PDB Short entry for 6AF0 HEADER TRANSCRIPTION 07-AUG-18 6AF0 TITLE STRUCTURE OF CTR9, PAF1 AND CDC73 TERNARY COMPLEX FROM MYCELIOPHTHORA TITLE 2 THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTR9 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PAF1 PROTEIN; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CDC73 PROTEIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / SOURCE 3 BCRC 31852 / DSM 1799); SOURCE 4 ORGANISM_COMMON: SPOROTRICHUM THERMOPHILE; SOURCE 5 ORGANISM_TAXID: 573729; SOURCE 6 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 7 GENE: MYCTH_2305158; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / SOURCE 13 BCRC 31852 / DSM 1799); SOURCE 14 ORGANISM_COMMON: SPOROTRICHUM THERMOPHILE; SOURCE 15 ORGANISM_TAXID: 573729; SOURCE 16 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 17 GENE: MYCTH_2303763; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / SOURCE 23 BCRC 31852 / DSM 1799); SOURCE 24 ORGANISM_COMMON: SPOROTRICHUM THERMOPHILE; SOURCE 25 ORGANISM_TAXID: 573729; SOURCE 26 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 27 GENE: MYCTH_2298931; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSCRIPTION ELONGATION; PAF1; CTR9; CDC73; CRYSTAL STRUCTURE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,P.DENG,Y.ZHOU REVDAT 3 27-MAR-24 6AF0 1 REMARK REVDAT 2 17-OCT-18 6AF0 1 JRNL REVDAT 1 19-SEP-18 6AF0 0 JRNL AUTH P.DENG,Y.ZHOU,J.JIANG,H.LI,W.TIAN,Y.CAO,Y.QIN,J.KIM, JRNL AUTH 2 R.G.ROEDER,D.J.PATEL,Z.WANG JRNL TITL TRANSCRIPTIONAL ELONGATION FACTOR PAF1 CORE COMPLEX ADOPTS A JRNL TITL 2 SPIRALLY WRAPPED SOLENOIDAL TOPOLOGY. JRNL REF PROC. NATL. ACAD. SCI. V. 115 9998 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30224485 JRNL DOI 10.1073/PNAS.1812256115 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 118.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.461 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.434 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8541 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8238 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11546 ; 1.362 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18952 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1048 ; 6.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 417 ;37.309 ;24.029 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1510 ;20.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;19.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1250 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9706 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1953 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4210 ; 6.059 ; 9.048 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4209 ; 6.051 ; 9.048 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5252 ; 9.101 ;13.576 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5253 ; 9.100 ;13.577 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4331 ; 6.461 ; 9.539 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4332 ; 6.461 ; 9.540 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6295 ;10.006 ;14.099 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10592 ;14.210 ;73.747 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10593 ;14.210 ;73.751 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 118.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 1.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM PHOSPHATE DIBASIC, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.93350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 118.89450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.93350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 118.89450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 PRO A 191 REMARK 465 GLY A 192 REMARK 465 ALA A 193 REMARK 465 VAL A 194 REMARK 465 ILE A 534 REMARK 465 PRO A 535 REMARK 465 GLN A 536 REMARK 465 SER A 537 REMARK 465 GLU A 538 REMARK 465 TYR A 539 REMARK 465 PRO A 540 REMARK 465 PRO A 541 REMARK 465 ASP A 542 REMARK 465 ALA A 543 REMARK 465 GLU A 544 REMARK 465 ASP A 545 REMARK 465 GLU A 546 REMARK 465 ALA A 547 REMARK 465 ALA A 548 REMARK 465 ALA A 549 REMARK 465 ARG A 550 REMARK 465 ALA A 551 REMARK 465 ARG A 692 REMARK 465 PRO A 693 REMARK 465 ALA A 694 REMARK 465 ASN A 695 REMARK 465 ILE A 696 REMARK 465 ALA A 697 REMARK 465 GLU A 698 REMARK 465 ASP A 699 REMARK 465 ALA A 965 REMARK 465 LYS A 966 REMARK 465 ASN A 967 REMARK 465 SER P 0 REMARK 465 MET P 1 REMARK 465 SER P 2 REMARK 465 SER P 3 REMARK 465 SER P 4 REMARK 465 GLN P 5 REMARK 465 SER P 6 REMARK 465 ARG P 7 REMARK 465 SER P 8 REMARK 465 GLY P 9 REMARK 465 GLY P 10 REMARK 465 GLU P 11 REMARK 465 ARG P 12 REMARK 465 LYS P 120 REMARK 465 SER C 154 REMARK 465 ALA C 155 REMARK 465 ALA C 156 REMARK 465 SER C 157 REMARK 465 GLY C 158 REMARK 465 ARG C 159 REMARK 465 ALA C 160 REMARK 465 GLY C 161 REMARK 465 ARG C 162 REMARK 465 GLY C 163 REMARK 465 THR C 206 REMARK 465 ARG C 207 REMARK 465 LYS C 208 REMARK 465 PRO C 209 REMARK 465 GLY C 210 REMARK 465 ALA C 211 REMARK 465 ALA C 212 REMARK 465 PRO C 213 REMARK 465 SER C 214 REMARK 465 ALA C 215 REMARK 465 GLY C 216 REMARK 465 VAL C 217 REMARK 465 GLY C 218 REMARK 465 ALA C 219 REMARK 465 SER C 220 REMARK 465 ALA C 221 REMARK 465 THR C 222 REMARK 465 LEU C 223 REMARK 465 ALA C 224 REMARK 465 LEU C 225 REMARK 465 ASN C 226 REMARK 465 GLN C 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 895 NH2 ARG A 955 2.00 REMARK 500 O ALA A 84 NE2 GLN A 88 2.01 REMARK 500 OE2 GLU A 200 NH1 ARG A 203 2.09 REMARK 500 NH1 ARG A 935 OE2 GLU A 939 2.15 REMARK 500 O GLN C 171 OG SER C 174 2.15 REMARK 500 O ARG A 781 N ASP A 783 2.17 REMARK 500 O PRO A 139 O SER A 141 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 49 CD GLU A 49 OE1 0.149 REMARK 500 GLU A 49 CD GLU A 49 OE2 0.170 REMARK 500 TYR A 963 CG TYR A 963 CD2 0.104 REMARK 500 TYR A 963 CG TYR A 963 CD1 0.099 REMARK 500 TYR A 963 CE1 TYR A 963 CZ 0.093 REMARK 500 GLU A 964 CD GLU A 964 OE1 0.112 REMARK 500 GLU A 964 CD GLU A 964 OE2 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 832 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 33 -5.03 75.01 REMARK 500 VAL A 48 -60.08 68.21 REMARK 500 GLU A 49 -125.87 54.67 REMARK 500 PRO A 135 170.84 -56.64 REMARK 500 LYS A 189 -169.95 -71.49 REMARK 500 MET A 251 67.55 -150.01 REMARK 500 LEU A 270 -11.17 78.81 REMARK 500 THR A 310 -114.19 51.85 REMARK 500 GLU A 409 -4.67 85.91 REMARK 500 LYS A 426 -2.58 75.91 REMARK 500 LEU A 497 46.83 76.60 REMARK 500 THR A 595 -159.48 -84.68 REMARK 500 HIS A 636 79.29 -163.83 REMARK 500 LYS A 657 -84.57 -111.98 REMARK 500 ASN A 670 54.08 -148.73 REMARK 500 GLU A 737 -119.79 55.95 REMARK 500 GLU A 739 -123.27 64.35 REMARK 500 LYS A 782 68.84 -66.39 REMARK 500 ASN A 835 55.42 -90.24 REMARK 500 PRO C 191 157.08 -46.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET P 82 PRO P 83 -149.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 6AF0 A 30 967 UNP G2QC65 G2QC65_MYCTT 30 967 DBREF 6AF0 P 1 120 UNP G2QDK9 G2QDK9_MYCTT 1 120 DBREF 6AF0 C 155 227 UNP G2Q3X1 G2Q3X1_MYCTT 155 227 SEQADV 6AF0 GLY A 29 UNP G2QC65 EXPRESSION TAG SEQADV 6AF0 SER P 0 UNP G2QDK9 EXPRESSION TAG SEQADV 6AF0 SER C 154 UNP G2Q3X1 EXPRESSION TAG SEQRES 1 A 939 GLY SER LYS ARG PHE SER ASP ILE PRO GLN THR ILE ASP SEQRES 2 A 939 ILE PRO MET GLN ASP ASP VAL GLU VAL GLU ILE ASP LEU SEQRES 3 A 939 GLN VAL LEU PRO ASP ASP PRO THR GLU LEU CYS SER VAL SEQRES 4 A 939 PHE GLU ASN GLU GLN SER PRO ARG ILE TYR TRP MET THR SEQRES 5 A 939 VAL ALA LEU ALA TYR ALA LYS GLN ASN LYS ILE ASP PHE SEQRES 6 A 939 ALA ILE GLU MET LEU LEU ARG GLY ALA ASN VAL LEU GLN SEQRES 7 A 939 GLY ASN GLN ARG GLU LYS LEU GLY ILE ILE THR CYS ILE SEQRES 8 A 939 CYS TRP LEU TYR LEU TRP LYS SER ARG GLU ALA PRO ARG SEQRES 9 A 939 VAL ALA PRO ASP GLY VAL PRO ALA SER GLU ALA LYS THR SEQRES 10 A 939 LYS GLU TYR TYR LEU GLN LEU ALA THR GLN SER LEU ASN SEQRES 11 A 939 ASP ALA SER ARG ILE ASN PRO ALA PHE PRO PRO LEU PHE SEQRES 12 A 939 LEU ALA ARG GLY VAL LEU ILE LEU LEU LYS ALA SER LEU SEQRES 13 A 939 GLN PRO SER SER LYS ALA PRO GLY ALA VAL ASP SER ASN SEQRES 14 A 939 LYS ALA GLU GLN LEU ARG ASN ALA LEU LYS SER PHE GLU SEQRES 15 A 939 GLU ALA ILE ARG VAL SER GLN GLY ARG ASN MET LEU ALA SEQRES 16 A 939 VAL MET GLY LYS ALA ARG ALA LEU PHE SER LEU GLY ARG SEQRES 17 A 939 TYR PRO GLU SER LEU ALA ALA TYR GLN ASP VAL VAL ALA SEQRES 18 A 939 LYS MET PRO ASP MET VAL ASP PRO ASP PRO ARG ILE GLY SEQRES 19 A 939 ILE GLY CYS CYS PHE TRP GLN LEU GLY PHE LYS ASP ASP SEQRES 20 A 939 ALA LYS ILE ALA TRP GLU ARG CYS LEU GLU ILE ASN PRO SEQRES 21 A 939 ASP SER LYS HIS ALA ASN ILE LEU LEU GLY LEU TYR TYR SEQRES 22 A 939 LEU ASP ALA SER GLY HIS VAL PRO THR ASN SER PRO GLU SEQRES 23 A 939 PHE ILE ARG LEU TYR LYS LYS ALA MET THR GLU TYR THR SEQRES 24 A 939 GLN LYS SER PHE LYS LEU ASP LYS ASN LEU PRO LEU THR SEQRES 25 A 939 CYS ALA THR PHE ALA GLY TYR PHE LEU SER ARG LYS GLN SEQRES 26 A 939 PHE GLY ASN VAL ASP ALA LEU ALA HIS LYS ALA ILE GLN SEQRES 27 A 939 TYR THR ASP VAL ASN ALA ILE ALA SER ASP GLY TRP TYR SEQRES 28 A 939 LEU LEU ALA ARG LYS GLU HIS TYR ASP GLY ASN LEU GLU SEQRES 29 A 939 ARG ALA SER ASP TYR TYR ARG ARG ALA ASP ASP ALA ARG SEQRES 30 A 939 GLY GLY ALA GLU ARG GLY TYR LEU PRO ALA LYS PHE GLY SEQRES 31 A 939 ALA ALA GLN LEU SER VAL LEU LYS ASN ASP LEU GLY GLU SEQRES 32 A 939 ALA LYS LEU ARG LEU GLU LYS MET ILE GLN HIS SER LYS SEQRES 33 A 939 ASN TYR GLU ALA MET ILE LEU LEU GLY THR LEU TYR ALA SEQRES 34 A 939 GLU GLU VAL PHE ALA ASN GLN SER ALA ALA VAL LYS GLU SEQRES 35 A 939 ASP LYS SER ALA GLU ALA LYS LYS ALA ILE SER LEU LEU SEQRES 36 A 939 GLU GLY VAL ARG SER ALA TRP LYS ASP PRO LYS ARG ASN SEQRES 37 A 939 LEU SER PRO ASP ALA ALA VAL LEU LEU ASN LEU ALA ARG SEQRES 38 A 939 LEU TYR GLU SER GLU SER PRO ASP LYS ALA LEU GLN CYS SEQRES 39 A 939 LEU GLN GLN VAL GLU GLN LEU GLU ILE ASP GLN ILE PRO SEQRES 40 A 939 GLN SER GLU TYR PRO PRO ASP ALA GLU ASP GLU ALA ALA SEQRES 41 A 939 ALA ARG ALA ALA ILE ARG LYS LEU LEU PRO PRO GLN LEU SEQRES 42 A 939 LEU ASN ASN ILE GLY CYS PHE TYR SER GLN GLU GLY LYS SEQRES 43 A 939 HIS ARG LEU ALA THR GLU PHE PHE GLN ALA ALA LEU ASP SEQRES 44 A 939 SER CYS ALA ARG ILE SER GLN THR GLU ASN ASP LEU ASP SEQRES 45 A 939 ILE ASP ALA LEU LEU THR THR ILE PRO PHE ASN LEU GLY SEQRES 46 A 939 ARG SER TYR GLU TYR GLU GLY ASP ILE ASP LYS ALA ILE SEQRES 47 A 939 GLU THR TYR GLU GLN LEU LEU SER ARG HIS SER ASP TYR SEQRES 48 A 939 THR ASP ALA ARG THR ARG LEU ALA TYR ILE LYS LEU ARG SEQRES 49 A 939 ARG ASN PRO ASN LYS GLU GLY PRO ASP ALA VAL ALA LYS SEQRES 50 A 939 LEU TYR GLN GLU ASN PRO SER ASP LEU GLU VAL ARG GLY SEQRES 51 A 939 LEU TYR GLY TRP PHE LEU SER LYS VAL ASN SER LYS LYS SEQRES 52 A 939 ARG PRO ALA ASN ILE ALA GLU ASP PRO GLU GLN ARG HIS SEQRES 53 A 939 TYR LYS HIS THR LEU GLN SER TYR ASP LYS HIS ASP ARG SEQRES 54 A 939 TYR ALA LEU VAL GLY MET GLY ASN LEU HIS LEU MET ALA SEQRES 55 A 939 ALA ARG GLU MET ARG ARG GLU THR GLU GLN ASP ARG GLN SEQRES 56 A 939 LYS ARG SER ALA ALA TYR ASN ARG ALA VAL GLU PHE PHE SEQRES 57 A 939 ASP LYS ALA LEU GLN LEU ASP PRO LYS ASN ALA TYR ALA SEQRES 58 A 939 ALA GLN GLY ILE ALA ILE ALA LEU VAL GLU ASP ARG LYS SEQRES 59 A 939 ASP TYR LYS ASN ALA LEU GLN ILE PHE ILE LYS VAL ARG SEQRES 60 A 939 GLU THR ILE GLN ASP ALA HIS VAL TYR VAL ASN MET GLY SEQRES 61 A 939 HIS ILE TYR ALA GLU LEU ARG GLN PHE SER LYS ALA ILE SEQRES 62 A 939 GLU SER TYR GLU ILE ALA LEU SER LYS GLU GLY LYS ALA SEQRES 63 A 939 ASN ASP ALA GLY ILE ILE SER CYS LEU GLY ARG THR TRP SEQRES 64 A 939 LEU ASN LYS GLY ARG ALA GLU ARG ASN LEU ASP ALA TYR SEQRES 65 A 939 LYS MET ALA LEU ASP GLN ALA LYS LYS ALA VAL ALA VAL SEQRES 66 A 939 ALA PRO ASP GLN LEU HIS PHE LYS PHE ASN VAL ALA PHE SEQRES 67 A 939 VAL GLN ILE GLN ILE ALA LEU VAL LEU HIS SER MET ARG SEQRES 68 A 939 GLU SER GLU ARG ASN SER PHE GLN LEU GLU GLU ALA ALA SEQRES 69 A 939 GLU GLY LEU GLU GLU ALA ILE LYS ILE LEU ASP GLU ILE SEQRES 70 A 939 ALA ALA SER PRO SER PRO PRO TYR PRO ARG HIS ASP ILE SEQRES 71 A 939 GLU GLN ARG ALA ASN MET ALA ARG ASN THR GLN ARG LYS SEQRES 72 A 939 GLN LEU GLU ARG ALA LEU ALA SER GLN ARG GLU TYR GLU SEQRES 73 A 939 ALA LYS ASN SEQRES 1 P 121 SER MET SER SER SER GLN SER ARG SER GLY GLY GLU ARG SEQRES 2 P 121 MET ILE HIS GLN ASP TYR ILE ALA ARG ILE ARG TYR SER SEQRES 3 P 121 ASN ALA LEU PRO PRO PRO PRO ILE PRO PRO LYS LEU LEU SEQRES 4 P 121 ASP ILE PRO ASN THR GLY LEU ALA SER GLY GLN TYR THR SEQRES 5 P 121 ALA PRO GLY PHE ALA SER ARG LEU ALA ARG GLU GLN PRO SEQRES 6 P 121 LEU ASN ILE GLU ALA ASP ALA GLU LEU GLY MET PRO LEU SEQRES 7 P 121 ASP LEU VAL GLY MET PRO GLY VAL PHE ASP GLY ASP GLU SEQRES 8 P 121 SER SER ILE GLN ALA PRO ALA GLN PRO PRO PRO VAL HIS SEQRES 9 P 121 PRO HIS ASP ARG PRO LEU LEU ARG PRO LEU SER THR LEU SEQRES 10 P 121 GLY LYS PRO LYS SEQRES 1 C 74 SER ALA ALA SER GLY ARG ALA GLY ARG GLY THR LEU ASP SEQRES 2 C 74 PRO ARG LEU ALA GLN ILE TYR SER GLY GLU ARG ARG MET SEQRES 3 C 74 GLY ASP ARG ASN THR ALA LEU ARG GLY ILE LYS PRO THR SEQRES 4 C 74 ASP PHE SER HIS VAL ARG LYS LEU ALA ALA PRO PHE VAL SEQRES 5 C 74 THR ARG LYS PRO GLY ALA ALA PRO SER ALA GLY VAL GLY SEQRES 6 C 74 ALA SER ALA THR LEU ALA LEU ASN GLN HELIX 1 AA1 PRO A 61 GLU A 71 1 11 HELIX 2 AA2 PRO A 74 GLN A 88 1 15 HELIX 3 AA3 LYS A 90 LEU A 105 1 16 HELIX 4 AA4 GLN A 109 ALA A 130 1 22 HELIX 5 AA5 THR A 145 ASN A 164 1 20 HELIX 6 AA6 PHE A 167 LEU A 184 1 18 HELIX 7 AA7 SER A 196 GLN A 217 1 22 HELIX 8 AA8 ASN A 220 LEU A 234 1 15 HELIX 9 AA9 ARG A 236 MET A 251 1 16 HELIX 10 AB1 PRO A 259 GLN A 269 1 11 HELIX 11 AB2 PHE A 272 ASN A 287 1 16 HELIX 12 AB3 SER A 290 VAL A 308 1 19 HELIX 13 AB4 SER A 312 GLU A 325 1 14 HELIX 14 AB5 GLU A 325 ASP A 334 1 10 HELIX 15 AB6 LEU A 337 ARG A 351 1 15 HELIX 16 AB7 GLN A 353 TYR A 367 1 15 HELIX 17 AB8 VAL A 370 GLY A 389 1 20 HELIX 18 AB9 ASN A 390 ARG A 405 1 16 HELIX 19 AC1 TYR A 412 LEU A 425 1 14 HELIX 20 AC2 ASP A 428 SER A 443 1 16 HELIX 21 AC3 ASN A 445 GLN A 464 1 20 HELIX 22 AC4 LYS A 472 ASP A 492 1 21 HELIX 23 AC5 ASP A 500 SER A 513 1 14 HELIX 24 AC6 SER A 515 GLN A 533 1 19 HELIX 25 AC7 PRO A 558 GLU A 572 1 15 HELIX 26 AC8 LYS A 574 THR A 595 1 22 HELIX 27 AC9 ASP A 600 GLY A 620 1 21 HELIX 28 AD1 ASP A 621 HIS A 636 1 16 HELIX 29 AD2 TYR A 639 ASN A 654 1 16 HELIX 30 AD3 LYS A 657 ASN A 670 1 14 HELIX 31 AD4 ASP A 673 LYS A 691 1 19 HELIX 32 AD5 GLU A 701 ASP A 713 1 13 HELIX 33 AD6 ASP A 716 GLU A 733 1 18 HELIX 34 AD7 GLU A 739 ASP A 763 1 25 HELIX 35 AD8 ASN A 766 ARG A 781 1 16 HELIX 36 AD9 ASP A 783 GLN A 799 1 17 HELIX 37 AE1 ASP A 800 LEU A 814 1 15 HELIX 38 AE2 GLN A 816 LYS A 830 1 15 HELIX 39 AE3 ASP A 836 ARG A 855 1 20 HELIX 40 AE4 ASN A 856 ALA A 874 1 19 HELIX 41 AE5 GLN A 877 MET A 898 1 22 HELIX 42 AE6 ARG A 899 ARG A 903 5 5 HELIX 43 AE7 ASN A 904 SER A 928 1 25 HELIX 44 AE8 PRO A 934 TYR A 963 1 30 HELIX 45 AE9 SER P 47 ALA P 52 5 6 HELIX 46 AF1 PRO P 53 GLU P 62 1 10 HELIX 47 AF2 GLU P 90 GLN P 94 5 5 HELIX 48 AF3 ASP P 106 ARG P 111 1 6 HELIX 49 AF4 PRO P 112 GLY P 117 5 6 HELIX 50 AF5 ASP C 166 GLY C 175 1 10 HELIX 51 AF6 ASP C 181 LEU C 186 1 6 HELIX 52 AF7 SER C 195 ALA C 202 1 8 SHEET 1 AA1 2 THR A 39 ILE A 42 0 SHEET 2 AA1 2 VAL A 50 ASP A 53 -1 O VAL A 50 N ILE A 42 SHEET 1 AA2 2 LEU P 37 LEU P 38 0 SHEET 2 AA2 2 GLU C 176 ARG C 177 -1 O ARG C 177 N LEU P 37 CISPEP 1 VAL A 138 PRO A 139 0 -16.80 CISPEP 2 ASP A 256 PRO A 257 0 5.45 CRYST1 99.867 237.789 62.737 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015940 0.00000