENGINEERED MUTATION SEQRES 1 A 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 A 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 A 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 A 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 A 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 A 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 A 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 A 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 A 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 A 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 A 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 B 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 B 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 B 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 B 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 B 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 B 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 B 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 B 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 B 106 GLY GLY SEQRES 1 C 133 GLY SER HIS MET SER GLY ARG GLY LYS GLN GLY GLY LYS SEQRES 2 C 133 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 3 C 133 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 4 C 133 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 5 C 133 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 6 C 133 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 7 C 133 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 C 133 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 9 C 133 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 10 C 133 VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS ALA SEQRES 11 C 133 LYS GLY LYS SEQRES 1 D 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 D 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 D 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 D 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 D 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 D 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 D 129 GLY LYS ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 D 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 D 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 D 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 E 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 E 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 E 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 E 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 E 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 E 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 E 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 E 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 E 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 E 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 F 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 F 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 F 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 F 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 F 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 F 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 F 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 F 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 F 106 GLY GLY SEQRES 1 G 133 GLY SER HIS MET SER GLY ARG GLY LYS GLN GLY GLY LYS SEQRES 2 G 133 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 3 G 133 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 4 G 133 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 5 G 133 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 6 G 133 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 7 G 133 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 G 133 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 9 G 133 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 10 G 133 VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS ALA SEQRES 11 G 133 LYS GLY LYS SEQRES 1 H 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 H 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 H 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 H 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 H 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 H 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 H 129 GLY LYS ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 H 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 H 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 H 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 146 DA DT DC DA DA DT DA DT DC DC DA DC DC SEQRES 2 I 146 DT DG DC DA DG DA DT DT DC DT DA DC DC SEQRES 3 I 146 DA DA DA DA DG DT DG DT DA DT DT DT DG SEQRES 4 I 146 DG DA DA DA DC DT DG DC DT DC DC DA DT SEQRES 5 I 146 DC DA DA DA DA DG DG DC DA DT DG DT DT SEQRES 6 I 146 DC DA DG DC DT DG DA DA DT DT DC DA DG SEQRES 7 I 146 DC DT DG DA DA DC DA DT DG DC DC DT DT SEQRES 8 I 146 DT DT DG DA DT DG DG DA DG DC DA DG DT SEQRES 9 I 146 DT DT DC DC DA DA DA DT DA DC DA DC DT SEQRES 10 I 146 DT DT DT DG DG DT DA DG DA DA DT DC DT SEQRES 11 I 146 DG DC DA DG DG DT DG DG DA DT DA DT DT SEQRES 12 I 146 DG DA DT SEQRES 1 J 146 DA DT DC DA DA DT DA DT DC DC DA DC DC SEQRES 2 J 146 DT DG DC DA DG DA DT DT DC DT DA DC DC SEQRES 3 J 146 DA DA DA DA DG DT DG DT DA DT DT DT DG SEQRES 4 J 146 DG DA DA DA DC DT DG DC DT DC DC DA DT SEQRES 5 J 146 DC DA DA DA DA DG DG DC DA DT DG DT DT SEQRES 6 J 146 DC DA DG DC DT DG DA DA DT DT DC DA DG SEQRES 7 J 146 DC DT DG DA DA DC DA DT DG DC DC DT DT SEQRES 8 J 146 DT DT DG DA DT DG DG DA DG DC DA DG DT SEQRES 9 J 146 DT DT DC DC DA DA DA DT DA DC DA DC DT SEQRES 10 J 146 DT DT DT DG DG DT DA DG DA DA DT DC DT SEQRES 11 J 146 DG DC DA DG DG DT DG DG DA DT DA DT DT SEQRES 12 J 146 DG DA DT HET CL A 201 1 HET CL C2001 1 HET CL E 201 1 HET MN E 202 1 HET CL G 201 1 HET MN I 201 1 HET MN I 202 1 HET MN I 203 1 HET MN I 204 1 HET MN I 205 1 HET MN J3001 1 HET MN J3002 1 HET MN J3003 1 HET MN J3004 1 HETNAM CL CHLORIDE ION HETNAM MN MANGANESE (II) ION FORMUL 11 CL 4(CL 1-) FORMUL 14 MN 10(MN 2+) FORMUL 25 HOH *509(H2 O) HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 ASP A 77 1 15 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASN B 25 ILE B 29 5 5 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 THR C 16 GLY C 22 1 7 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 ALA C 45 ASP C 72 1 28 HELIX 12 AB3 ILE C 79 ASN C 89 1 11 HELIX 13 AB4 ASP C 90 LEU C 97 1 8 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 37 HIS D 49 1 13 HELIX 16 AB7 SER D 55 ASN D 84 1 30 HELIX 17 AB8 THR D 90 LEU D 102 1 13 HELIX 18 AB9 PRO D 103 SER D 123 1 21 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 ASP E 77 1 15 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 ARG F 92 1 11 HELIX 27 AC9 THR G 16 ALA G 21 1 6 HELIX 28 AD1 PRO G 26 GLY G 37 1 12 HELIX 29 AD2 ALA G 45 ASP G 72 1 28 HELIX 30 AD3 ILE G 79 ASN G 89 1 11 HELIX 31 AD4 ASP G 90 LEU G 97 1 8 HELIX 32 AD5 GLN G 112 LEU G 116 5 5 HELIX 33 AD6 TYR H 37 HIS H 49 1 13 HELIX 34 AD7 SER H 55 ASN H 84 1 30 HELIX 35 AD8 THR H 90 LEU H 102 1 13 HELIX 36 AD9 PRO H 103 SER H 123 1 21 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 100 ILE G 102 1 O THR G 101 N THR B 96 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA6 2 VAL C 100 ILE C 102 0 SHEET 2 AA6 2 THR F 96 TYR F 98 1 O THR F 96 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 78 LINK O HOH C2104 MN MN E 202 3545 1555 2.26 LINK O HOH C2126 MN MN E 202 3545 1555 2.00 LINK O VAL D 48 MN MN E 202 1555 3555 2.26 LINK O HOH D 203 MN MN E 202 3545 1555 2.12 LINK OD1 ASP E 77 MN MN E 202 1555 1555 2.07 LINK MN MN E 202 O HOH E 302 1555 1555 2.16 LINK OP2 DA I 27 MN MN I 201 1555 1555 2.22 LINK O6 DG I 68 MN MN I 203 1555 1555 2.35 LINK OP2 DT I 118 MN MN I 201 1555 4445 2.28 LINK N7 DG I 121 MN MN I 205 1555 1555 2.30 LINK N7 DG I 134 MN MN I 202 1555 1555 2.34 LINK MN MN I 201 O HOH I 354 1555 1555 2.23 LINK MN MN I 201 O HOH I 376 1555 1555 2.17 LINK MN MN I 201 O HOH I 392 1555 4545 2.44 LINK MN MN I 201 O HOH I 393 1555 1555 2.19 LINK MN MN I 204 O HOH I 315 1555 1555 2.43 LINK MN MN I 204 O HOH I 394 1555 1555 2.36 LINK MN MN I 204 O HOH J3162 1555 1555 2.29 LINK MN MN I 204 O HOH J3193 1555 1555 2.24 LINK MN MN I 205 O HOH I 344 1555 1555 1.98 LINK N7 DG J 185 MN MN J3003 1555 1555 2.33 LINK O6 DG J 186 MN MN J3003 1555 1555 2.43 LINK N7 DG J 217 MN MN J3004 1555 1555 2.04 LINK N7 DG J 267 MN MN J3002 1555 1555 2.52 LINK N7 DG J 280 MN MN J3001 1555 1555 2.33 LINK MN MN J3002 O HOH J3113 1555 1555 2.10 LINK MN MN J3002 O HOH J3122 1555 1555 2.33 LINK MN MN J3002 O HOH J3166 1555 1555 1.83 LINK MN MN J3002 O HOH J3191 1555 1555 2.33 LINK MN MN J3002 O HOH J3200 1555 1555 2.27 LINK MN MN J3003 O HOH J3123 1555 1555 2.48 LINK MN MN J3003 O HOH J3156 1555 1555 2.23 SITE 1 AC1 2 PRO A 121 LYS A 122 SITE 1 AC2 5 GLY C 44 GLY C 46 ALA C 47 THR D 90 SITE 2 AC2 5 SER D 91 SITE 1 AC3 2 PRO E 121 LYS E 122 SITE 1 AC4 7 GLU C 64 HOH C2104 HOH C2126 VAL D 48 SITE 2 AC4 7 HOH D 203 ASP E 77 HOH E 302 SITE 1 AC5 4 GLY G 46 ALA G 47 THR H 90 SER H 91 SITE 1 AC6 6 DA I 27 DT I 118 HOH I 354 HOH I 376 SITE 2 AC6 6 HOH I 392 HOH I 393 SITE 1 AC7 1 DG I 134 SITE 1 AC8 1 DG I 68 SITE 1 AC9 4 HOH I 315 HOH I 394 HOH J3162 HOH J3193 SITE 1 AD1 2 DG I 121 HOH I 344 SITE 1 AD2 1 DG J 280 SITE 1 AD3 6 DG J 267 HOH J3113 HOH J3122 HOH J3166 SITE 2 AD3 6 HOH J3191 HOH J3200 SITE 1 AD4 5 DG J 185 DG J 186 HOH J3123 HOH J3156 SITE 2 AD4 5 HOH J3181 SITE 1 AD5 1 DG J 217 CRYST1 98.992 107.316 167.719 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010102 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005962 0.00000