PDB Short entry for 5Y6E HEADER HYDROLASE 11-AUG-17 5Y6E TITLE VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH (R)-2-(4-HYDROXYPHENYL)- TITLE 2 2-((S)-3-MERCAPTO-2-METHYLPROPANAMIDO)ACETIC ACID (COMPOUND 12) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-262; COMPND 5 SYNONYM: BLAVIM-2,METALLO BETA LACTAMASE VIM-2,METALLO BETA- COMPND 6 LACTAMASE,METALLO-BETA LACTAMASE PROTEIN,METALLO-BETA-LACTAMASE VIM- COMPND 7 2,VIM-2 CLASS B BETA-LACTAMASE,VIM-2 CLASS B METALLO B-LACTAMASE,VIM- COMPND 8 2 METALLO BETA-LACTAMASE,VIM-2 TYPE METALLO-BETA-LACTAMASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: OPINF VECTOR BASED KEYWDS METALLO-BETA-LACTAMASE VIM-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI REVDAT 3 22-NOV-23 5Y6E 1 LINK REVDAT 2 07-FEB-18 5Y6E 1 JRNL REVDAT 1 24-JAN-18 5Y6E 0 JRNL AUTH S.LIU,L.JING,Z.-J.YU,C.WU,Y.ZHENG,E.ZHANG,Q.CHEN,Y.YU,L.GUO, JRNL AUTH 2 Y.WU,G.-B.LI JRNL TITL ((S)-3-MERCAPTO-2-METHYLPROPANAMIDO)ACETIC ACID DERIVATIVES JRNL TITL 2 AS METALLO-BETA-LACTAMASE INHIBITORS: SYNTHESIS, KINETIC AND JRNL TITL 3 CRYSTALLOGRAPHIC STUDIES. JRNL REF EUR J MED CHEM V. 145 649 2018 JRNL REFN ISSN 1768-3254 JRNL PMID 29353720 JRNL DOI 10.1016/J.EJMECH.2018.01.032 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 64049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7575 - 4.7161 0.99 3549 157 0.1583 0.1485 REMARK 3 2 4.7161 - 3.7437 0.98 3501 153 0.1206 0.1292 REMARK 3 3 3.7437 - 3.2706 0.98 3513 149 0.1301 0.1505 REMARK 3 4 3.2706 - 2.9716 0.99 3616 150 0.1332 0.1857 REMARK 3 5 2.9716 - 2.7586 0.99 3567 136 0.1398 0.1947 REMARK 3 6 2.7586 - 2.5960 0.99 3531 156 0.1292 0.1630 REMARK 3 7 2.5960 - 2.4660 0.99 3587 139 0.1346 0.2062 REMARK 3 8 2.4660 - 2.3586 0.99 3548 141 0.1264 0.1538 REMARK 3 9 2.3586 - 2.2678 0.99 3579 157 0.1287 0.1766 REMARK 3 10 2.2678 - 2.1896 0.99 3548 140 0.1305 0.2092 REMARK 3 11 2.1896 - 2.1211 0.96 3479 142 0.1332 0.1905 REMARK 3 12 2.1211 - 2.0605 0.90 3248 136 0.1418 0.1755 REMARK 3 13 2.0605 - 2.0062 0.89 3211 133 0.1384 0.1829 REMARK 3 14 2.0062 - 1.9573 0.91 3200 118 0.1481 0.2064 REMARK 3 15 1.9573 - 1.9128 0.92 3337 137 0.1465 0.2161 REMARK 3 16 1.9128 - 1.8721 0.91 3348 129 0.1580 0.2567 REMARK 3 17 1.8721 - 1.8346 0.89 3206 113 0.1473 0.1995 REMARK 3 18 1.8346 - 1.8000 0.83 2960 135 0.1444 0.2043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 3607 REMARK 3 ANGLE : 1.045 4896 REMARK 3 CHIRALITY : 0.057 564 REMARK 3 PLANARITY : 0.006 639 REMARK 3 DIHEDRAL : 14.044 2068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5Y6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64049 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5LCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM FORMATE, 23%-30% (V/V) REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.67750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.22600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.67750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.22600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NE2 GLN A 234 LIES ON A SPECIAL POSITION. REMARK 375 NE2 GLN B 234 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 544 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 542 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ASP A 51 OD1 OD2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ASP B 51 OD1 OD2 REMARK 470 GLU B 224 CD OE1 OE2 REMARK 470 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 529 O HOH B 537 1.74 REMARK 500 O HOH B 562 O HOH B 597 1.84 REMARK 500 O HOH A 592 O HOH A 615 1.92 REMARK 500 O HOH A 595 O HOH A 605 1.98 REMARK 500 O HOH A 405 O HOH A 447 2.00 REMARK 500 O HOH A 610 O HOH A 627 2.08 REMARK 500 O HOH A 542 O HOH A 625 2.09 REMARK 500 O HOH B 597 O HOH B 604 2.17 REMARK 500 OD2 ASP A 63 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLN B 234 NE2 GLN B 234 2456 1.33 REMARK 500 CD GLN A 234 NE2 GLN A 234 2556 1.33 REMARK 500 O LYS A 101 NH2 ARG A 141 4445 1.93 REMARK 500 O HOH A 447 O HOH B 446 1554 1.97 REMARK 500 O LYS B 101 NH2 ARG B 141 4456 2.07 REMARK 500 O HOH A 421 O HOH B 402 1554 2.11 REMARK 500 O HOH B 470 O HOH B 470 2455 2.12 REMARK 500 O HOH A 578 O HOH A 578 2555 2.14 REMARK 500 O HOH A 503 O HOH A 503 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 124 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 144.94 76.95 REMARK 500 TRP A 87 70.34 71.61 REMARK 500 ALA A 178 -104.40 -154.86 REMARK 500 ASP B 84 146.71 75.13 REMARK 500 TRP B 87 70.81 70.11 REMARK 500 ALA B 178 -104.41 -154.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.6 REMARK 620 3 HIS A 179 NE2 99.9 109.8 REMARK 620 4 8PO A 304 S14 130.1 117.3 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 111.0 REMARK 620 3 HIS A 240 NE2 93.4 102.6 REMARK 620 4 8PO A 304 S14 106.8 117.8 122.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS B 251 ND1 102.2 REMARK 620 3 FMT B 305 O2 107.5 5.3 REMARK 620 4 FMT B 306 O1 104.2 2.0 3.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 251 ND1 REMARK 620 2 FMT A 305 O2 103.8 REMARK 620 3 FMT A 306 O1 112.3 90.0 REMARK 620 4 HIS B 153 NE2 84.3 113.7 32.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 97.3 REMARK 620 3 HIS B 179 NE2 100.4 109.3 REMARK 620 4 8PO B 304 S14 132.3 116.5 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 114.2 REMARK 620 3 HIS B 240 NE2 92.6 101.8 REMARK 620 4 8PO B 304 S14 106.1 117.3 122.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8PO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8PO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 306 DBREF 5Y6E A 32 262 UNP Q9K2N0 Q9K2N0_PSEAI 32 262 DBREF 5Y6E B 32 262 UNP Q9K2N0 Q9K2N0_PSEAI 32 262 SEQRES 1 A 231 GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU VAL SEQRES 2 A 231 ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE SEQRES 3 A 231 ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN SEQRES 4 A 231 GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE SEQRES 5 A 231 ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU SEQRES 6 A 231 ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG SEQRES 7 A 231 ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY SEQRES 8 A 231 VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SEQRES 9 A 231 SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY ASN SEQRES 10 A 231 GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER SEQRES 11 A 231 GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR SEQRES 12 A 231 PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR SEQRES 13 A 231 VAL PRO SER ALA SER VAL LEU TYR GLY GLY CYS ALA ILE SEQRES 14 A 231 TYR GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP SEQRES 15 A 231 ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG ILE SEQRES 16 A 231 GLN GLN HIS TYR PRO GLU ALA GLN PHE VAL ILE PRO GLY SEQRES 17 A 231 HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS THR SEQRES 18 A 231 THR ASN VAL VAL LYS ALA HIS THR ASN ARG SEQRES 1 B 231 GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU VAL SEQRES 2 B 231 ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE SEQRES 3 B 231 ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN SEQRES 4 B 231 GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE SEQRES 5 B 231 ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU SEQRES 6 B 231 ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG SEQRES 7 B 231 ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY SEQRES 8 B 231 VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SEQRES 9 B 231 SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY ASN SEQRES 10 B 231 GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER SEQRES 11 B 231 GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR SEQRES 12 B 231 PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR SEQRES 13 B 231 VAL PRO SER ALA SER VAL LEU TYR GLY GLY CYS ALA ILE SEQRES 14 B 231 TYR GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP SEQRES 15 B 231 ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG ILE SEQRES 16 B 231 GLN GLN HIS TYR PRO GLU ALA GLN PHE VAL ILE PRO GLY SEQRES 17 B 231 HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS THR SEQRES 18 B 231 THR ASN VAL VAL LYS ALA HIS THR ASN ARG HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET 8PO A 304 18 HET FMT A 305 3 HET FMT A 306 3 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET 8PO B 304 18 HET FMT B 305 3 HET FMT B 306 3 HETNAM ZN ZINC ION HETNAM 8PO (2R)-2-(4-HYDROXYPHENYL)-2-[[(2S)-2-METHYL-3-SULFANYL- HETNAM 2 8PO PROPANOYL]AMINO]ETHANOIC ACID HETNAM FMT FORMIC ACID HETSYN 8PO (R)-2-(4-HYDROXYPHENYL)-2-((S)-3-MERCAPTO-2- HETSYN 2 8PO METHYLPROPANAMIDO)ACETIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 6 8PO 2(C12 H15 N O4 S) FORMUL 7 FMT 4(C H2 O2) FORMUL 15 HOH *474(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 HELIX 9 AA9 THR B 35 ILE B 39 5 5 HELIX 10 AB1 GLY B 88 ILE B 103 1 16 HELIX 11 AB2 HIS B 116 GLY B 121 1 6 HELIX 12 AB3 GLY B 122 ALA B 129 1 8 HELIX 13 AB4 SER B 136 GLY B 147 1 12 HELIX 14 AB5 CYS B 198 ILE B 200 5 3 HELIX 15 AB6 GLU B 218 TYR B 230 1 13 HELIX 16 AB7 LEU B 246 ASN B 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O TYR A 134 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 SHEET 1 AA3 7 ARG B 45 ALA B 50 0 SHEET 2 AA3 7 VAL B 53 PHE B 62 -1 O ILE B 57 N ARG B 45 SHEET 3 AA3 7 ALA B 65 ASP B 76 -1 O ALA B 65 N PHE B 62 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 107 VAL B 111 1 O ARG B 109 N LEU B 82 SHEET 6 AA3 7 ALA B 132 ALA B 135 1 O TYR B 134 N ALA B 110 SHEET 7 AA3 7 HIS B 153 SER B 154 1 O HIS B 153 N THR B 133 SHEET 1 AA4 5 ASP B 163 PHE B 167 0 SHEET 2 AA4 5 VAL B 170 TYR B 174 -1 O LEU B 172 N VAL B 165 SHEET 3 AA4 5 VAL B 185 VAL B 188 -1 O VAL B 185 N PHE B 173 SHEET 4 AA4 5 VAL B 193 GLY B 197 -1 O TYR B 195 N VAL B 186 SHEET 5 AA4 5 PHE B 235 PRO B 238 1 O PHE B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A 301 1555 1555 2.05 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 2.02 LINK OD2 ASP A 118 ZN ZN A 302 1555 1555 2.02 LINK NE2 HIS A 153 ZN ZN B 303 1555 2455 2.10 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.06 LINK SG CYS A 198 ZN ZN A 302 1555 1555 2.36 LINK NE2 HIS A 240 ZN ZN A 302 1555 1555 2.06 LINK ND1 HIS A 251 ZN ZN A 303 1555 1555 2.08 LINK ZN ZN A 301 S14 8PO A 304 1555 1555 2.28 LINK ZN ZN A 302 S14 8PO A 304 1555 1555 2.26 LINK ZN ZN A 303 O2 FMT A 305 1555 1555 2.01 LINK ZN ZN A 303 O1 FMT A 306 1555 1555 1.73 LINK ZN ZN A 303 NE2 HIS B 153 2556 1555 2.10 LINK NE2 HIS B 114 ZN ZN B 301 1555 1555 2.02 LINK ND1 HIS B 116 ZN ZN B 301 1555 1555 2.03 LINK OD2 ASP B 118 ZN ZN B 302 1555 1555 2.01 LINK NE2 HIS B 179 ZN ZN B 301 1555 1555 2.05 LINK SG CYS B 198 ZN ZN B 302 1555 1555 2.36 LINK NE2 HIS B 240 ZN ZN B 302 1555 1555 2.08 LINK ND1 HIS B 251 ZN ZN B 303 1555 1555 2.08 LINK ZN ZN B 301 S14 8PO B 304 1555 1555 2.26 LINK ZN ZN B 302 S14 8PO B 304 1555 1555 2.26 LINK ZN ZN B 303 O2 FMT B 305 1555 1555 2.05 LINK ZN ZN B 303 O1 FMT B 306 1555 1555 1.86 SITE 1 AC1 4 HIS A 114 HIS A 116 HIS A 179 8PO A 304 SITE 1 AC2 5 ASP A 118 ARG A 119 CYS A 198 HIS A 240 SITE 2 AC2 5 8PO A 304 SITE 1 AC3 4 HIS A 251 FMT A 305 FMT A 306 HIS B 153 SITE 1 AC4 17 ASP A 63 TYR A 67 TRP A 87 HIS A 116 SITE 2 AC4 17 ASP A 118 HIS A 179 ARG A 205 GLY A 209 SITE 3 AC4 17 ASN A 210 HIS A 240 ZN A 301 ZN A 302 SITE 4 AC4 17 HOH A 423 HOH A 474 HOH A 494 HOH A 531 SITE 5 AC4 17 HOH A 585 SITE 1 AC5 7 HIS A 251 ASN A 254 ZN A 303 FMT A 306 SITE 2 AC5 7 ALA B 132 HIS B 153 HOH B 458 SITE 1 AC6 8 HIS A 251 ZN A 303 FMT A 305 HOH A 441 SITE 2 AC6 8 ALA B 132 THR B 133 THR B 152 HIS B 153 SITE 1 AC7 4 HIS B 114 HIS B 116 HIS B 179 8PO B 304 SITE 1 AC8 5 ASP B 118 ARG B 119 CYS B 198 HIS B 240 SITE 2 AC8 5 8PO B 304 SITE 1 AC9 4 HIS A 153 HIS B 251 FMT B 305 FMT B 306 SITE 1 AD1 17 ASP B 63 TYR B 67 TRP B 87 HIS B 116 SITE 2 AD1 17 ASP B 118 HIS B 179 ARG B 205 GLY B 209 SITE 3 AD1 17 ASN B 210 HIS B 240 ZN B 301 ZN B 302 SITE 4 AD1 17 HOH B 436 HOH B 466 HOH B 501 HOH B 525 SITE 5 AD1 17 HOH B 539 SITE 1 AD2 6 ALA A 132 HOH A 462 HIS B 251 ASN B 254 SITE 2 AD2 6 ZN B 303 FMT B 306 SITE 1 AD3 8 ALA A 132 THR A 133 THR A 152 HIS A 153 SITE 2 AD3 8 HIS B 251 ZN B 303 FMT B 305 HOH B 414 CRYST1 101.355 74.452 64.456 90.00 129.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009866 0.000000 0.008122 0.00000 SCALE2 0.000000 0.013431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020095 0.00000