PDB Short entry for 5ZUN HEADER HYDROLASE/INHIBITOR 08-MAY-18 5ZUN TITLE CRYSTAL STRUCTURE OF HUMAN MONOACYLGLYCEROL LIPASE IN COMPLEX WITH TITLE 2 COMPOUND 3L COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOGLYCERIDE LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MGL,HU-K5,LYSOPHOSPHOLIPASE HOMOLOG,LYSOPHOSPHOLIPASE-LIKE, COMPND 5 MONOACYLGLYCEROL LIPASE,MAGL; COMPND 6 EC: 3.1.1.23; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOACYLGLYCEROL LIPASE, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SOGABE,Y.ZAMA,W.LANE,G.SNELL REVDAT 3 22-NOV-23 5ZUN 1 REMARK REVDAT 2 07-NOV-18 5ZUN 1 JRNL REVDAT 1 17-OCT-18 5ZUN 0 JRNL AUTH J.AIDA,M.FUSHIMI,T.KUSUMOTO,H.SUGIYAMA,N.ARIMURA,S.IKEDA, JRNL AUTH 2 M.SASAKI,S.SOGABE,K.AOYAMA,T.KOIKE JRNL TITL DESIGN, SYNTHESIS, AND EVALUATION OF PIPERAZINYL JRNL TITL 2 PYRROLIDIN-2-ONES AS A NOVEL SERIES OF REVERSIBLE JRNL TITL 3 MONOACYLGLYCEROL LIPASE INHIBITORS JRNL REF J. MED. CHEM. V. 61 9205 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30251836 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00824 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 74657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2468 ; 0.011 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2291 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3357 ; 1.603 ; 1.765 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5380 ; 0.550 ; 1.732 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 5.832 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;27.758 ;19.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;13.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2781 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 456 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 0.834 ; 1.007 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1195 ; 0.833 ; 1.008 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1501 ; 1.424 ; 1.509 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1502 ; 1.428 ; 1.511 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 1.284 ; 1.185 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1274 ; 1.282 ; 1.185 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1840 ; 2.007 ; 1.692 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2766 ; 4.353 ;13.663 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2696 ; 4.001 ;12.948 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 295 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9288 20.0718 -1.3645 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0042 REMARK 3 T33: 0.0033 T12: 0.0047 REMARK 3 T13: 0.0041 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2329 L22: 0.6617 REMARK 3 L33: 0.6598 L12: -0.0208 REMARK 3 L13: -0.0394 L23: 0.1407 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0239 S13: -0.0025 REMARK 3 S21: 0.0038 S22: 0.0010 S23: 0.0065 REMARK 3 S31: -0.0132 S32: 0.0154 S33: 0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1300007684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78596 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.85200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3PE6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 10% PEG3350, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.57450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.61200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.57450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.61200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.12500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.57450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.61200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.12500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.57450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.61200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 THR A 296 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 THR A 299 REMARK 465 ALA A 300 REMARK 465 SER A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 625 O HOH A 675 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 13.71 87.83 REMARK 500 SER A 13 21.67 81.78 REMARK 500 GLU A 53 -151.15 -121.99 REMARK 500 SER A 122 -126.04 62.50 REMARK 500 GLU A 274 -162.04 -102.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 797 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9JX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 DBREF 5ZUN A 1 303 UNP Q99685 MGLL_HUMAN 1 303 SEQADV 5ZUN GLY A -1 UNP Q99685 EXPRESSION TAG SEQADV 5ZUN SER A 0 UNP Q99685 EXPRESSION TAG SEQADV 5ZUN ALA A 36 UNP Q99685 LYS 36 ENGINEERED MUTATION SEQADV 5ZUN SER A 169 UNP Q99685 LEU 169 ENGINEERED MUTATION SEQADV 5ZUN SER A 176 UNP Q99685 LEU 176 ENGINEERED MUTATION SEQRES 1 A 305 GLY SER MET PRO GLU GLU SER SER PRO ARG ARG THR PRO SEQRES 2 A 305 GLN SER ILE PRO TYR GLN ASP LEU PRO HIS LEU VAL ASN SEQRES 3 A 305 ALA ASP GLY GLN TYR LEU PHE CYS ARG TYR TRP ALA PRO SEQRES 4 A 305 THR GLY THR PRO LYS ALA LEU ILE PHE VAL SER HIS GLY SEQRES 5 A 305 ALA GLY GLU HIS SER GLY ARG TYR GLU GLU LEU ALA ARG SEQRES 6 A 305 MET LEU MET GLY LEU ASP LEU LEU VAL PHE ALA HIS ASP SEQRES 7 A 305 HIS VAL GLY HIS GLY GLN SER GLU GLY GLU ARG MET VAL SEQRES 8 A 305 VAL SER ASP PHE HIS VAL PHE VAL ARG ASP VAL LEU GLN SEQRES 9 A 305 HIS VAL ASP SER MET GLN LYS ASP TYR PRO GLY LEU PRO SEQRES 10 A 305 VAL PHE LEU LEU GLY HIS SER MET GLY GLY ALA ILE ALA SEQRES 11 A 305 ILE LEU THR ALA ALA GLU ARG PRO GLY HIS PHE ALA GLY SEQRES 12 A 305 MET VAL LEU ILE SER PRO LEU VAL LEU ALA ASN PRO GLU SEQRES 13 A 305 SER ALA THR THR PHE LYS VAL LEU ALA ALA LYS VAL LEU SEQRES 14 A 305 ASN SER VAL LEU PRO ASN LEU SER SER GLY PRO ILE ASP SEQRES 15 A 305 SER SER VAL LEU SER ARG ASN LYS THR GLU VAL ASP ILE SEQRES 16 A 305 TYR ASN SER ASP PRO LEU ILE CYS ARG ALA GLY LEU LYS SEQRES 17 A 305 VAL CYS PHE GLY ILE GLN LEU LEU ASN ALA VAL SER ARG SEQRES 18 A 305 VAL GLU ARG ALA LEU PRO LYS LEU THR VAL PRO PHE LEU SEQRES 19 A 305 LEU LEU GLN GLY SER ALA ASP ARG LEU CYS ASP SER LYS SEQRES 20 A 305 GLY ALA TYR LEU LEU MET GLU LEU ALA LYS SER GLN ASP SEQRES 21 A 305 LYS THR LEU LYS ILE TYR GLU GLY ALA TYR HIS VAL LEU SEQRES 22 A 305 HIS LYS GLU LEU PRO GLU VAL THR ASN SER VAL PHE HIS SEQRES 23 A 305 GLU ILE ASN MET TRP VAL SER GLN ARG THR ALA THR ALA SEQRES 24 A 305 GLY THR ALA SER PRO PRO HET 9JX A 401 32 HET PG4 A 402 13 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET CL A 411 1 HETNAM 9JX (4R)-1-(2'-CHLORO[1,1'-BIPHENYL]-3-YL)-4-[4-(1,3- HETNAM 2 9JX THIAZOLE-2-CARBONYL)PIPERAZIN-1-YL]PYRROLIDIN-2-ONE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9JX C24 H23 CL N4 O2 S FORMUL 3 PG4 C8 H18 O5 FORMUL 4 EDO 8(C2 H6 O2) FORMUL 12 CL CL 1- FORMUL 13 HOH *297(H2 O) HELIX 1 AA1 PRO A 15 LEU A 19 5 5 HELIX 2 AA2 HIS A 54 ARG A 57 5 4 HELIX 3 AA3 TYR A 58 LEU A 68 1 11 HELIX 4 AA4 PHE A 93 TYR A 111 1 19 HELIX 5 AA5 SER A 122 ARG A 135 1 14 HELIX 6 AA6 ASN A 152 ASN A 168 1 17 HELIX 7 AA7 ASP A 180 LEU A 184 5 5 HELIX 8 AA8 ASN A 187 SER A 196 1 10 HELIX 9 AA9 LYS A 206 LEU A 224 1 19 HELIX 10 AB1 PRO A 225 LEU A 227 5 3 HELIX 11 AB2 ASP A 243 ALA A 254 1 12 HELIX 12 AB3 VAL A 270 GLU A 274 5 5 HELIX 13 AB4 LEU A 275 ARG A 293 1 19 SHEET 1 AA1 8 HIS A 21 VAL A 23 0 SHEET 2 AA1 8 TYR A 29 TRP A 35 -1 O LEU A 30 N LEU A 22 SHEET 3 AA1 8 LEU A 70 HIS A 75 -1 O VAL A 72 N TRP A 35 SHEET 4 AA1 8 ALA A 43 SER A 48 1 N VAL A 47 O PHE A 73 SHEET 5 AA1 8 VAL A 116 HIS A 121 1 O LEU A 119 N SER A 48 SHEET 6 AA1 8 GLY A 141 ILE A 145 1 O VAL A 143 N LEU A 118 SHEET 7 AA1 8 PHE A 231 GLY A 236 1 O LEU A 232 N LEU A 144 SHEET 8 AA1 8 LYS A 259 TYR A 264 1 O THR A 260 N LEU A 233 SITE 1 AC1 24 GLY A 50 ALA A 51 GLU A 53 ARG A 57 SITE 2 AC1 24 MET A 88 HIS A 121 SER A 122 MET A 123 SITE 3 AC1 24 GLY A 177 PRO A 178 ILE A 179 SER A 181 SITE 4 AC1 24 LEU A 184 SER A 185 GLU A 190 VAL A 191 SITE 5 AC1 24 TYR A 194 LEU A 205 LEU A 241 VAL A 270 SITE 6 AC1 24 LYS A 273 PG4 A 402 HOH A 542 HOH A 585 SITE 1 AC2 6 THR A 158 9JX A 401 EDO A 403 HOH A 501 SITE 2 AC2 6 HOH A 519 HOH A 532 SITE 1 AC3 5 ILE A 179 ASP A 180 PG4 A 402 HOH A 522 SITE 2 AC3 5 HOH A 673 SITE 1 AC4 6 GLU A 190 HIS A 272 LYS A 273 PHE A 283 SITE 2 AC4 6 HOH A 546 HOH A 658 SITE 1 AC5 7 GLN A 12 GLY A 81 ARG A 87 LEU A 199 SITE 2 AC5 7 HOH A 565 HOH A 621 HOH A 677 SITE 1 AC6 5 ILE A 14 HOH A 563 HOH A 589 HOH A 597 SITE 2 AC6 5 HOH A 632 SITE 1 AC7 8 TYR A 34 HIS A 103 SER A 106 MET A 107 SITE 2 AC7 8 SER A 196 ARG A 202 HOH A 508 HOH A 574 SITE 1 AC8 5 HIS A 54 GLY A 56 ARG A 57 ILE A 193 SITE 2 AC8 5 ASP A 197 SITE 1 AC9 5 ARG A 9 THR A 10 PRO A 11 GLU A 84 SITE 2 AC9 5 GLY A 85 SITE 1 AD1 3 ASN A 215 ARG A 219 ARG A 222 SITE 1 AD2 3 HIS A 94 ARG A 219 HOH A 791 CRYST1 95.149 127.224 60.250 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016598 0.00000