PDB Short entry for 6A8R HEADER DNA BINDING PROTEIN/DNA 10-JUL-18 6A8R TITLE CRYSTAL STRUCTURE OF DUX4 HD2 DOMAIN ASSOCIATED WITH ERG DNA BINDING TITLE 2 SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE HOMEOBOX PROTEIN 4; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DOUBLE HOMEOBOX PROTEIN 10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*GP*AP*TP*GP*AP*GP*AP*TP*T)-3'); COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*AP*AP*TP*CP*TP*CP*AP*TP*CP*A)-3'); COMPND 12 CHAIN: F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUX4, DUX10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ACUTE LYMPHOBLASTIC LEUKEMIA, DUX4/IGH, ERG BINDING SITE, TGAT KEYWDS 2 REPEAT, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DONG,H.ZHANG,N.CHENG,G.MENG REVDAT 4 22-NOV-23 6A8R 1 REMARK REVDAT 3 20-FEB-19 6A8R 1 JRNL REVDAT 2 07-NOV-18 6A8R 1 JRNL REVDAT 1 24-OCT-18 6A8R 0 JRNL AUTH X.DONG,H.ZHANG,N.CHENG,K.LI,G.MENG JRNL TITL DUX4HD2-DNAERGSTRUCTURE REVEALS NEW INSIGHT INTO JRNL TITL 2 DUX4-RESPONSIVE-ELEMENT. JRNL REF LEUKEMIA V. 33 550 2019 JRNL REFN ESSN 1476-5551 JRNL PMID 30315230 JRNL DOI 10.1038/S41375-018-0273-Z REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1935 - 3.0601 0.99 2706 112 0.1622 0.1470 REMARK 3 2 3.0601 - 2.4293 0.99 2654 144 0.2224 0.2175 REMARK 3 3 2.4293 - 2.1224 0.99 2675 152 0.2219 0.2553 REMARK 3 4 2.1224 - 1.9284 1.00 2589 192 0.2362 0.2869 REMARK 3 5 1.9284 - 1.7902 1.00 2717 117 0.2814 0.3573 REMARK 3 6 1.7902 - 1.6847 1.00 2706 125 0.2783 0.3072 REMARK 3 7 1.6847 - 1.6003 0.96 2566 157 0.2829 0.3477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1444 REMARK 3 ANGLE : 1.227 2026 REMARK 3 CHIRALITY : 0.063 216 REMARK 3 PLANARITY : 0.010 198 REMARK 3 DIHEDRAL : 25.656 808 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6945 4.0005 -8.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.2408 REMARK 3 T33: 0.2644 T12: -0.0311 REMARK 3 T13: 0.0400 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3461 L22: 0.2433 REMARK 3 L33: 0.2599 L12: -0.0841 REMARK 3 L13: 0.0767 L23: 0.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: -0.0286 S13: -0.0452 REMARK 3 S21: -0.1670 S22: -0.0703 S23: 0.1221 REMARK 3 S31: -0.0033 S32: -0.0772 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2577 -19.6015 -19.6867 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.5122 REMARK 3 T33: 0.3602 T12: -0.0383 REMARK 3 T13: -0.0330 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.1042 L22: 0.5914 REMARK 3 L33: 1.5715 L12: -0.2367 REMARK 3 L13: -0.4775 L23: 0.5843 REMARK 3 S TENSOR REMARK 3 S11: -0.1603 S12: 1.1128 S13: -0.0434 REMARK 3 S21: -0.2247 S22: -0.5471 S23: 0.6146 REMARK 3 S31: 0.3217 S32: -0.8814 S33: -0.0318 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8635 -22.2201 -23.6671 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.5997 REMARK 3 T33: 0.2880 T12: 0.0342 REMARK 3 T13: -0.0101 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 0.6147 L22: 0.2984 REMARK 3 L33: 1.5034 L12: 0.4467 REMARK 3 L13: 0.4377 L23: 0.1727 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: 0.6845 S13: -0.1152 REMARK 3 S21: 0.2880 S22: 0.2564 S23: -0.3280 REMARK 3 S31: 0.5384 S32: 1.0336 S33: 0.0569 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2832 -15.5746 -30.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.6293 REMARK 3 T33: 0.3009 T12: -0.1406 REMARK 3 T13: 0.0507 T23: 0.1254 REMARK 3 L TENSOR REMARK 3 L11: 0.6916 L22: 0.2059 REMARK 3 L33: 0.1940 L12: 0.1769 REMARK 3 L13: -0.0713 L23: -0.2006 REMARK 3 S TENSOR REMARK 3 S11: 0.3046 S12: 1.1316 S13: 0.6099 REMARK 3 S21: -0.1585 S22: 0.2902 S23: 0.2455 REMARK 3 S31: -0.3984 S32: 0.2592 S33: 0.2609 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8400 -19.1748 -17.0501 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.3082 REMARK 3 T33: 0.3074 T12: 0.0200 REMARK 3 T13: 0.0072 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.0565 L22: 0.6813 REMARK 3 L33: 0.6877 L12: -0.1928 REMARK 3 L13: -0.1694 L23: 0.6749 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.1529 S13: 0.2115 REMARK 3 S21: 0.1321 S22: 0.2055 S23: -0.1373 REMARK 3 S31: 0.0799 S32: 0.7000 S33: 0.0381 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7872 -9.5802 1.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.4940 T22: 0.3283 REMARK 3 T33: 0.4476 T12: 0.0148 REMARK 3 T13: 0.0022 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.0313 L22: -0.0105 REMARK 3 L33: 0.0303 L12: 0.0379 REMARK 3 L13: -0.0110 L23: 0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.2082 S12: 0.1636 S13: -0.5590 REMARK 3 S21: 0.3578 S22: 0.0479 S23: -0.4677 REMARK 3 S31: 0.5302 S32: 0.2903 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5857 1.6063 6.8441 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.4828 REMARK 3 T33: 0.2971 T12: 0.1516 REMARK 3 T13: 0.1341 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 1.3669 L22: 0.5657 REMARK 3 L33: 1.3672 L12: 0.1731 REMARK 3 L13: 1.3078 L23: 0.3253 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: 0.2448 S13: 0.2149 REMARK 3 S21: 0.2980 S22: 0.3377 S23: 0.2848 REMARK 3 S31: -0.1562 S32: -0.8199 S33: 0.4291 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7524 5.0251 9.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.6674 T22: 0.2348 REMARK 3 T33: 0.3345 T12: 0.0419 REMARK 3 T13: -0.0302 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.1296 L22: 0.1128 REMARK 3 L33: 0.5974 L12: 0.0191 REMARK 3 L13: -0.0226 L23: 0.2322 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: -0.3340 S13: 0.2983 REMARK 3 S21: 0.8547 S22: 0.1983 S23: -0.1832 REMARK 3 S31: -0.7077 S32: -0.2778 S33: 0.0272 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0361 2.5117 -0.7914 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.2359 REMARK 3 T33: 0.2545 T12: 0.0563 REMARK 3 T13: 0.0453 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1418 L22: 0.3160 REMARK 3 L33: 0.2257 L12: 0.0300 REMARK 3 L13: -0.1760 L23: -0.0101 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.1552 S13: 0.2712 REMARK 3 S21: 0.0010 S22: 0.2243 S23: -0.2033 REMARK 3 S31: -0.3664 S32: -0.2360 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3668 3.5024 -8.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2078 REMARK 3 T33: 0.2520 T12: -0.0267 REMARK 3 T13: 0.0464 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.0789 L22: 0.1662 REMARK 3 L33: 0.6609 L12: -0.2334 REMARK 3 L13: 0.2245 L23: -0.2844 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.0372 S13: -0.0248 REMARK 3 S21: -0.0999 S22: -0.0515 S23: -0.1540 REMARK 3 S31: 0.0822 S32: -0.1626 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 63.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.91200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5Z2S, 5Z2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.39400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 465 GLY B 60 REMARK 465 GLY A 1 REMARK 465 GLY A 60 REMARK 465 DA E 16 REMARK 465 DT F 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 2 O HOH B 101 2.10 REMARK 500 O HOH B 136 O HOH B 137 2.14 REMARK 500 O HOH E 124 O HOH E 127 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 6 C1' DT E 6 N1 0.095 REMARK 500 DA E 11 N9 DA E 11 C4 -0.040 REMARK 500 DA F 12 C6 DA F 12 N6 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA E 11 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 23 117.75 -165.29 REMARK 500 ASP A 23 119.41 -167.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 6A8R B 1 60 UNP Q9UBX2 DUX4_HUMAN 94 153 DBREF 6A8R A 1 60 UNP Q9UBX2 DUX4_HUMAN 94 153 DBREF 6A8R E 6 16 PDB 6A8R 6A8R 6 16 DBREF 6A8R F 5 15 PDB 6A8R 6A8R 5 15 SEQRES 1 B 60 GLY ARG ARG LYS ARG THR ALA VAL THR GLY SER GLN THR SEQRES 2 B 60 ALA LEU LEU LEU ARG ALA PHE GLU LYS ASP ARG PHE PRO SEQRES 3 B 60 GLY ILE ALA ALA ARG GLU GLU LEU ALA ARG GLU THR GLY SEQRES 4 B 60 LEU PRO GLU SER ARG ILE GLN ILE TRP PHE GLN ASN ARG SEQRES 5 B 60 ARG ALA ARG HIS PRO GLY GLN GLY SEQRES 1 A 60 GLY ARG ARG LYS ARG THR ALA VAL THR GLY SER GLN THR SEQRES 2 A 60 ALA LEU LEU LEU ARG ALA PHE GLU LYS ASP ARG PHE PRO SEQRES 3 A 60 GLY ILE ALA ALA ARG GLU GLU LEU ALA ARG GLU THR GLY SEQRES 4 A 60 LEU PRO GLU SER ARG ILE GLN ILE TRP PHE GLN ASN ARG SEQRES 5 A 60 ARG ALA ARG HIS PRO GLY GLN GLY SEQRES 1 E 11 DT DG DA DT DG DA DG DA DT DT DA SEQRES 1 F 11 DT DA DA DT DC DT DC DA DT DC DA FORMUL 5 HOH *116(H2 O) HELIX 1 AA1 THR B 9 ASP B 23 1 15 HELIX 2 AA2 GLY B 27 GLY B 39 1 13 HELIX 3 AA3 PRO B 41 HIS B 56 1 16 HELIX 4 AA4 THR A 9 ASP A 23 1 15 HELIX 5 AA5 GLY A 27 GLY A 39 1 13 HELIX 6 AA6 PRO A 41 HIS A 56 1 16 CRYST1 32.550 32.550 126.591 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030722 0.017737 0.000000 0.00000 SCALE2 0.000000 0.035475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007899 0.00000