PDB Short entry for 5YF2 HEADER TRANSFERASE 20-SEP-17 5YF2 TITLE CRYSTAL STRUCTURE OF CARNMT1 BOUND TO ANSERINE AND SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN (UNP RESIDUES 53-409); COMPND 5 EC: 2.1.1.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARNMT1, C9ORF41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHISGB1 KEYWDS SAM, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CAO,H.LI REVDAT 2 27-MAR-24 5YF2 1 LINK REVDAT 1 01-AUG-18 5YF2 0 JRNL AUTH R.CAO,X.ZHANG,X.LIU,Y.LI,H.LI JRNL TITL MOLECULAR BASIS FOR HISTIDINE N1 POSITION-SPECIFIC JRNL TITL 2 METHYLATION BY CARNMT1. JRNL REF CELL RES. V. 28 494 2018 JRNL REFN ISSN 1748-7838 JRNL PMID 29463897 JRNL DOI 10.1038/S41422-018-0003-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 38191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2503 - 6.5815 0.95 2977 138 0.2034 0.2356 REMARK 3 2 6.5815 - 5.2264 0.97 2829 162 0.1868 0.2153 REMARK 3 3 5.2264 - 4.5665 0.98 2777 163 0.1316 0.1768 REMARK 3 4 4.5665 - 4.1493 0.98 2815 146 0.1284 0.1769 REMARK 3 5 4.1493 - 3.8521 0.98 2802 136 0.1386 0.1720 REMARK 3 6 3.8521 - 3.6251 0.98 2767 147 0.1553 0.1958 REMARK 3 7 3.6251 - 3.4436 0.99 2784 148 0.1646 0.2288 REMARK 3 8 3.4436 - 3.2937 0.99 2779 143 0.1846 0.2379 REMARK 3 9 3.2937 - 3.1670 0.99 2771 135 0.2086 0.2959 REMARK 3 10 3.1670 - 3.0577 0.99 2778 131 0.2309 0.3040 REMARK 3 11 3.0577 - 2.9621 0.99 2775 132 0.2354 0.2785 REMARK 3 12 2.9621 - 2.8775 0.99 2774 126 0.2443 0.3075 REMARK 3 13 2.8775 - 2.8017 0.98 2727 129 0.2548 0.3152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5942 REMARK 3 ANGLE : 0.967 8042 REMARK 3 CHIRALITY : 0.052 847 REMARK 3 PLANARITY : 0.005 1022 REMARK 3 DIHEDRAL : 16.927 3530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 58 THROUGH 409) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9226 53.8815 -3.1172 REMARK 3 T TENSOR REMARK 3 T11: 0.4157 T22: 0.3213 REMARK 3 T33: 0.3802 T12: -0.0806 REMARK 3 T13: -0.0132 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 2.5325 L22: 0.6571 REMARK 3 L33: 1.1762 L12: 0.4892 REMARK 3 L13: -1.1093 L23: -0.3748 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.1772 S13: 0.4152 REMARK 3 S21: 0.1064 S22: 0.0753 S23: 0.0905 REMARK 3 S31: -0.3566 S32: 0.0871 S33: -0.0202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 57 THROUGH 409) REMARK 3 ORIGIN FOR THE GROUP (A): -51.3871 20.7272 0.2219 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2434 REMARK 3 T33: 0.2969 T12: 0.0186 REMARK 3 T13: 0.0209 T23: 0.1214 REMARK 3 L TENSOR REMARK 3 L11: 1.0522 L22: 0.7028 REMARK 3 L33: 2.5868 L12: 0.4385 REMARK 3 L13: -1.1474 L23: -0.3999 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0395 S13: -0.1063 REMARK 3 S21: -0.0308 S22: 0.0325 S23: 0.0038 REMARK 3 S31: 0.2232 S32: -0.0945 S33: 0.0175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG8000, 0.1 M MES, PH 6.0, 0.2 M REMARK 280 CAAC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.87767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 213.75533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.31650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 267.19417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.43883 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.87767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 213.75533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 267.19417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 160.31650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.43883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 695 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 48 REMARK 465 PRO A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 GLU A 57 REMARK 465 HIS A 132 REMARK 465 MET A 133 REMARK 465 PHE A 134 REMARK 465 GLU A 135 REMARK 465 ASN A 136 REMARK 465 LYS A 137 REMARK 465 GLU A 138 REMARK 465 TYR A 139 REMARK 465 GLY A 140 REMARK 465 GLU A 141 REMARK 465 ASP A 142 REMARK 465 GLY A 143 REMARK 465 ASN A 144 REMARK 465 GLY A 145 REMARK 465 LYS A 146 REMARK 465 GLY B 48 REMARK 465 PRO B 49 REMARK 465 LEU B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 56 REMARK 465 GLU B 141 REMARK 465 ASP B 142 REMARK 465 GLY B 143 REMARK 465 ASN B 144 REMARK 465 GLY B 145 REMARK 465 LYS B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 396 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 169 35.51 -146.15 REMARK 500 SER A 246 -62.47 -135.95 REMARK 500 HIS A 281 37.16 -83.23 REMARK 500 ASN A 350 31.43 -97.78 REMARK 500 ASN A 353 -12.21 82.25 REMARK 500 THR A 387 61.38 38.88 REMARK 500 PRO B 103 0.80 -70.00 REMARK 500 HIS B 132 41.89 -94.60 REMARK 500 TYR B 300 70.84 -107.17 REMARK 500 PRO B 343 -165.40 -101.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 110 OD2 REMARK 620 2 HOH B 668 O 65.3 REMARK 620 3 HOH B 705 O 91.0 70.4 REMARK 620 4 HOH B 706 O 139.6 86.3 51.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8V3 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8V3 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 503 DBREF 5YF2 A 53 409 UNP Q8N4J0 CARME_HUMAN 53 409 DBREF 5YF2 B 53 409 UNP Q8N4J0 CARME_HUMAN 53 409 SEQADV 5YF2 GLY A 48 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 PRO A 49 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 LEU A 50 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 GLY A 51 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 SER A 52 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 GLY B 48 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 PRO B 49 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 LEU B 50 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 GLY B 51 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF2 SER B 52 UNP Q8N4J0 EXPRESSION TAG SEQRES 1 A 362 GLY PRO LEU GLY SER SER THR GLU GLU GLU GLU GLU ARG SEQRES 2 A 362 LEU GLU ARG GLU HIS PHE TRP LYS ILE ILE ASN ALA PHE SEQRES 3 A 362 ARG TYR TYR GLY THR SER MET HIS GLU ARG VAL ASN ARG SEQRES 4 A 362 THR GLU ARG GLN PHE ARG SER LEU PRO ALA ASN GLN GLN SEQRES 5 A 362 LYS LEU LEU PRO GLN PHE LEU LEU HIS LEU ASP LYS ILE SEQRES 6 A 362 ARG LYS CYS ILE ASP HIS ASN GLN GLU ILE LEU LEU THR SEQRES 7 A 362 ILE VAL ASN ASP CYS ILE HIS MET PHE GLU ASN LYS GLU SEQRES 8 A 362 TYR GLY GLU ASP GLY ASN GLY LYS ILE MET PRO ALA SER SEQRES 9 A 362 THR PHE ASP MET ASP LYS LEU LYS SER THR LEU LYS GLN SEQRES 10 A 362 PHE VAL ARG ASP TRP SER GLU THR GLY LYS ALA GLU ARG SEQRES 11 A 362 ASP ALA CYS TYR GLN PRO ILE ILE LYS GLU ILE LEU LYS SEQRES 12 A 362 ASN PHE PRO LYS GLU ARG TRP ASP PRO SER LYS VAL ASN SEQRES 13 A 362 ILE LEU VAL PRO GLY ALA GLY LEU GLY ARG LEU ALA TRP SEQRES 14 A 362 GLU ILE ALA MET LEU GLY TYR ALA CYS GLN GLY ASN GLU SEQRES 15 A 362 TRP SER PHE PHE MET LEU PHE SER SER ASN PHE VAL LEU SEQRES 16 A 362 ASN ARG CYS SER GLU ILE ASN LYS TYR LYS LEU TYR PRO SEQRES 17 A 362 TRP ILE HIS GLN PHE SER ASN ASN ARG ARG SER ALA ASP SEQRES 18 A 362 GLN ILE ARG PRO ILE PHE PHE PRO ASP VAL ASP PRO HIS SEQRES 19 A 362 SER LEU PRO PRO GLY SER ASN PHE SER MET THR ALA GLY SEQRES 20 A 362 ASP PHE GLN GLU ILE TYR SER GLU CYS ASN THR TRP ASP SEQRES 21 A 362 CYS ILE ALA THR CYS PHE PHE ILE ASP THR ALA HIS ASN SEQRES 22 A 362 VAL ILE ASP TYR ILE ASP THR ILE TRP LYS ILE LEU LYS SEQRES 23 A 362 PRO GLY GLY ILE TRP ILE ASN LEU GLY PRO LEU LEU TYR SEQRES 24 A 362 HIS PHE GLU ASN LEU ALA ASN GLU LEU SER ILE GLU LEU SEQRES 25 A 362 SER TYR GLU ASP ILE LYS ASN VAL VAL LEU GLN TYR GLY SEQRES 26 A 362 PHE LYS VAL GLU VAL GLU LYS GLU SER VAL LEU SER THR SEQRES 27 A 362 TYR THR VAL ASN ASP LEU SER MET MET LYS TYR TYR TYR SEQRES 28 A 362 GLU CYS VAL LEU PHE VAL VAL ARG LYS PRO GLN SEQRES 1 B 362 GLY PRO LEU GLY SER SER THR GLU GLU GLU GLU GLU ARG SEQRES 2 B 362 LEU GLU ARG GLU HIS PHE TRP LYS ILE ILE ASN ALA PHE SEQRES 3 B 362 ARG TYR TYR GLY THR SER MET HIS GLU ARG VAL ASN ARG SEQRES 4 B 362 THR GLU ARG GLN PHE ARG SER LEU PRO ALA ASN GLN GLN SEQRES 5 B 362 LYS LEU LEU PRO GLN PHE LEU LEU HIS LEU ASP LYS ILE SEQRES 6 B 362 ARG LYS CYS ILE ASP HIS ASN GLN GLU ILE LEU LEU THR SEQRES 7 B 362 ILE VAL ASN ASP CYS ILE HIS MET PHE GLU ASN LYS GLU SEQRES 8 B 362 TYR GLY GLU ASP GLY ASN GLY LYS ILE MET PRO ALA SER SEQRES 9 B 362 THR PHE ASP MET ASP LYS LEU LYS SER THR LEU LYS GLN SEQRES 10 B 362 PHE VAL ARG ASP TRP SER GLU THR GLY LYS ALA GLU ARG SEQRES 11 B 362 ASP ALA CYS TYR GLN PRO ILE ILE LYS GLU ILE LEU LYS SEQRES 12 B 362 ASN PHE PRO LYS GLU ARG TRP ASP PRO SER LYS VAL ASN SEQRES 13 B 362 ILE LEU VAL PRO GLY ALA GLY LEU GLY ARG LEU ALA TRP SEQRES 14 B 362 GLU ILE ALA MET LEU GLY TYR ALA CYS GLN GLY ASN GLU SEQRES 15 B 362 TRP SER PHE PHE MET LEU PHE SER SER ASN PHE VAL LEU SEQRES 16 B 362 ASN ARG CYS SER GLU ILE ASN LYS TYR LYS LEU TYR PRO SEQRES 17 B 362 TRP ILE HIS GLN PHE SER ASN ASN ARG ARG SER ALA ASP SEQRES 18 B 362 GLN ILE ARG PRO ILE PHE PHE PRO ASP VAL ASP PRO HIS SEQRES 19 B 362 SER LEU PRO PRO GLY SER ASN PHE SER MET THR ALA GLY SEQRES 20 B 362 ASP PHE GLN GLU ILE TYR SER GLU CYS ASN THR TRP ASP SEQRES 21 B 362 CYS ILE ALA THR CYS PHE PHE ILE ASP THR ALA HIS ASN SEQRES 22 B 362 VAL ILE ASP TYR ILE ASP THR ILE TRP LYS ILE LEU LYS SEQRES 23 B 362 PRO GLY GLY ILE TRP ILE ASN LEU GLY PRO LEU LEU TYR SEQRES 24 B 362 HIS PHE GLU ASN LEU ALA ASN GLU LEU SER ILE GLU LEU SEQRES 25 B 362 SER TYR GLU ASP ILE LYS ASN VAL VAL LEU GLN TYR GLY SEQRES 26 B 362 PHE LYS VAL GLU VAL GLU LYS GLU SER VAL LEU SER THR SEQRES 27 B 362 TYR THR VAL ASN ASP LEU SER MET MET LYS TYR TYR TYR SEQRES 28 B 362 GLU CYS VAL LEU PHE VAL VAL ARG LYS PRO GLN HET SAH A 501 26 HET 8V3 A 502 17 HET CA A 503 1 HET P6G A 504 19 HET SAH B 501 26 HET 8V3 B 502 17 HET CA B 503 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 8V3 (2~{S})-2-(3-AZANYLPROPANOYLAMINO)-3-(3-METHYLIMIDAZOL- HETNAM 2 8V3 4-YL)PROPANOIC ACID HETNAM CA CALCIUM ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 8V3 2(C10 H16 N4 O3) FORMUL 5 CA 2(CA 2+) FORMUL 6 P6G C12 H26 O7 FORMUL 10 HOH *189(H2 O) HELIX 1 AA1 GLU A 58 TYR A 75 1 18 HELIX 2 AA2 TYR A 75 LEU A 94 1 20 HELIX 3 AA3 PRO A 95 LEU A 101 1 7 HELIX 4 AA4 GLN A 104 ASP A 129 1 26 HELIX 5 AA5 SER A 151 SER A 170 1 20 HELIX 6 AA6 GLY A 173 TYR A 181 1 9 HELIX 7 AA7 TYR A 181 PHE A 192 1 12 HELIX 8 AA8 ASP A 198 LYS A 201 5 4 HELIX 9 AA9 GLY A 212 LEU A 221 1 10 HELIX 10 AB1 SER A 231 ASN A 243 1 13 HELIX 11 AB2 ARG A 265 ILE A 270 1 6 HELIX 12 AB3 ASP A 279 LEU A 283 5 5 HELIX 13 AB4 ASP A 295 TYR A 300 1 6 HELIX 14 AB5 PHE A 314 ALA A 318 5 5 HELIX 15 AB6 ASN A 320 ILE A 331 1 12 HELIX 16 AB7 SER A 360 GLY A 372 1 13 HELIX 17 AB8 GLU B 58 TYR B 75 1 18 HELIX 18 AB9 TYR B 75 SER B 93 1 19 HELIX 19 AC1 PRO B 95 LYS B 100 1 6 HELIX 20 AC2 GLN B 104 HIS B 132 1 29 HELIX 21 AC3 SER B 151 SER B 170 1 20 HELIX 22 AC4 GLY B 173 PHE B 192 1 20 HELIX 23 AC5 ASP B 198 LYS B 201 5 4 HELIX 24 AC6 GLY B 212 LEU B 221 1 10 HELIX 25 AC7 SER B 231 CYS B 245 1 15 HELIX 26 AC8 ARG B 265 ARG B 271 5 7 HELIX 27 AC9 ASP B 279 LEU B 283 5 5 HELIX 28 AD1 ASP B 295 TYR B 300 1 6 HELIX 29 AD2 PHE B 314 ALA B 318 5 5 HELIX 30 AD3 ASN B 320 ILE B 331 1 12 HELIX 31 AD4 SER B 360 GLY B 372 1 13 SHEET 1 AA112 ASN A 288 ALA A 293 0 SHEET 2 AA112 ALA A 224 GLU A 229 1 N GLY A 227 O SER A 290 SHEET 3 AA112 ASN A 203 PRO A 207 1 N ILE A 204 O ALA A 224 SHEET 4 AA112 TRP A 306 CYS A 312 1 O ALA A 310 N LEU A 205 SHEET 5 AA112 LEU A 332 GLY A 342 1 O ILE A 339 N THR A 311 SHEET 6 AA112 MET A 394 ARG A 406 -1 O VAL A 405 N TRP A 338 SHEET 7 AA112 MET B 394 ARG B 406 -1 O TYR B 397 N LYS A 395 SHEET 8 AA112 LEU B 332 GLY B 342 -1 N ASN B 340 O PHE B 403 SHEET 9 AA112 TRP B 306 CYS B 312 1 N TRP B 306 O LYS B 333 SHEET 10 AA112 ASN B 203 PRO B 207 1 N LEU B 205 O ALA B 310 SHEET 11 AA112 ALA B 224 GLU B 229 1 O GLN B 226 N VAL B 206 SHEET 12 AA112 ASN B 288 ALA B 293 1 O SER B 290 N GLY B 227 SHEET 1 AA2 4 LYS A 374 SER A 384 0 SHEET 2 AA2 4 MET A 394 ARG A 406 -1 O LEU A 402 N LYS A 379 SHEET 3 AA2 4 MET B 394 ARG B 406 -1 O TYR B 397 N LYS A 395 SHEET 4 AA2 4 LYS B 374 SER B 384 -1 N LYS B 379 O LEU B 402 SHEET 1 AA3 2 TYR A 251 LEU A 253 0 SHEET 2 AA3 2 ILE A 273 PHE A 275 -1 O PHE A 275 N TYR A 251 SHEET 1 AA4 2 TYR B 251 LEU B 253 0 SHEET 2 AA4 2 ILE B 273 PHE B 275 -1 O ILE B 273 N LEU B 253 LINK OD2 ASP B 110 CA CA B 503 1555 1555 2.86 LINK CA CA B 503 O HOH B 668 1555 1555 2.99 LINK CA CA B 503 O HOH B 705 1555 10554 2.85 LINK CA CA B 503 O HOH B 706 1555 1555 2.49 CISPEP 1 PHE A 275 PRO A 276 0 -4.50 CISPEP 2 PHE B 275 PRO B 276 0 -3.20 SITE 1 AC1 19 ARG A 167 TYR A 181 GLY A 208 ASN A 228 SITE 2 AC1 19 GLU A 229 TRP A 230 SER A 231 MET A 234 SITE 3 AC1 19 GLY A 294 ASP A 295 PHE A 296 CYS A 312 SITE 4 AC1 19 PHE A 313 PHE A 314 THR A 317 TYR A 324 SITE 5 AC1 19 TYR A 386 8V3 A 502 HOH A 604 SITE 1 AC2 8 PHE A 313 ASP A 316 PRO A 343 LEU A 345 SITE 2 AC2 8 TYR A 386 TYR A 398 SAH A 501 HOH A 609 SITE 1 AC3 1 ASP A 363 SITE 1 AC4 1 GLU A 399 SITE 1 AC5 17 ARG B 167 TYR B 181 GLY B 208 ASN B 228 SITE 2 AC5 17 GLU B 229 TRP B 230 SER B 231 MET B 234 SITE 3 AC5 17 ASP B 295 PHE B 296 CYS B 312 PHE B 313 SITE 4 AC5 17 PHE B 314 THR B 317 TYR B 324 TYR B 386 SITE 5 AC5 17 HOH B 638 SITE 1 AC6 6 PHE B 313 ASP B 316 PRO B 343 TYR B 386 SITE 2 AC6 6 TYR B 396 TYR B 398 SITE 1 AC7 5 GLU B 88 ASP B 110 HOH B 668 HOH B 705 SITE 2 AC7 5 HOH B 706 CRYST1 127.690 127.690 320.633 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007831 0.004521 0.000000 0.00000 SCALE2 0.000000 0.009043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003119 0.00000