PDB Short entry for 5YPY HEADER TRANSFERASE 04-NOV-17 5YPY TITLE CRYSTAL STRUCTURE OF ILVN. VAL-1C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOLACTATE SYNTHASE ISOZYME 1 SMALL SUBUNIT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ACETOHYDROXY-ACID SYNTHASE I SMALL SUBUNIT,ALS-I; COMPND 5 EC: 2.2.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ILVN, B3670, JW3645; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE SUBUNIT, REGULATORY SUBUNIT, ACT PROTEIN, AMINO ACID KEYWDS 2 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.P.SARMA,A.BANSAL,H.SCHINDELIN,B.DEMELER REVDAT 4 01-MAY-19 5YPY 1 JRNL REVDAT 3 10-APR-19 5YPY 1 JRNL REVDAT 2 03-APR-19 5YPY 1 JRNL REVDAT 1 19-SEP-18 5YPY 0 JRNL AUTH A.BANSAL,N.M.KARANTH,B.DEMELER,H.SCHINDELIN,S.P.SARMA JRNL TITL CRYSTALLOGRAPHIC STRUCTURES OF ILVN·VAL/ILE COMPLEXES: JRNL TITL 2 CONFORMATIONAL SELECTIVITY FOR FEEDBACK INHIBITION OF ACETO JRNL TITL 3 HYDROXY ACID SYNTHASES. JRNL REF BIOCHEMISTRY V. 58 1992 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30887800 JRNL DOI 10.1021/ACS.BIOCHEM.9B00050 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.M.KARANTH,S.P.SARMA REMARK 1 TITL THE COIL-TO-HELIX TRANSITION IN ILVN REGULATES THE REMARK 1 TITL 2 ALLOSTERIC CONTROL OF ESCHERICHIA COLI ACETOHYDROXYACID REMARK 1 TITL 3 SYNTHASE I. REMARK 1 REF BIOCHEMISTRY V. 52 70 2013 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 23205845 REMARK 1 DOI 10.1021/BI301415M REMARK 1 REFERENCE 2 REMARK 1 AUTH A.MITRA,S.P.SARMA REMARK 1 TITL ESCHERICHIA COLI ILVN INTERACTS WITH THE FAD BINDING DOMAIN REMARK 1 TITL 2 OF ILVB AND ACTIVATES THE AHAS I ENZYME. REMARK 1 REF BIOCHEMISTRY V. 47 1518 2008 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 18193896 REMARK 1 DOI 10.1021/BI701893B REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.13-2998-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2608 - 4.6211 0.99 2706 142 0.1670 0.1958 REMARK 3 2 4.6211 - 3.6685 1.00 2680 131 0.1491 0.1772 REMARK 3 3 3.6685 - 3.2049 1.00 2659 137 0.1844 0.2217 REMARK 3 4 3.2049 - 2.9120 1.00 2661 145 0.1990 0.2649 REMARK 3 5 2.9120 - 2.7033 1.00 2644 134 0.2064 0.2570 REMARK 3 6 2.7033 - 2.5439 1.00 2635 152 0.1993 0.2808 REMARK 3 7 2.5439 - 2.4165 1.00 2652 137 0.2098 0.2489 REMARK 3 8 2.4165 - 2.3113 1.00 2619 138 0.2146 0.2745 REMARK 3 9 2.3113 - 2.2224 1.00 2632 139 0.2249 0.2697 REMARK 3 10 2.2224 - 2.1457 1.00 2638 150 0.2351 0.2563 REMARK 3 11 2.1457 - 2.0786 1.00 2609 154 0.2811 0.3085 REMARK 3 12 2.0786 - 2.0192 1.00 2629 130 0.3355 0.3859 REMARK 3 13 2.0192 - 1.9660 0.96 2518 147 0.3926 0.4669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3002 REMARK 3 ANGLE : 1.430 4069 REMARK 3 CHIRALITY : 0.093 477 REMARK 3 PLANARITY : 0.009 532 REMARK 3 DIHEDRAL : 24.842 1119 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 8:101) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1847 25.0429 34.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.1965 REMARK 3 T33: 0.2186 T12: -0.0246 REMARK 3 T13: 0.0142 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.3854 L22: 6.8764 REMARK 3 L33: 6.6190 L12: -0.6540 REMARK 3 L13: -0.1075 L23: 0.4650 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: -0.3283 S13: 0.1735 REMARK 3 S21: 0.3994 S22: 0.2027 S23: -0.1691 REMARK 3 S31: -0.6957 S32: 0.2504 S33: -0.0960 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 9:101) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1917 12.6714 24.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.4617 T22: 0.2248 REMARK 3 T33: 0.2108 T12: -0.0120 REMARK 3 T13: 0.0383 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.3222 L22: 4.5311 REMARK 3 L33: 4.3790 L12: -1.2151 REMARK 3 L13: -0.9531 L23: -0.2059 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0404 S13: -0.0552 REMARK 3 S21: -0.5565 S22: -0.0233 S23: -0.2193 REMARK 3 S31: 0.1105 S32: 0.3643 S33: 0.0525 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 8:101) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3550 -5.1295 65.9447 REMARK 3 T TENSOR REMARK 3 T11: 0.6523 T22: 0.2914 REMARK 3 T33: 0.2505 T12: 0.0070 REMARK 3 T13: 0.0630 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 5.8756 L22: 2.5210 REMARK 3 L33: 5.5904 L12: -0.1439 REMARK 3 L13: 0.6493 L23: -0.1720 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.2387 S13: -0.4844 REMARK 3 S21: 0.0881 S22: 0.0280 S23: 0.0657 REMARK 3 S31: 0.7756 S32: 0.2956 S33: -0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 9:101) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2669 8.7468 58.1854 REMARK 3 T TENSOR REMARK 3 T11: 0.5663 T22: 0.2886 REMARK 3 T33: 0.2144 T12: -0.0378 REMARK 3 T13: 0.0523 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 5.6821 L22: 2.2254 REMARK 3 L33: 4.4248 L12: 1.0488 REMARK 3 L13: 1.2569 L23: 0.3522 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.2373 S13: 0.4001 REMARK 3 S21: -0.1270 S22: -0.0356 S23: 0.0908 REMARK 3 S31: -0.4369 S32: 0.1937 S33: 0.0447 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.966 REMARK 200 RESOLUTION RANGE LOW (A) : 62.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2LVW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, PH 6.5, MICROBATCH, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.25950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.25950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 GLN B 4 REMARK 465 ASN B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 HIS B 8 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 MET C 3 REMARK 465 GLN C 4 REMARK 465 ASN C 5 REMARK 465 THR C 6 REMARK 465 THR C 7 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 MET D 3 REMARK 465 GLN D 4 REMARK 465 ASN D 5 REMARK 465 THR D 6 REMARK 465 THR D 7 REMARK 465 HIS D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 GLN B 66 CG CD OE1 NE2 REMARK 470 GLN C 47 CG CD OE1 NE2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 ASN C 83 CG OD1 ND2 REMARK 470 ASP D 9 CG OD1 OD2 REMARK 470 GLN D 66 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP D 72 O HOH D 201 2.10 REMARK 500 O ASN A 83 O HOH A 201 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 144.15 -173.85 REMARK 500 ASN C 83 5.43 53.57 REMARK 500 ASP C 86 102.20 -20.93 REMARK 500 ASP D 86 73.59 -153.65 REMARK 500 PHE D 97 -97.32 -113.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL D 101 DBREF 5YPY A 3 98 UNP P0ADF8 ILVN_ECOLI 1 96 DBREF 5YPY B 3 98 UNP P0ADF8 ILVN_ECOLI 1 96 DBREF 5YPY C 3 98 UNP P0ADF8 ILVN_ECOLI 1 96 DBREF 5YPY D 3 98 UNP P0ADF8 ILVN_ECOLI 1 96 SEQADV 5YPY GLY A 1 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY SER A 2 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY GLY B 1 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY SER B 2 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY GLY C 1 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY SER C 2 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY GLY D 1 UNP P0ADF8 EXPRESSION TAG SEQADV 5YPY SER D 2 UNP P0ADF8 EXPRESSION TAG SEQRES 1 A 98 GLY SER MET GLN ASN THR THR HIS ASP ASN VAL ILE LEU SEQRES 2 A 98 GLU LEU THR VAL ARG ASN HIS PRO GLY VAL MET THR HIS SEQRES 3 A 98 VAL CYS GLY LEU PHE ALA ARG ARG ALA PHE ASN VAL GLU SEQRES 4 A 98 GLY ILE LEU CYS LEU PRO ILE GLN ASP SER ASP LYS SER SEQRES 5 A 98 HIS ILE TRP LEU LEU VAL ASN ASP ASP GLN ARG LEU GLU SEQRES 6 A 98 GLN MET ILE SER GLN ILE ASP LYS LEU GLU ASP VAL VAL SEQRES 7 A 98 LYS VAL GLN ARG ASN GLN SER ASP PRO THR MET PHE ASN SEQRES 8 A 98 LYS ILE ALA VAL PHE PHE GLN SEQRES 1 B 98 GLY SER MET GLN ASN THR THR HIS ASP ASN VAL ILE LEU SEQRES 2 B 98 GLU LEU THR VAL ARG ASN HIS PRO GLY VAL MET THR HIS SEQRES 3 B 98 VAL CYS GLY LEU PHE ALA ARG ARG ALA PHE ASN VAL GLU SEQRES 4 B 98 GLY ILE LEU CYS LEU PRO ILE GLN ASP SER ASP LYS SER SEQRES 5 B 98 HIS ILE TRP LEU LEU VAL ASN ASP ASP GLN ARG LEU GLU SEQRES 6 B 98 GLN MET ILE SER GLN ILE ASP LYS LEU GLU ASP VAL VAL SEQRES 7 B 98 LYS VAL GLN ARG ASN GLN SER ASP PRO THR MET PHE ASN SEQRES 8 B 98 LYS ILE ALA VAL PHE PHE GLN SEQRES 1 C 98 GLY SER MET GLN ASN THR THR HIS ASP ASN VAL ILE LEU SEQRES 2 C 98 GLU LEU THR VAL ARG ASN HIS PRO GLY VAL MET THR HIS SEQRES 3 C 98 VAL CYS GLY LEU PHE ALA ARG ARG ALA PHE ASN VAL GLU SEQRES 4 C 98 GLY ILE LEU CYS LEU PRO ILE GLN ASP SER ASP LYS SER SEQRES 5 C 98 HIS ILE TRP LEU LEU VAL ASN ASP ASP GLN ARG LEU GLU SEQRES 6 C 98 GLN MET ILE SER GLN ILE ASP LYS LEU GLU ASP VAL VAL SEQRES 7 C 98 LYS VAL GLN ARG ASN GLN SER ASP PRO THR MET PHE ASN SEQRES 8 C 98 LYS ILE ALA VAL PHE PHE GLN SEQRES 1 D 98 GLY SER MET GLN ASN THR THR HIS ASP ASN VAL ILE LEU SEQRES 2 D 98 GLU LEU THR VAL ARG ASN HIS PRO GLY VAL MET THR HIS SEQRES 3 D 98 VAL CYS GLY LEU PHE ALA ARG ARG ALA PHE ASN VAL GLU SEQRES 4 D 98 GLY ILE LEU CYS LEU PRO ILE GLN ASP SER ASP LYS SER SEQRES 5 D 98 HIS ILE TRP LEU LEU VAL ASN ASP ASP GLN ARG LEU GLU SEQRES 6 D 98 GLN MET ILE SER GLN ILE ASP LYS LEU GLU ASP VAL VAL SEQRES 7 D 98 LYS VAL GLN ARG ASN GLN SER ASP PRO THR MET PHE ASN SEQRES 8 D 98 LYS ILE ALA VAL PHE PHE GLN HET VAL A 101 8 HET VAL B 101 8 HET VAL C 101 8 HET VAL D 101 8 HETNAM VAL VALINE FORMUL 5 VAL 4(C5 H11 N O2) FORMUL 9 HOH *68(H2 O) HELIX 1 AA1 GLY A 22 ARG A 34 1 13 HELIX 2 AA2 ARG A 63 LYS A 73 1 11 HELIX 3 AA3 THR A 88 GLN A 98 1 11 HELIX 4 AA4 GLY B 22 ARG B 33 1 12 HELIX 5 AA5 ASP B 61 LEU B 74 1 14 HELIX 6 AA6 THR B 88 VAL B 95 1 8 HELIX 7 AA7 GLY C 22 ARG C 33 1 12 HELIX 8 AA8 ARG C 63 LEU C 74 1 12 HELIX 9 AA9 THR C 88 PHE C 96 1 9 HELIX 10 AB1 GLY D 22 ARG D 33 1 12 HELIX 11 AB2 ARG D 63 LEU D 74 1 12 HELIX 12 AB3 THR D 88 PHE D 97 1 10 SHEET 1 AA1 8 VAL A 77 ARG A 82 0 SHEET 2 AA1 8 ASN A 10 ARG A 18 -1 N THR A 16 O VAL A 78 SHEET 3 AA1 8 LYS A 51 ASN A 59 -1 O ILE A 54 N LEU A 15 SHEET 4 AA1 8 GLY A 40 PRO A 45 -1 N LEU A 42 O TRP A 55 SHEET 5 AA1 8 GLY B 40 PRO B 45 -1 O CYS B 43 N ILE A 41 SHEET 6 AA1 8 LYS B 51 ASN B 59 -1 O TRP B 55 N LEU B 42 SHEET 7 AA1 8 ASN B 10 ARG B 18 -1 N LEU B 15 O ILE B 54 SHEET 8 AA1 8 VAL B 77 ARG B 82 -1 O GLN B 81 N GLU B 14 SHEET 1 AA2 8 VAL C 77 ARG C 82 0 SHEET 2 AA2 8 ASN C 10 ARG C 18 -1 N GLU C 14 O GLN C 81 SHEET 3 AA2 8 LYS C 51 ASN C 59 -1 O VAL C 58 N VAL C 11 SHEET 4 AA2 8 GLY C 40 PRO C 45 -1 N LEU C 42 O TRP C 55 SHEET 5 AA2 8 VAL D 38 PRO D 45 -1 O CYS D 43 N ILE C 41 SHEET 6 AA2 8 LYS D 51 ASN D 59 -1 O TRP D 55 N LEU D 42 SHEET 7 AA2 8 ASN D 10 ARG D 18 -1 N LEU D 15 O ILE D 54 SHEET 8 AA2 8 VAL D 77 ARG D 82 -1 O GLN D 81 N GLU D 14 SITE 1 AC1 10 ASN A 19 HIS A 20 GLY A 22 VAL A 23 SITE 2 AC1 10 MET A 24 CYS A 43 HOH A 206 HOH A 212 SITE 3 AC1 10 ASN B 37 VAL B 38 SITE 1 AC2 10 ASN A 37 VAL A 38 VAL B 17 ASN B 19 SITE 2 AC2 10 HIS B 20 GLY B 22 VAL B 23 MET B 24 SITE 3 AC2 10 HOH B 206 HOH B 213 SITE 1 AC3 10 VAL C 17 ASN C 19 HIS C 20 GLY C 22 SITE 2 AC3 10 VAL C 23 MET C 24 HOH C 202 HOH C 204 SITE 3 AC3 10 ASN D 37 VAL D 38 SITE 1 AC4 10 ASN C 37 VAL C 38 ASN D 19 HIS D 20 SITE 2 AC4 10 GLY D 22 VAL D 23 MET D 24 CYS D 43 SITE 3 AC4 10 HOH D 206 HOH D 208 CRYST1 110.519 74.510 63.270 90.00 97.58 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.000000 0.001204 0.00000 SCALE2 0.000000 0.013421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015945 0.00000