PDB Short entry for 5ZRO HEADER HYDROLASE 24-APR-18 5ZRO TITLE M. SMEGMATIS ANTIMUTATOR PROTEIN MUTT2 IN COMPLEX WITH 5MDCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MUTATOR PROTEIN MUTT2/NUDIX HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MUTT2, MSMEI_5016; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS NUDIX HYDROLASE, MUTT, ANTIMUTATOR, CTP PYROPHOSPHORYLASE, 5MDCTP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SINGH,S.M.ARIF,P.B.SANG,U.VARSHNEY,M.VIJAYAN REVDAT 2 06-NOV-19 5ZRO 1 JRNL REVDAT 1 24-APR-19 5ZRO 0 JRNL AUTH A.SINGH,S.MOHAMMAD ARIF,P.BIAK SANG,U.VARSHNEY,M.VIJAYAN JRNL TITL STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND CATALYTIC JRNL TITL 2 MECHANISM OF MYCOBACTERIAL NUCLEOTIDE POOL SANITIZING ENZYME JRNL TITL 3 MUTT2. JRNL REF J.STRUCT.BIOL. V. 204 449 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 30312643 JRNL DOI 10.1016/J.JSB.2018.10.002 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 44340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2031 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1953 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2782 ; 1.404 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4461 ; 0.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 7.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;28.862 ;22.530 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 303 ;13.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2288 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 443 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 3.910 ; 1.890 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1035 ; 3.722 ; 1.875 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1295 ; 4.540 ; 2.832 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1296 ; 4.551 ; 2.836 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 995 ; 7.244 ; 2.364 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 995 ; 7.243 ; 2.363 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1488 ; 8.527 ; 3.381 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2441 ; 8.558 ;18.244 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2442 ; 8.557 ;18.250 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3984 ; 7.331 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 97 ;40.055 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4159 ;19.625 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 127 B 1 127 6935 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 24.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.6, 30% W/V PEG 4000, MICROBATCH, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 129 REMARK 465 ARG A 130 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ARG B 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CE NZ REMARK 470 ARG A 83 NE CZ NH1 NH2 REMARK 470 ARG A 87 NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 THR B 2 OG1 CG2 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 -167.96 -160.90 REMARK 500 ASN B 74 -168.01 -166.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 445 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 446 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 6.21 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 523 B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 523 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 523 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZRC RELATED DB: PDB DBREF 5ZRO A 1 130 UNP I7FJF7 I7FJF7_MYCS2 1 130 DBREF 5ZRO B 1 130 UNP I7FJF7 I7FJF7_MYCS2 1 130 SEQADV 5ZRO MET A -19 UNP I7FJF7 INITIATING METHIONINE SEQADV 5ZRO GLY A -18 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER A -17 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER A -16 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -15 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -14 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -13 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -12 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -11 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A -10 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER A -9 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER A -8 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO GLY A -7 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO LEU A -6 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO VAL A -5 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO PRO A -4 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO ARG A -3 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO GLY A -2 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER A -1 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS A 0 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO MET B -19 UNP I7FJF7 INITIATING METHIONINE SEQADV 5ZRO GLY B -18 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER B -17 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER B -16 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -15 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -14 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -13 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -12 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -11 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B -10 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER B -9 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER B -8 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO GLY B -7 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO LEU B -6 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO VAL B -5 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO PRO B -4 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO ARG B -3 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO GLY B -2 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO SER B -1 UNP I7FJF7 EXPRESSION TAG SEQADV 5ZRO HIS B 0 UNP I7FJF7 EXPRESSION TAG SEQRES 1 A 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 150 LEU VAL PRO ARG GLY SER HIS MET THR LYS GLN ILE VAL SEQRES 3 A 150 VAL ALA GLY ALA LEU ILE SER ARG GLY THR LEU LEU VAL SEQRES 4 A 150 ALA GLN ARG ASP ARG PRO ALA GLU LEU ALA GLY LEU TRP SEQRES 5 A 150 GLU LEU PRO GLY GLY LYS VAL THR PRO GLY GLU SER ASP SEQRES 6 A 150 ALA ASP ALA LEU ALA ARG GLU LEU ARG GLU GLU LEU GLY SEQRES 7 A 150 VAL ASP VAL ALA VAL GLY GLU ARG LEU GLY ALA ASP VAL SEQRES 8 A 150 ALA LEU ASN ASP ALA MET THR LEU ARG ALA TYR ARG VAL SEQRES 9 A 150 THR LEU ARG SER GLY SER PRO HIS PRO HIS ASP HIS ARG SEQRES 10 A 150 ALA LEU ARG TRP VAL GLY ALA ASP GLU ILE ASP GLY LEU SEQRES 11 A 150 ALA TRP VAL PRO ALA ASP ARG ALA TRP VAL PRO ASP LEU SEQRES 12 A 150 VAL ALA ALA LEU SER GLY ARG SEQRES 1 B 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 150 LEU VAL PRO ARG GLY SER HIS MET THR LYS GLN ILE VAL SEQRES 3 B 150 VAL ALA GLY ALA LEU ILE SER ARG GLY THR LEU LEU VAL SEQRES 4 B 150 ALA GLN ARG ASP ARG PRO ALA GLU LEU ALA GLY LEU TRP SEQRES 5 B 150 GLU LEU PRO GLY GLY LYS VAL THR PRO GLY GLU SER ASP SEQRES 6 B 150 ALA ASP ALA LEU ALA ARG GLU LEU ARG GLU GLU LEU GLY SEQRES 7 B 150 VAL ASP VAL ALA VAL GLY GLU ARG LEU GLY ALA ASP VAL SEQRES 8 B 150 ALA LEU ASN ASP ALA MET THR LEU ARG ALA TYR ARG VAL SEQRES 9 B 150 THR LEU ARG SER GLY SER PRO HIS PRO HIS ASP HIS ARG SEQRES 10 B 150 ALA LEU ARG TRP VAL GLY ALA ASP GLU ILE ASP GLY LEU SEQRES 11 B 150 ALA TRP VAL PRO ALA ASP ARG ALA TRP VAL PRO ASP LEU SEQRES 12 B 150 VAL ALA ALA LEU SER GLY ARG HET 523 A 201 29 HET 523 B 201 25 HET EDO B 202 4 HETNAM 523 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN HETNAM 2 523 TRIPHOSPHATE) HETNAM EDO 1,2-ETHANEDIOL HETSYN 523 5-METHYL-2'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 523 2(C10 H19 N3 O13 P3 1+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *311(H2 O) HELIX 1 AA1 SER A 44 GLY A 58 1 15 HELIX 2 AA2 GLY A 103 ILE A 107 5 5 HELIX 3 AA3 PRO A 114 ALA A 118 5 5 HELIX 4 AA4 TRP A 119 SER A 128 1 10 HELIX 5 AA5 SER B 44 GLY B 58 1 15 HELIX 6 AA6 GLY B 103 ASP B 108 1 6 HELIX 7 AA7 VAL B 113 ALA B 118 1 6 HELIX 8 AA8 TRP B 119 GLY B 129 1 11 SHEET 1 AA1 5 TRP A 32 GLU A 33 0 SHEET 2 AA1 5 THR A 16 GLN A 21 -1 N ALA A 20 O GLU A 33 SHEET 3 AA1 5 GLN A 4 SER A 13 -1 N LEU A 11 O LEU A 18 SHEET 4 AA1 5 MET A 77 SER A 88 1 O TYR A 82 N ALA A 10 SHEET 5 AA1 5 ASP A 60 ASN A 74 -1 N VAL A 71 O LEU A 79 SHEET 1 AA2 4 GLY A 36 LYS A 38 0 SHEET 2 AA2 4 GLN A 4 SER A 13 -1 N VAL A 7 O GLY A 37 SHEET 3 AA2 4 THR A 16 GLN A 21 -1 O LEU A 18 N LEU A 11 SHEET 4 AA2 4 ALA A 98 VAL A 102 -1 O VAL A 102 N LEU A 17 SHEET 1 AA3 5 TRP B 32 GLU B 33 0 SHEET 2 AA3 5 THR B 16 GLN B 21 -1 N ALA B 20 O GLU B 33 SHEET 3 AA3 5 GLN B 4 SER B 13 -1 N SER B 13 O THR B 16 SHEET 4 AA3 5 MET B 77 SER B 88 1 O THR B 78 N VAL B 6 SHEET 5 AA3 5 ASP B 60 ALA B 72 -1 N GLU B 65 O ARG B 83 SHEET 1 AA4 4 GLY B 36 LYS B 38 0 SHEET 2 AA4 4 GLN B 4 SER B 13 -1 N VAL B 7 O GLY B 37 SHEET 3 AA4 4 THR B 16 GLN B 21 -1 O THR B 16 N SER B 13 SHEET 4 AA4 4 ALA B 98 VAL B 102 -1 O ALA B 98 N GLN B 21 CISPEP 1 ARG A 24 PRO A 25 0 -16.93 CISPEP 2 ARG B 24 PRO B 25 0 -15.25 SITE 1 AC1 21 VAL A 6 ARG A 22 ARG A 24 LEU A 28 SITE 2 AC1 21 GLU A 33 LEU A 34 GLY A 36 GLY A 37 SITE 3 AC1 21 LYS A 38 GLU A 52 LEU A 73 LEU A 79 SITE 4 AC1 21 ALA A 115 ASP A 116 HOH A 301 HOH A 302 SITE 5 AC1 21 HOH A 303 HOH A 331 HOH A 364 HOH A 372 SITE 6 AC1 21 HOH A 375 SITE 1 AC2 16 ARG B 22 ARG B 24 GLU B 33 LEU B 34 SITE 2 AC2 16 GLY B 37 LYS B 38 LEU B 73 LEU B 79 SITE 3 AC2 16 VAL B 113 ALA B 115 ASP B 116 HOH B 301 SITE 4 AC2 16 HOH B 345 HOH B 358 HOH B 377 HOH B 406 SITE 1 AC3 7 ALA B 62 VAL B 63 GLY B 64 ARG B 83 SITE 2 AC3 7 VAL B 84 THR B 85 HOH B 340 CRYST1 31.610 72.760 57.860 90.00 104.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031636 0.000000 0.008299 0.00000 SCALE2 0.000000 0.013744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017868 0.00000