PDB Short entry for 5YHU HEADER TRANSCRIPTION 30-SEP-17 5YHU TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN MYELIN-GENE TITLE 2 REGULATORY FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELIN REGULATORY FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: MYELIN GENE REGULATORY FACTOR; COMPND 6 EC: 3.4.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYRF, C11ORF9, KIAA0954, MRF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYELINGENE REGULATORY FACTOR, DNA-BINDING DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.CHEN,Y.ZHU,S.YE,R.ZHANG REVDAT 3 27-MAR-24 5YHU 1 REMARK REVDAT 2 04-JUL-18 5YHU 1 JRNL REVDAT 1 23-MAY-18 5YHU 0 JRNL AUTH B.CHEN,Y.ZHU,S.YE,R.ZHANG JRNL TITL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN MYELIN-GENE JRNL TITL 2 REGULATORY FACTOR REVEALS ITS POTENTIAL PROTEIN-DNA JRNL TITL 3 RECOGNITION MODE. JRNL REF J. STRUCT. BIOL. V. 203 170 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 29729323 JRNL DOI 10.1016/J.JSB.2018.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 54003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1871 - 5.0167 0.98 2707 122 0.1959 0.2212 REMARK 3 2 5.0167 - 3.9839 1.00 2639 147 0.1590 0.1661 REMARK 3 3 3.9839 - 3.4808 0.99 2598 136 0.1853 0.2285 REMARK 3 4 3.4808 - 3.1628 0.98 2556 137 0.1986 0.2187 REMARK 3 5 3.1628 - 2.9363 1.00 2573 157 0.2078 0.2279 REMARK 3 6 2.9363 - 2.7632 1.00 2566 135 0.2277 0.2600 REMARK 3 7 2.7632 - 2.6249 1.00 2582 137 0.2200 0.2269 REMARK 3 8 2.6249 - 2.5107 1.00 2584 141 0.2125 0.2500 REMARK 3 9 2.5107 - 2.4140 1.00 2546 137 0.2290 0.2463 REMARK 3 10 2.4140 - 2.3308 0.98 2510 132 0.2203 0.2557 REMARK 3 11 2.3308 - 2.2579 1.00 2599 122 0.2327 0.2437 REMARK 3 12 2.2579 - 2.1934 1.00 2524 142 0.2355 0.2578 REMARK 3 13 2.1934 - 2.1356 1.00 2595 139 0.2123 0.2698 REMARK 3 14 2.1356 - 2.0835 1.00 2539 141 0.2117 0.2167 REMARK 3 15 2.0835 - 2.0362 1.00 2543 128 0.2107 0.2175 REMARK 3 16 2.0362 - 1.9929 1.00 2570 144 0.2120 0.2499 REMARK 3 17 1.9929 - 1.9530 1.00 2562 141 0.2343 0.2272 REMARK 3 18 1.9530 - 1.9161 1.00 2541 138 0.2978 0.3506 REMARK 3 19 1.9161 - 1.8819 0.99 2477 147 0.3328 0.3706 REMARK 3 20 1.8819 - 1.8500 0.96 2446 123 0.2944 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3099 REMARK 3 ANGLE : 0.948 4202 REMARK 3 CHIRALITY : 0.066 453 REMARK 3 PLANARITY : 0.006 547 REMARK 3 DIHEDRAL : 5.158 1881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 34.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM CALCIUM ACETATE, 100MM TRIS-HCL REMARK 280 PH 7.1, 19% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.56100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.34611 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 99.13767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.56100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.34611 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 99.13767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.56100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.34611 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.13767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.56100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.34611 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 99.13767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.56100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.34611 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.13767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.56100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.34611 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.13767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.69221 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 198.27533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.69221 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 198.27533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.69221 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 198.27533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.69221 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 198.27533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.69221 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 198.27533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.69221 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 198.27533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.56100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 91.03832 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -52.56100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 91.03832 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 748 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 753 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 790 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 843 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 315 REMARK 465 PRO A 316 REMARK 465 MET A 317 REMARK 465 ALA A 318 REMARK 465 ASP A 319 REMARK 465 ILE A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 LEU A 323 REMARK 465 LEU A 324 REMARK 465 GLN A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 ASP A 328 REMARK 465 SER A 329 REMARK 465 LEU A 330 REMARK 465 SER A 331 REMARK 465 GLY A 332 REMARK 465 ASN A 524 REMARK 465 PRO A 525 REMARK 465 GLY A 526 REMARK 465 GLN A 527 REMARK 465 PHE A 528 REMARK 465 GLU A 529 REMARK 465 SER A 530 REMARK 465 ASP A 531 REMARK 465 SER A 532 REMARK 465 ASP A 533 REMARK 465 VAL A 534 REMARK 465 LEU A 535 REMARK 465 TRP A 536 REMARK 465 GLN A 537 REMARK 465 ARG A 538 REMARK 465 ALA A 539 REMARK 465 GLN A 540 REMARK 465 VAL A 541 REMARK 465 PRO A 542 REMARK 465 ASP A 543 REMARK 465 THR A 544 REMARK 465 VAL A 545 REMARK 465 PHE A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 GLY A 549 REMARK 465 ARG A 550 REMARK 465 VAL A 551 REMARK 465 GLY A 552 REMARK 465 ILE A 553 REMARK 465 ASN A 554 REMARK 465 THR A 555 REMARK 465 ASP A 556 REMARK 465 ARG A 557 REMARK 465 PRO A 558 REMARK 465 ASP A 559 REMARK 465 GLU A 560 REMARK 465 ALA A 561 REMARK 465 LEU A 562 REMARK 465 VAL A 563 REMARK 465 VAL A 564 REMARK 465 HIS A 565 REMARK 465 GLY A 566 REMARK 465 ASN A 567 REMARK 465 VAL A 568 REMARK 465 LYS A 569 REMARK 465 GLY B 315 REMARK 465 PRO B 316 REMARK 465 MET B 317 REMARK 465 ALA B 318 REMARK 465 ASP B 319 REMARK 465 ILE B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 LEU B 323 REMARK 465 LEU B 324 REMARK 465 GLN B 325 REMARK 465 ASP B 326 REMARK 465 SER B 327 REMARK 465 ASP B 328 REMARK 465 SER B 329 REMARK 465 LEU B 330 REMARK 465 SER B 331 REMARK 465 GLY B 332 REMARK 465 SER B 441 REMARK 465 GLN B 442 REMARK 465 SER B 443 REMARK 465 ASP B 444 REMARK 465 ARG B 445 REMARK 465 SER B 446 REMARK 465 LYS B 447 REMARK 465 ARG B 448 REMARK 465 SER B 523 REMARK 465 ASN B 524 REMARK 465 PRO B 525 REMARK 465 GLY B 526 REMARK 465 GLN B 527 REMARK 465 PHE B 528 REMARK 465 GLU B 529 REMARK 465 SER B 530 REMARK 465 ASP B 531 REMARK 465 SER B 532 REMARK 465 ASP B 533 REMARK 465 VAL B 534 REMARK 465 LEU B 535 REMARK 465 TRP B 536 REMARK 465 GLN B 537 REMARK 465 ARG B 538 REMARK 465 ALA B 539 REMARK 465 GLN B 540 REMARK 465 VAL B 541 REMARK 465 PRO B 542 REMARK 465 ASP B 543 REMARK 465 THR B 544 REMARK 465 VAL B 545 REMARK 465 PHE B 546 REMARK 465 HIS B 547 REMARK 465 HIS B 548 REMARK 465 GLY B 549 REMARK 465 ARG B 550 REMARK 465 VAL B 551 REMARK 465 GLY B 552 REMARK 465 ILE B 553 REMARK 465 ASN B 554 REMARK 465 THR B 555 REMARK 465 ASP B 556 REMARK 465 ARG B 557 REMARK 465 PRO B 558 REMARK 465 ASP B 559 REMARK 465 GLU B 560 REMARK 465 ALA B 561 REMARK 465 LEU B 562 REMARK 465 VAL B 563 REMARK 465 VAL B 564 REMARK 465 HIS B 565 REMARK 465 GLY B 566 REMARK 465 ASN B 567 REMARK 465 VAL B 568 REMARK 465 LYS B 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 756 O HOH A 784 1.94 REMARK 500 O HOH A 601 O HOH A 745 1.96 REMARK 500 NH1 ARG B 521 O HOH B 601 1.97 REMARK 500 NH1 ARG A 469 O HOH A 601 2.01 REMARK 500 O HOH A 784 O HOH A 841 2.01 REMARK 500 NH2 ARG A 469 O HOH A 602 2.09 REMARK 500 O HOH A 763 O HOH A 764 2.09 REMARK 500 OG1 THR B 476 OD1 ASN B 479 2.09 REMARK 500 O HOH A 659 O HOH A 716 2.11 REMARK 500 OD2 ASP A 444 O HOH A 603 2.13 REMARK 500 O HOH A 608 O HOH A 778 2.13 REMARK 500 O HOH A 608 O HOH A 633 2.16 REMARK 500 NZ LYS A 343 O HOH A 604 2.18 REMARK 500 O ALA A 522 O HOH A 605 2.19 REMARK 500 O HOH A 655 O HOH A 806 2.19 REMARK 500 O HOH A 831 O HOH A 835 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 763 O HOH A 830 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 431 76.19 -156.16 REMARK 500 GLN A 490 126.19 -38.38 REMARK 500 TYR B 334 -26.74 -157.01 REMARK 500 ASP B 418 -68.08 -93.01 REMARK 500 ALA B 431 72.80 -156.96 REMARK 500 LYS B 483 -121.83 63.72 REMARK 500 PRO B 488 -4.60 -56.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YHU A 323 569 UNP Q9Y2G1 MYRF_HUMAN 332 578 DBREF 5YHU B 323 569 UNP Q9Y2G1 MYRF_HUMAN 332 578 SEQADV 5YHU GLY A 315 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU PRO A 316 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU MET A 317 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ALA A 318 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ASP A 319 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ILE A 320 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU GLY A 321 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU SER A 322 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU GLY B 315 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU PRO B 316 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU MET B 317 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ALA B 318 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ASP B 319 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU ILE B 320 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU GLY B 321 UNP Q9Y2G1 EXPRESSION TAG SEQADV 5YHU SER B 322 UNP Q9Y2G1 EXPRESSION TAG SEQRES 1 A 255 GLY PRO MET ALA ASP ILE GLY SER LEU LEU GLN ASP SER SEQRES 2 A 255 ASP SER LEU SER GLY SER TYR LEU ASP PRO ASN TYR GLN SEQRES 3 A 255 SER ILE LYS TRP GLN PRO HIS GLN GLN ASN LYS TRP ALA SEQRES 4 A 255 THR LEU TYR ASP ALA ASN TYR LYS GLU LEU PRO MET LEU SEQRES 5 A 255 THR TYR ARG VAL ASP ALA ASP LYS GLY PHE ASN PHE SER SEQRES 6 A 255 VAL GLY ASP ASP ALA PHE VAL CYS GLN LYS LYS ASN HIS SEQRES 7 A 255 PHE GLN VAL THR VAL TYR ILE GLY MET LEU GLY GLU PRO SEQRES 8 A 255 LYS TYR VAL LYS THR PRO GLU GLY LEU LYS PRO LEU ASP SEQRES 9 A 255 CYS PHE TYR LEU LYS LEU HIS GLY VAL LYS LEU GLU ALA SEQRES 10 A 255 LEU ASN GLN SER ILE ASN ILE GLU GLN SER GLN SER ASP SEQRES 11 A 255 ARG SER LYS ARG PRO PHE ASN PRO VAL THR VAL ASN LEU SEQRES 12 A 255 PRO PRO GLU GLN VAL THR LYS VAL THR VAL GLY ARG LEU SEQRES 13 A 255 HIS PHE SER GLU THR THR ALA ASN ASN MET ARG LYS LYS SEQRES 14 A 255 GLY LYS PRO ASN PRO ASP GLN ARG TYR PHE MET LEU VAL SEQRES 15 A 255 VAL ALA LEU GLN ALA HIS ALA GLN ASN GLN ASN TYR THR SEQRES 16 A 255 LEU ALA ALA GLN ILE SER GLU ARG ILE ILE VAL ARG ALA SEQRES 17 A 255 SER ASN PRO GLY GLN PHE GLU SER ASP SER ASP VAL LEU SEQRES 18 A 255 TRP GLN ARG ALA GLN VAL PRO ASP THR VAL PHE HIS HIS SEQRES 19 A 255 GLY ARG VAL GLY ILE ASN THR ASP ARG PRO ASP GLU ALA SEQRES 20 A 255 LEU VAL VAL HIS GLY ASN VAL LYS SEQRES 1 B 255 GLY PRO MET ALA ASP ILE GLY SER LEU LEU GLN ASP SER SEQRES 2 B 255 ASP SER LEU SER GLY SER TYR LEU ASP PRO ASN TYR GLN SEQRES 3 B 255 SER ILE LYS TRP GLN PRO HIS GLN GLN ASN LYS TRP ALA SEQRES 4 B 255 THR LEU TYR ASP ALA ASN TYR LYS GLU LEU PRO MET LEU SEQRES 5 B 255 THR TYR ARG VAL ASP ALA ASP LYS GLY PHE ASN PHE SER SEQRES 6 B 255 VAL GLY ASP ASP ALA PHE VAL CYS GLN LYS LYS ASN HIS SEQRES 7 B 255 PHE GLN VAL THR VAL TYR ILE GLY MET LEU GLY GLU PRO SEQRES 8 B 255 LYS TYR VAL LYS THR PRO GLU GLY LEU LYS PRO LEU ASP SEQRES 9 B 255 CYS PHE TYR LEU LYS LEU HIS GLY VAL LYS LEU GLU ALA SEQRES 10 B 255 LEU ASN GLN SER ILE ASN ILE GLU GLN SER GLN SER ASP SEQRES 11 B 255 ARG SER LYS ARG PRO PHE ASN PRO VAL THR VAL ASN LEU SEQRES 12 B 255 PRO PRO GLU GLN VAL THR LYS VAL THR VAL GLY ARG LEU SEQRES 13 B 255 HIS PHE SER GLU THR THR ALA ASN ASN MET ARG LYS LYS SEQRES 14 B 255 GLY LYS PRO ASN PRO ASP GLN ARG TYR PHE MET LEU VAL SEQRES 15 B 255 VAL ALA LEU GLN ALA HIS ALA GLN ASN GLN ASN TYR THR SEQRES 16 B 255 LEU ALA ALA GLN ILE SER GLU ARG ILE ILE VAL ARG ALA SEQRES 17 B 255 SER ASN PRO GLY GLN PHE GLU SER ASP SER ASP VAL LEU SEQRES 18 B 255 TRP GLN ARG ALA GLN VAL PRO ASP THR VAL PHE HIS HIS SEQRES 19 B 255 GLY ARG VAL GLY ILE ASN THR ASP ARG PRO ASP GLU ALA SEQRES 20 B 255 LEU VAL VAL HIS GLY ASN VAL LYS FORMUL 3 HOH *280(H2 O) HELIX 1 AA1 GLN A 348 TRP A 352 5 5 HELIX 2 AA2 GLN B 348 TRP B 352 5 5 SHEET 1 AA1 5 TRP A 344 PRO A 346 0 SHEET 2 AA1 5 GLN A 506 SER A 515 -1 O ILE A 514 N GLN A 345 SHEET 3 AA1 5 PHE A 493 ALA A 503 -1 N LEU A 499 O LEU A 510 SHEET 4 AA1 5 CYS A 419 LYS A 428 -1 N HIS A 425 O VAL A 496 SHEET 5 AA1 5 ALA A 431 ILE A 436 -1 O ILE A 436 N GLY A 426 SHEET 1 AA2 5 TRP A 344 PRO A 346 0 SHEET 2 AA2 5 GLN A 506 SER A 515 -1 O ILE A 514 N GLN A 345 SHEET 3 AA2 5 PHE A 493 ALA A 503 -1 N LEU A 499 O LEU A 510 SHEET 4 AA2 5 CYS A 419 LYS A 428 -1 N HIS A 425 O VAL A 496 SHEET 5 AA2 5 VAL A 453 VAL A 455 -1 O VAL A 453 N LEU A 422 SHEET 1 AA3 3 THR A 354 TYR A 356 0 SHEET 2 AA3 3 TYR A 407 THR A 410 -1 O LYS A 409 N THR A 354 SHEET 3 AA3 3 GLY A 413 PRO A 416 -1 O LYS A 415 N VAL A 408 SHEET 1 AA4 5 THR A 367 LYS A 374 0 SHEET 2 AA4 5 PHE A 393 MET A 401 -1 O TYR A 398 N ARG A 369 SHEET 3 AA4 5 GLN A 461 PHE A 472 -1 O VAL A 467 N VAL A 395 SHEET 4 AA4 5 ILE A 438 SER A 441 -1 N GLU A 439 O HIS A 471 SHEET 5 AA4 5 LYS A 447 PRO A 449 -1 O ARG A 448 N GLN A 440 SHEET 1 AA5 3 ASN A 377 SER A 379 0 SHEET 2 AA5 3 ALA A 384 GLN A 388 -1 O ALA A 384 N SER A 379 SHEET 3 AA5 3 ILE A 518 ARG A 521 1 O ILE A 519 N PHE A 385 SHEET 1 AA6 5 TRP B 344 PRO B 346 0 SHEET 2 AA6 5 GLN B 506 SER B 515 -1 O ILE B 514 N GLN B 345 SHEET 3 AA6 5 PHE B 493 ALA B 503 -1 N LEU B 499 O ALA B 511 SHEET 4 AA6 5 CYS B 419 LYS B 428 -1 N TYR B 421 O GLN B 500 SHEET 5 AA6 5 ALA B 431 ILE B 436 -1 O ILE B 436 N GLY B 426 SHEET 1 AA7 5 TRP B 344 PRO B 346 0 SHEET 2 AA7 5 GLN B 506 SER B 515 -1 O ILE B 514 N GLN B 345 SHEET 3 AA7 5 PHE B 493 ALA B 503 -1 N LEU B 499 O ALA B 511 SHEET 4 AA7 5 CYS B 419 LYS B 428 -1 N TYR B 421 O GLN B 500 SHEET 5 AA7 5 VAL B 453 VAL B 455 -1 O VAL B 453 N LEU B 422 SHEET 1 AA8 3 THR B 354 TYR B 356 0 SHEET 2 AA8 3 TYR B 407 THR B 410 -1 O LYS B 409 N THR B 354 SHEET 3 AA8 3 GLY B 413 PRO B 416 -1 O LYS B 415 N VAL B 408 SHEET 1 AA9 4 THR B 367 LYS B 374 0 SHEET 2 AA9 4 PHE B 393 MET B 401 -1 O THR B 396 N ASP B 371 SHEET 3 AA9 4 GLN B 461 PHE B 472 -1 O VAL B 467 N VAL B 395 SHEET 4 AA9 4 ILE B 438 GLU B 439 -1 N GLU B 439 O HIS B 471 SHEET 1 AB1 3 ASN B 377 SER B 379 0 SHEET 2 AB1 3 ALA B 384 GLN B 388 -1 O VAL B 386 N ASN B 377 SHEET 3 AB1 3 ILE B 518 ARG B 521 1 O ILE B 519 N PHE B 385 CRYST1 105.122 105.122 297.413 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009513 0.005492 0.000000 0.00000 SCALE2 0.000000 0.010984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003362 0.00000