PDB Short entry for 5Z55 HEADER ONCOPROTEIN 17-JAN-18 5Z55 TITLE NMR SOLUTION STRUCTURE OF THE KRINGLE DOMAIN OF HUMAN RECEPTOR TITLE 2 TYROSINE KINASE-LIKE ORPHAN RECEPTOR 1 (ROR1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INACTIVE TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR COMPND 3 ROR1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: KRINGLE DOMAIN; COMPND 6 SYNONYM: TYROSINE KINASE-LIKE ORPHAN RECEPTOR 1,NEUROTROPHIC TYROSINE COMPND 7 KINASE,RECEPTOR-RELATED 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROR1, NTRKR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROR1, KRINGLE, ONCOPROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.MA,K.F.HU REVDAT 2 14-JUN-23 5Z55 1 REMARK REVDAT 1 16-MAY-18 5Z55 0 JRNL AUTH X.MA,Y.ZHANG,B.LIU,J.YANG,K.HU JRNL TITL BACKBONE AND SIDE-CHAIN CHEMICAL SHIFT ASSIGNMENTS OF THE JRNL TITL 2 KRINGLE DOMAIN OF HUMAN RECEPTOR TYROSINE KINASE-LIKE ORPHAN JRNL TITL 3 RECEPTOR 1 (ROR1). JRNL REF BIOMOL NMR ASSIGN V. 12 145 2018 JRNL REFN ESSN 1874-270X JRNL PMID 29313214 JRNL DOI 10.1007/S12104-017-9797-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006427. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM 99%U-13C, U-15N ROR1KR, REMARK 210 94% H2O/6% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HBHA(CO)NH; H(CCO)NH; C(CO)NH; REMARK 210 CBCA (CO) NH; (HALI)CALICAROHARO- REMARK 210 TOCSY; HNCA; 3D HNCACB; 3D HNCO; REMARK 210 3D HCCH-TOCSY; 3D CCH-TOCSY; 2D REMARK 210 1H-15N HSQC; 2D 1H-13C CT-HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, PINE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 96 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 7 -127.99 42.64 REMARK 500 1 PHE A 38 99.27 -162.02 REMARK 500 2 SER A 7 -124.20 43.53 REMARK 500 2 PHE A 38 102.56 -160.53 REMARK 500 3 SER A 7 -131.27 41.84 REMARK 500 3 PHE A 38 99.48 -162.00 REMARK 500 4 SER A 7 -131.51 55.78 REMARK 500 4 PHE A 38 98.94 -160.84 REMARK 500 5 SER A 7 -107.92 56.98 REMARK 500 5 PHE A 38 101.44 -162.35 REMARK 500 6 SER A 7 -133.35 56.17 REMARK 500 7 SER A 7 -115.05 55.52 REMARK 500 7 PHE A 38 101.69 -162.79 REMARK 500 8 SER A 7 -137.64 55.35 REMARK 500 8 PHE A 38 100.30 -162.24 REMARK 500 9 LYS A 3 -93.12 55.40 REMARK 500 9 SER A 7 -132.15 59.46 REMARK 500 9 PHE A 38 102.40 -161.68 REMARK 500 10 SER A 7 -136.73 73.95 REMARK 500 10 PHE A 38 99.96 -161.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27240 RELATED DB: BMRB DBREF 5Z55 A 3 85 UNP Q01973 ROR1_HUMAN 312 394 SEQADV 5Z55 GLY A 1 UNP Q01973 EXPRESSION TAG SEQADV 5Z55 SER A 2 UNP Q01973 EXPRESSION TAG SEQRES 1 A 85 GLY SER LYS CYS TYR ASN SER THR GLY VAL ASP TYR ARG SEQRES 2 A 85 GLY THR VAL SER VAL THR LYS SER GLY ARG GLN CYS GLN SEQRES 3 A 85 PRO TRP ASN SER GLN TYR PRO HIS THR HIS THR PHE THR SEQRES 4 A 85 ALA LEU ARG PHE PRO GLU LEU ASN GLY GLY HIS SER TYR SEQRES 5 A 85 CYS ARG ASN PRO GLY ASN GLN LYS GLU ALA PRO TRP CYS SEQRES 6 A 85 PHE THR LEU ASP GLU ASN PHE LYS SER ASP LEU CYS ASP SEQRES 7 A 85 ILE PRO ALA CYS ASP SER LYS HELIX 1 AA1 PHE A 43 ASN A 47 5 5 HELIX 2 AA2 ASN A 55 GLN A 59 5 5 SHEET 1 AA1 2 TRP A 64 PHE A 66 0 SHEET 2 AA1 2 SER A 74 LEU A 76 -1 O ASP A 75 N CYS A 65 SSBOND 1 CYS A 4 CYS A 82 1555 1555 2.03 SSBOND 2 CYS A 25 CYS A 65 1555 1555 2.02 SSBOND 3 CYS A 53 CYS A 77 1555 1555 2.02 CISPEP 1 TYR A 32 PRO A 33 1 0.17 CISPEP 2 TYR A 32 PRO A 33 2 0.37 CISPEP 3 TYR A 32 PRO A 33 3 0.13 CISPEP 4 TYR A 32 PRO A 33 4 0.18 CISPEP 5 TYR A 32 PRO A 33 5 0.38 CISPEP 6 TYR A 32 PRO A 33 6 0.45 CISPEP 7 TYR A 32 PRO A 33 7 0.10 CISPEP 8 TYR A 32 PRO A 33 8 0.06 CISPEP 9 TYR A 32 PRO A 33 9 0.37 CISPEP 10 TYR A 32 PRO A 33 10 0.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000