PDB Short entry for 5YBD HEADER DNA BINDING PROTEIN 04-SEP-17 5YBD TITLE X-RAY STRUCTURE OF ETS DOMAIN OF ERGP55 IN COMPLEX WITH E74DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ERG; COMPND 3 CHAIN: A, X; COMPND 4 FRAGMENT: ETS DOMAIN, UNP RESIDUES 317-406; COMPND 5 SYNONYM: TRANSFORMING PROTEIN ERG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'); COMPND 9 CHAIN: B, Y; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'); COMPND 13 CHAIN: C, Z; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERG; SOURCE 6 EXPRESSION_SYSTEM: ENTEROBACTERIA PHAGE L1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 268588; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_CELL: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL EXPRESSION; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET21A(+); SOURCE 13 MOL_ID: 2; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: DROSOPHILA SALTANS; SOURCE 16 ORGANISM_TAXID: 7273; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: DROSOPHILA ADUNCA; SOURCE 20 ORGANISM_TAXID: 46893 KEYWDS ETS TRANSCRIPTION FACTOR, HUMAN ERGP55, ETS-E74DNA COMPLEX, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SAXENA,S.P.GANGWAR REVDAT 2 27-MAR-24 5YBD 1 REMARK REVDAT 1 14-NOV-18 5YBD 0 JRNL AUTH R.SHARMA,S.P.GANGWAR,A.K.SAXENA JRNL TITL COMPARATIVE STRUCTURE ANALYSIS OF THE ETSI DOMAIN OF ERG3 JRNL TITL 2 AND ITS COMPLEX WITH THE E74 PROMOTER DNA SEQUENCE JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 656 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30279318 JRNL DOI 10.1107/S2053230X1801110X REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9823 - 3.9920 1.00 3259 155 0.1980 0.2598 REMARK 3 2 3.9920 - 3.1690 0.99 3113 148 0.1987 0.2914 REMARK 3 3 3.1690 - 2.7685 0.99 3018 168 0.2416 0.3385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2514 REMARK 3 ANGLE : 1.265 3543 REMARK 3 CHIRALITY : 0.052 370 REMARK 3 PLANARITY : 0.005 320 REMARK 3 DIHEDRAL : 22.719 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.3564 30.8682 0.1159 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.2107 REMARK 3 T33: 0.2056 T12: -0.0396 REMARK 3 T13: -0.0322 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.5964 L22: 2.2711 REMARK 3 L33: 1.9920 L12: -0.7315 REMARK 3 L13: 0.0206 L23: -0.8010 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.0497 S13: -0.1115 REMARK 3 S21: -0.0215 S22: -0.0178 S23: 0.0396 REMARK 3 S31: -0.0080 S32: 0.0355 S33: -0.0651 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN X AND SEGID X REMARK 3 ATOM PAIRS NUMBER : 903 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B AND SEGID B REMARK 3 SELECTION : CHAIN Y AND SEGID Y REMARK 3 ATOM PAIRS NUMBER : 174 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND SEGID C REMARK 3 SELECTION : CHAIN Z AND SEGID Z REMARK 3 ATOM PAIRS NUMBER : 194 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI(111)MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.769 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG4000, 200MM MGCL2 AS REMARK 280 PRECIPITANT SOLUTION, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.26200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.26200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 116.93550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.93550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.26200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.93550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.26200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 116.93550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 310 REMARK 465 HIS X 404 REMARK 465 HIS X 405 REMARK 465 HIS X 406 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 340 CE REMARK 480 LYS X 340 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DA B 8 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 17 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 23 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA Y 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC Y 3 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DG Y 5 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA Y 8 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC Z 14 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC Z 14 N3 - C4 - C5 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA Z 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT Z 17 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT Z 17 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC Z 19 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC Z 20 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 324 2.52 -69.60 REMARK 500 GLU X 333 72.92 -152.35 REMARK 500 ASN X 336 16.06 -142.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YBD A 310 399 UNP P11308 ERG_HUMAN 317 406 DBREF 5YBD B 2 10 PDB 5YBD 5YBD 2 10 DBREF 5YBD C 14 23 PDB 5YBD 5YBD 14 23 DBREF 5YBD X 310 399 UNP P11308 ERG_HUMAN 317 406 DBREF 5YBD Y 2 10 PDB 5YBD 5YBD 2 10 DBREF 5YBD Z 14 23 PDB 5YBD 5YBD 14 23 SEQADV 5YBD LEU A 400 UNP P11308 EXPRESSION TAG SEQADV 5YBD GLU A 401 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS A 402 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS A 403 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS A 404 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS A 405 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS A 406 UNP P11308 EXPRESSION TAG SEQADV 5YBD LEU X 400 UNP P11308 EXPRESSION TAG SEQADV 5YBD GLU X 401 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS X 402 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS X 403 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS X 404 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS X 405 UNP P11308 EXPRESSION TAG SEQADV 5YBD HIS X 406 UNP P11308 EXPRESSION TAG SEQRES 1 A 97 GLN ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER SEQRES 2 A 97 ASP SER SER ASN SER SER CYS ILE THR TRP GLU GLY THR SEQRES 3 A 97 ASN GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA SEQRES 4 A 97 ARG ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN SEQRES 5 A 97 TYR ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP SEQRES 6 A 97 LYS ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA SEQRES 7 A 97 TYR LYS PHE ASP PHE HIS GLY ILE ALA GLN ALA LEU LEU SEQRES 8 A 97 GLU HIS HIS HIS HIS HIS SEQRES 1 B 9 DA DC DC DG DG DA DA DG DT SEQRES 1 C 10 DC DA DC DT DT DC DC DG DG DT SEQRES 1 X 97 GLN ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER SEQRES 2 X 97 ASP SER SER ASN SER SER CYS ILE THR TRP GLU GLY THR SEQRES 3 X 97 ASN GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA SEQRES 4 X 97 ARG ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN SEQRES 5 X 97 TYR ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP SEQRES 6 X 97 LYS ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA SEQRES 7 X 97 TYR LYS PHE ASP PHE HIS GLY ILE ALA GLN ALA LEU LEU SEQRES 8 X 97 GLU HIS HIS HIS HIS HIS SEQRES 1 Y 9 DA DC DC DG DG DA DA DG DT SEQRES 1 Z 10 DC DA DC DT DT DC DC DG DG DT HELIX 1 AA1 GLN A 312 ASP A 323 1 12 HELIX 2 AA2 SER A 324 SER A 327 5 4 HELIX 3 AA3 ASP A 343 SER A 356 1 14 HELIX 4 AA4 ASN A 361 LYS A 375 1 15 HELIX 5 AA5 ASP A 391 HIS A 406 1 16 HELIX 6 AA6 GLN X 312 ASP X 323 1 12 HELIX 7 AA7 SER X 324 SER X 327 5 4 HELIX 8 AA8 ASP X 343 SER X 356 1 14 HELIX 9 AA9 ASN X 361 LYS X 375 1 15 HELIX 10 AB1 ASP X 391 GLU X 401 1 11 SHEET 1 AA1 4 THR A 331 TRP A 332 0 SHEET 2 AA1 4 GLU A 338 LYS A 340 -1 O LYS A 340 N THR A 331 SHEET 3 AA1 4 ALA A 387 PHE A 390 -1 O TYR A 388 N PHE A 339 SHEET 4 AA1 4 MET A 378 LYS A 380 -1 N THR A 379 O LYS A 389 SHEET 1 AA2 4 THR X 331 TRP X 332 0 SHEET 2 AA2 4 GLU X 338 LYS X 340 -1 O LYS X 340 N THR X 331 SHEET 3 AA2 4 ALA X 387 PHE X 390 -1 O TYR X 388 N PHE X 339 SHEET 4 AA2 4 MET X 378 LYS X 380 -1 N THR X 379 O LYS X 389 CISPEP 1 THR A 335 ASN A 336 0 -0.98 CISPEP 2 GLU X 333 GLY X 334 0 -5.39 CRYST1 39.279 233.871 80.524 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012419 0.00000