PDB Short entry for 5ZLG HEADER OXIDOREDUCTASE 27-MAR-18 5ZLG TITLE HUMAN DUODENAL CYTOCHROME B (DCYTB) IN ZINC ION AND ASCORBATE BOUND TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B REDUCTASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUODENAL CYTOCHROME B,FERRIC-CHELATE REDUCTASE 3; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYBRD1, DCYTB, FRRS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21 STAR (DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GANASEN,H.TOGASHI,G.A.MAUK,Y.SHIRO,H.SAWAI,H.SUGIMOTO REVDAT 4 22-NOV-23 5ZLG 1 HETSYN REVDAT 3 29-JUL-20 5ZLG 1 REMARK SITE REVDAT 2 28-AUG-19 5ZLG 1 REMARK REVDAT 1 31-OCT-18 5ZLG 0 JRNL AUTH M.GANASEN,H.TOGASHI,H.TAKEDA,H.ASAKURA,T.TOSHA,K.YAMASHITA, JRNL AUTH 2 K.HIRATA,Y.NARIAI,T.URANO,X.YUAN,I.HAMZA,A.G.MAUK,Y.SHIRO, JRNL AUTH 3 H.SUGIMOTO,H.SAWAI JRNL TITL STRUCTURAL BASIS FOR PROMOTION OF DUODENAL IRON ABSORPTION JRNL TITL 2 BY ENTERIC FERRIC REDUCTASE WITH ASCORBATE. JRNL REF COMMUN BIOL V. 1 120 2018 JRNL REFN ESSN 2399-3642 JRNL PMID 30272000 JRNL DOI 10.1038/S42003-018-0121-8 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1188 - 6.0270 1.00 752 41 0.1738 0.1596 REMARK 3 2 6.0270 - 4.7858 1.00 750 40 0.2150 0.2836 REMARK 3 3 4.7858 - 4.1814 0.99 746 37 0.1993 0.2968 REMARK 3 4 4.1814 - 3.7993 1.00 731 41 0.1669 0.2027 REMARK 3 5 3.7993 - 3.5272 1.00 747 35 0.1876 0.2133 REMARK 3 6 3.5272 - 3.3193 1.00 745 33 0.2039 0.2403 REMARK 3 7 3.3193 - 3.1531 1.00 731 42 0.2251 0.3047 REMARK 3 8 3.1531 - 3.0159 1.00 741 39 0.2201 0.2992 REMARK 3 9 3.0159 - 2.8998 1.00 746 39 0.2524 0.3491 REMARK 3 10 2.8998 - 2.7998 1.00 751 34 0.2900 0.3045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1989 REMARK 3 ANGLE : 1.248 2743 REMARK 3 CHIRALITY : 0.048 301 REMARK 3 PLANARITY : 0.006 320 REMARK 3 DIHEDRAL : 13.885 1076 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:51) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2085 28.9972 4.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.3873 T22: 0.2885 REMARK 3 T33: 0.1849 T12: -0.0193 REMARK 3 T13: 0.1868 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.1639 L22: 1.8752 REMARK 3 L33: 3.3446 L12: -0.4106 REMARK 3 L13: -1.4605 L23: -0.3145 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: 0.3220 S13: -0.2546 REMARK 3 S21: -0.2227 S22: -0.0295 S23: 0.0737 REMARK 3 S31: 0.3249 S32: -0.2460 S33: 0.1714 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 52:77) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3249 44.2138 5.0101 REMARK 3 T TENSOR REMARK 3 T11: 0.4841 T22: 0.1908 REMARK 3 T33: 0.0995 T12: 0.1906 REMARK 3 T13: 0.0434 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.1550 L22: 0.7113 REMARK 3 L33: 0.8667 L12: -0.1214 REMARK 3 L13: 0.0818 L23: 0.5081 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.1862 S13: 0.2229 REMARK 3 S21: -0.4902 S22: -0.1017 S23: -0.1830 REMARK 3 S31: -0.4507 S32: -0.0970 S33: -0.0121 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 78:138) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4087 31.7715 9.4858 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.2473 REMARK 3 T33: 0.1635 T12: 0.1266 REMARK 3 T13: 0.0016 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 1.9486 L22: 2.1696 REMARK 3 L33: 1.5626 L12: -0.7917 REMARK 3 L13: -0.3431 L23: -0.4523 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.3131 S13: -0.3917 REMARK 3 S21: -0.3626 S22: -0.1516 S23: 0.2842 REMARK 3 S31: -0.1298 S32: -0.4042 S33: 0.0270 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 139:155) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3867 53.8790 10.3756 REMARK 3 T TENSOR REMARK 3 T11: 0.9510 T22: 0.7625 REMARK 3 T33: 0.5050 T12: 0.4905 REMARK 3 T13: -0.0285 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 0.6110 L22: 3.4852 REMARK 3 L33: 3.1354 L12: -0.9747 REMARK 3 L13: -0.6252 L23: 0.7811 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.1728 S13: 0.1309 REMARK 3 S21: -0.4361 S22: -0.1333 S23: 0.6212 REMARK 3 S31: -0.5513 S32: -0.6003 S33: 0.0994 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 156:186) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8042 32.2162 16.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0230 REMARK 3 T33: 0.1391 T12: 0.0085 REMARK 3 T13: 0.1103 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.9450 L22: 0.2217 REMARK 3 L33: 0.4890 L12: -0.0867 REMARK 3 L13: -0.1180 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.1136 S13: -0.0897 REMARK 3 S21: -0.0584 S22: 0.0166 S23: -0.0333 REMARK 3 S31: -0.0740 S32: -0.0246 S33: 0.2404 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 187:230) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3720 35.4236 13.5425 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.1453 REMARK 3 T33: 0.1191 T12: -0.0416 REMARK 3 T13: 0.1424 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.8509 L22: 0.7915 REMARK 3 L33: 1.2387 L12: -0.2214 REMARK 3 L13: -0.5568 L23: 0.1300 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0326 S13: -0.0241 REMARK 3 S21: -0.0670 S22: -0.0512 S23: -0.0268 REMARK 3 S31: -0.1770 S32: 0.0492 S33: -0.0732 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 401) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3975 23.2449 13.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.2666 REMARK 3 T33: 0.2043 T12: 0.0445 REMARK 3 T13: 0.0856 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 4.3671 L22: 2.7736 REMARK 3 L33: 2.3819 L12: -0.6425 REMARK 3 L13: -2.0100 L23: -0.7898 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0616 S13: -0.1317 REMARK 3 S21: -0.0287 S22: -0.0204 S23: 0.1012 REMARK 3 S31: 0.0097 S32: -0.1295 S33: 0.0878 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 402) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8877 48.4980 9.8889 REMARK 3 T TENSOR REMARK 3 T11: 0.4582 T22: 0.2779 REMARK 3 T33: 0.1857 T12: 0.1311 REMARK 3 T13: -0.0458 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 1.2956 L22: 4.0544 REMARK 3 L33: 3.9360 L12: 0.1547 REMARK 3 L13: 0.1471 L23: 1.6895 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.1001 S13: 0.1303 REMARK 3 S21: -0.5738 S22: -0.1265 S23: 0.2101 REMARK 3 S31: -0.5531 S32: -0.2442 S33: 0.0969 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 403:404) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5694 13.6638 12.7476 REMARK 3 T TENSOR REMARK 3 T11: 0.4478 T22: 0.7460 REMARK 3 T33: 0.5215 T12: 0.1868 REMARK 3 T13: -0.1113 T23: -0.2358 REMARK 3 L TENSOR REMARK 3 L11: 3.0685 L22: 3.4591 REMARK 3 L33: 8.5826 L12: 1.4805 REMARK 3 L13: 1.3605 L23: 2.3527 REMARK 3 S TENSOR REMARK 3 S11: 0.5584 S12: 0.1310 S13: -1.4759 REMARK 3 S21: -0.6603 S22: -0.3239 S23: 0.5326 REMARK 3 S31: 0.9693 S32: 0.4244 S33: -0.2329 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 405) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3925 57.0622 10.2902 REMARK 3 T TENSOR REMARK 3 T11: 0.7903 T22: 0.4998 REMARK 3 T33: 0.7753 T12: 0.0871 REMARK 3 T13: 0.0028 T23: 0.1973 REMARK 3 L TENSOR REMARK 3 L11: 8.6871 L22: 2.3091 REMARK 3 L33: 8.3583 L12: 2.1692 REMARK 3 L13: 1.0888 L23: 3.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.2676 S13: 0.4711 REMARK 3 S21: 0.1016 S22: -0.0759 S23: -0.0283 REMARK 3 S31: -0.6781 S32: -0.0904 S33: 0.0370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.114 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 49.58 REMARK 200 R MERGE (I) : 1.60800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 48.81 REMARK 200 R MERGE FOR SHELL (I) : 21.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O7G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(V/V) JEFFAMINE ED-2003, 0.1 M REMARK 280 HEPES, PH 6.5, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.59000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.59000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.03482 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.73477 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 231 REMARK 465 SER A 232 REMARK 465 THR A 233 REMARK 465 ILE A 234 REMARK 465 LEU A 235 REMARK 465 HIS A 236 REMARK 465 PRO A 237 REMARK 465 ASN A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 THR A 241 REMARK 465 GLU A 242 REMARK 465 GLN A 243 REMARK 465 GLY A 244 REMARK 465 ALA A 245 REMARK 465 ARG A 246 REMARK 465 GLY A 247 REMARK 465 SER A 248 REMARK 465 MET A 249 REMARK 465 PRO A 250 REMARK 465 ALA A 251 REMARK 465 TYR A 252 REMARK 465 SER A 253 REMARK 465 GLY A 254 REMARK 465 ASN A 255 REMARK 465 ASN A 256 REMARK 465 MET A 257 REMARK 465 ASP A 258 REMARK 465 LYS A 259 REMARK 465 SER A 260 REMARK 465 ASP A 261 REMARK 465 SER A 262 REMARK 465 GLU A 263 REMARK 465 LEU A 264 REMARK 465 ASN A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 VAL A 268 REMARK 465 ALA A 269 REMARK 465 ALA A 270 REMARK 465 ARG A 271 REMARK 465 LYS A 272 REMARK 465 ARG A 273 REMARK 465 ASN A 274 REMARK 465 LEU A 275 REMARK 465 ALA A 276 REMARK 465 LEU A 277 REMARK 465 ASP A 278 REMARK 465 GLU A 279 REMARK 465 ALA A 280 REMARK 465 GLY A 281 REMARK 465 GLN A 282 REMARK 465 ARG A 283 REMARK 465 SER A 284 REMARK 465 THR A 285 REMARK 465 MET A 286 REMARK 465 VAL A 287 REMARK 465 GLU A 288 REMARK 465 LEU A 289 REMARK 465 VAL A 290 REMARK 465 PRO A 291 REMARK 465 ARG A 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 -74.03 -66.98 REMARK 500 ARG A 35 -158.37 -91.93 REMARK 500 ASP A 41 114.49 -170.62 REMARK 500 TRP A 73 2.82 -67.65 REMARK 500 LYS A 76 61.38 -100.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 50 NE2 REMARK 620 2 HEM A 401 NA 84.2 REMARK 620 3 HEM A 401 NB 80.0 84.2 REMARK 620 4 HEM A 401 NC 94.1 178.3 95.1 REMARK 620 5 HEM A 401 ND 93.8 90.6 172.2 90.0 REMARK 620 6 HIS A 120 NE2 170.1 88.8 92.3 92.8 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HEM A 402 NA 92.1 REMARK 620 3 HEM A 402 NB 78.7 90.9 REMARK 620 4 HEM A 402 NC 88.9 178.4 88.0 REMARK 620 5 HEM A 402 ND 100.0 88.8 178.7 92.3 REMARK 620 6 HIS A 159 NE2 172.9 90.9 94.8 88.0 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 108 NE2 REMARK 620 2 ASC A 404 O2 89.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZLE RELATED DB: PDB REMARK 900 SUBSTRATE-FREE FORM DBREF 5ZLG A 1 286 UNP Q53TN4 CYBR1_HUMAN 1 286 SEQADV 5ZLG VAL A 287 UNP Q53TN4 EXPRESSION TAG SEQADV 5ZLG GLU A 288 UNP Q53TN4 EXPRESSION TAG SEQADV 5ZLG LEU A 289 UNP Q53TN4 EXPRESSION TAG SEQADV 5ZLG VAL A 290 UNP Q53TN4 EXPRESSION TAG SEQADV 5ZLG PRO A 291 UNP Q53TN4 EXPRESSION TAG SEQADV 5ZLG ARG A 292 UNP Q53TN4 EXPRESSION TAG SEQRES 1 A 292 MET ALA MET GLU GLY TYR TRP ARG PHE LEU ALA LEU LEU SEQRES 2 A 292 GLY SER ALA LEU LEU VAL GLY PHE LEU SER VAL ILE PHE SEQRES 3 A 292 ALA LEU VAL TRP VAL LEU HIS TYR ARG GLU GLY LEU GLY SEQRES 4 A 292 TRP ASP GLY SER ALA LEU GLU PHE ASN TRP HIS PRO VAL SEQRES 5 A 292 LEU MET VAL THR GLY PHE VAL PHE ILE GLN GLY ILE ALA SEQRES 6 A 292 ILE ILE VAL TYR ARG LEU PRO TRP THR TRP LYS CYS SER SEQRES 7 A 292 LYS LEU LEU MET LYS SER ILE HIS ALA GLY LEU ASN ALA SEQRES 8 A 292 VAL ALA ALA ILE LEU ALA ILE ILE SER VAL VAL ALA VAL SEQRES 9 A 292 PHE GLU ASN HIS ASN VAL ASN ASN ILE ALA ASN MET TYR SEQRES 10 A 292 SER LEU HIS SER TRP VAL GLY LEU ILE ALA VAL ILE CYS SEQRES 11 A 292 TYR LEU LEU GLN LEU LEU SER GLY PHE SER VAL PHE LEU SEQRES 12 A 292 LEU PRO TRP ALA PRO LEU SER LEU ARG ALA PHE LEU MET SEQRES 13 A 292 PRO ILE HIS VAL TYR SER GLY ILE VAL ILE PHE GLY THR SEQRES 14 A 292 VAL ILE ALA THR ALA LEU MET GLY LEU THR GLU LYS LEU SEQRES 15 A 292 ILE PHE SER LEU ARG ASP PRO ALA TYR SER THR PHE PRO SEQRES 16 A 292 PRO GLU GLY VAL PHE VAL ASN THR LEU GLY LEU LEU ILE SEQRES 17 A 292 LEU VAL PHE GLY ALA LEU ILE PHE TRP ILE VAL THR ARG SEQRES 18 A 292 PRO GLN TRP LYS ARG PRO LYS GLU PRO ASN SER THR ILE SEQRES 19 A 292 LEU HIS PRO ASN GLY GLY THR GLU GLN GLY ALA ARG GLY SEQRES 20 A 292 SER MET PRO ALA TYR SER GLY ASN ASN MET ASP LYS SER SEQRES 21 A 292 ASP SER GLU LEU ASN SER GLU VAL ALA ALA ARG LYS ARG SEQRES 22 A 292 ASN LEU ALA LEU ASP GLU ALA GLY GLN ARG SER THR MET SEQRES 23 A 292 VAL GLU LEU VAL PRO ARG HET HEM A 401 43 HET HEM A 402 43 HET ZN A 403 1 HET ASC A 404 12 HET ASC A 405 12 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETNAM ASC ASCORBIC ACID HETSYN HEM HEME HETSYN ASC VITAMIN C FORMUL 2 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ZN ZN 2+ FORMUL 5 ASC 2(C6 H8 O6) FORMUL 7 HOH *3(H2 O) HELIX 1 AA1 TYR A 6 HIS A 33 1 28 HELIX 2 AA2 SER A 43 ASN A 48 1 6 HELIX 3 AA3 ASN A 48 GLY A 57 1 10 HELIX 4 AA4 VAL A 59 ILE A 67 1 9 HELIX 5 AA5 VAL A 68 TRP A 75 5 8 HELIX 6 AA6 SER A 78 ASN A 112 1 35 HELIX 7 AA7 SER A 118 PHE A 142 1 25 HELIX 8 AA8 PRO A 148 LEU A 186 1 39 HELIX 9 AA9 ALA A 190 PHE A 194 5 5 HELIX 10 AB1 PRO A 195 THR A 220 1 26 HELIX 11 AB2 ARG A 221 LYS A 225 5 5 LINK NE2 HIS A 50 FE HEM A 401 1555 1555 2.08 LINK NE2 HIS A 86 FE HEM A 402 1555 1555 2.06 LINK NE2 HIS A 108 ZN ZN A 403 1555 1555 2.01 LINK NE2 HIS A 120 FE HEM A 401 1555 1555 2.01 LINK NE2 HIS A 159 FE HEM A 402 1555 1555 2.17 LINK ZN ZN A 403 O2 ASC A 404 1555 1555 2.21 CISPEP 1 GLY A 42 SER A 43 0 13.15 CISPEP 2 ASP A 188 PRO A 189 0 2.29 CRYST1 65.180 115.570 48.600 90.00 118.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015342 0.000000 0.008309 0.00000 SCALE2 0.000000 0.008653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023400 0.00000