PDB Short entry for 6ARQ HEADER IMMUNE SYSTEM 23-AUG-17 6ARQ TITLE CRYSTAL STRUCTURE OF CD96 (D1) BOUND TO CD155/NECL-5 (D1-3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE PROTEIN TACTILE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL SURFACE ANTIGEN CD96,T CELL-ACTIVATED INCREASED LATE COMPND 5 EXPRESSION PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: POLIOVIRUS RECEPTOR; COMPND 10 CHAIN: D; COMPND 11 SYNONYM: NECTIN-LIKE PROTEIN 5,NECL-5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD96; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PVR, PVS; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS NATURAL KILLER CELL RECEPTOR, ADHESION MOLECULE, IMMUNOGLOBULIN FOLD, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.A.DEUSS,G.M.WATSON,J.ROSSJOHN,R.BERRY REVDAT 7 04-OCT-23 6ARQ 1 HETSYN LINK REVDAT 6 29-JUL-20 6ARQ 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 6ARQ 1 REMARK REVDAT 4 13-FEB-19 6ARQ 1 JRNL REVDAT 3 26-DEC-18 6ARQ 1 JRNL REVDAT 2 28-NOV-18 6ARQ 1 JRNL REVDAT 1 21-NOV-18 6ARQ 0 JRNL AUTH F.A.DEUSS,G.M.WATSON,Z.FU,J.ROSSJOHN,R.BERRY JRNL TITL STRUCTURAL BASIS FOR CD96 IMMUNE RECEPTOR RECOGNITION OF JRNL TITL 2 NECTIN-LIKE PROTEIN-5, CD155. JRNL REF STRUCTURE V. 27 219 2019 JRNL REFN ISSN 1878-4186 JRNL PMID 30528596 JRNL DOI 10.1016/J.STR.2018.10.023 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 12337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2758 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2550 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2632 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.63880 REMARK 3 B22 (A**2) : 6.73260 REMARK 3 B33 (A**2) : -3.09380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.470 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.372 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.850 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3261 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4493 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1430 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 477 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3261 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 472 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3217 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -25.4708 -4.3194 74.7154 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0193 REMARK 3 T33: 0.0327 T12: -0.0038 REMARK 3 T13: 0.0695 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.5313 L22: 3.3906 REMARK 3 L33: 2.4199 L12: 0.6384 REMARK 3 L13: -0.7677 L23: -0.6855 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.1829 S13: -0.1899 REMARK 3 S21: -0.0185 S22: 0.0591 S23: 0.0330 REMARK 3 S31: -0.0974 S32: -0.0840 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.7034 -20.5184 19.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.2644 T22: 0.0519 REMARK 3 T33: 0.0421 T12: 0.0243 REMARK 3 T13: -0.0958 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.6106 REMARK 3 L33: 2.8273 L12: 0.1626 REMARK 3 L13: 0.0824 L23: 1.4167 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: 0.0339 S13: 0.0407 REMARK 3 S21: -0.1153 S22: 0.0038 S23: 0.1448 REMARK 3 S31: 0.0262 S32: -0.0796 S33: -0.0694 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ARQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 74.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FQP, REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (V/V) JEFFAMINE ED-2001 0.1M HEPES REMARK 280 PH7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.56900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.46400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.40950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.46400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.56900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.40950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 TRP A 23 REMARK 465 GLU A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 THR A 94 REMARK 465 PRO A 95 REMARK 465 THR A 138 REMARK 465 HIS A 139 REMARK 465 GLY A 140 REMARK 465 THR A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 LEU D 26 REMARK 465 GLU D 27 REMARK 465 GLU D 88 REMARK 465 SER D 89 REMARK 465 LYS D 90 REMARK 465 GLU D 331 REMARK 465 GLY D 332 REMARK 465 PRO D 333 REMARK 465 PRO D 334 REMARK 465 THR D 335 REMARK 465 SER D 336 REMARK 465 HIS D 337 REMARK 465 HIS D 338 REMARK 465 HIS D 339 REMARK 465 HIS D 340 REMARK 465 HIS D 341 REMARK 465 HIS D 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 27 CG1 CG2 REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU D 57 CG CD OE1 OE2 REMARK 470 SER D 72 OG REMARK 470 ARG D 91 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 93 CG CD OE1 OE2 REMARK 470 ARG D 98 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 116 CG CD OE1 OE2 REMARK 470 LYS D 144 CG CD CE NZ REMARK 470 GLU D 159 CG CD OE1 OE2 REMARK 470 HIS D 180 CG ND1 CD2 CE1 NE2 REMARK 470 MET D 186 CG SD CE REMARK 470 GLN D 213 CG CD OE1 NE2 REMARK 470 VAL D 214 CG1 CG2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 GLU D 226 CG CD OE1 OE2 REMARK 470 GLU D 229 CG CD OE1 OE2 REMARK 470 LYS D 230 CG CD CE NZ REMARK 470 ASN D 253 CG OD1 ND2 REMARK 470 ASN D 254 CG OD1 ND2 REMARK 470 ARG D 269 CG CD NE CZ NH1 NH2 REMARK 470 MET D 283 CG SD CE REMARK 470 GLN D 328 CG CD OE1 NE2 REMARK 470 LYS D 330 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 81.88 -162.04 REMARK 500 THR A 62 -113.92 -135.89 REMARK 500 TYR A 81 -146.83 -98.76 REMARK 500 CYS D 49 109.47 -162.33 REMARK 500 SER D 72 -67.80 62.67 REMARK 500 ARG D 104 -42.47 -139.71 REMARK 500 GLN D 155 -156.44 -101.21 REMARK 500 SER D 168 77.60 -117.33 REMARK 500 GLN D 213 37.42 -87.26 REMARK 500 ASN D 253 -28.79 64.57 REMARK 500 GLU D 261 92.04 -63.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ARQ A 21 139 UNP P40200 TACT_HUMAN 21 139 DBREF 6ARQ D 28 334 UNP P15151 PVR_HUMAN 28 334 SEQADV 6ARQ THR A 20 UNP P40200 EXPRESSION TAG SEQADV 6ARQ SER A 110 UNP P40200 CYS 110 ENGINEERED MUTATION SEQADV 6ARQ GLY A 140 UNP P40200 EXPRESSION TAG SEQADV 6ARQ THR A 141 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 142 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 143 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 144 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 145 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 146 UNP P40200 EXPRESSION TAG SEQADV 6ARQ HIS A 147 UNP P40200 EXPRESSION TAG SEQADV 6ARQ LEU D 26 UNP P15151 EXPRESSION TAG SEQADV 6ARQ GLU D 27 UNP P15151 EXPRESSION TAG SEQADV 6ARQ THR D 335 UNP P15151 EXPRESSION TAG SEQADV 6ARQ SER D 336 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 337 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 338 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 339 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 340 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 341 UNP P15151 EXPRESSION TAG SEQADV 6ARQ HIS D 342 UNP P15151 EXPRESSION TAG SEQRES 1 A 128 THR GLY VAL TRP GLU LYS THR VAL ASN THR GLU GLU ASN SEQRES 2 A 128 VAL TYR ALA THR LEU GLY SER ASP VAL ASN LEU THR CYS SEQRES 3 A 128 GLN THR GLN THR VAL GLY PHE PHE VAL GLN MET GLN TRP SEQRES 4 A 128 SER LYS VAL THR ASN LYS ILE ASP LEU ILE ALA VAL TYR SEQRES 5 A 128 HIS PRO GLN TYR GLY PHE TYR CYS ALA TYR GLY ARG PRO SEQRES 6 A 128 CYS GLU SER LEU VAL THR PHE THR GLU THR PRO GLU ASN SEQRES 7 A 128 GLY SER LYS TRP THR LEU HIS LEU ARG ASN MET SER SER SEQRES 8 A 128 SER VAL SER GLY ARG TYR GLU CYS MET LEU VAL LEU TYR SEQRES 9 A 128 PRO GLU GLY ILE GLN THR LYS ILE TYR ASN LEU LEU ILE SEQRES 10 A 128 GLN THR HIS GLY THR HIS HIS HIS HIS HIS HIS SEQRES 1 D 317 LEU GLU ASP VAL VAL VAL GLN ALA PRO THR GLN VAL PRO SEQRES 2 D 317 GLY PHE LEU GLY ASP SER VAL THR LEU PRO CYS TYR LEU SEQRES 3 D 317 GLN VAL PRO ASN MET GLU VAL THR HIS VAL SER GLN LEU SEQRES 4 D 317 THR TRP ALA ARG HIS GLY GLU SER GLY SER MET ALA VAL SEQRES 5 D 317 PHE HIS GLN THR GLN GLY PRO SER TYR SER GLU SER LYS SEQRES 6 D 317 ARG LEU GLU PHE VAL ALA ALA ARG LEU GLY ALA GLU LEU SEQRES 7 D 317 ARG ASN ALA SER LEU ARG MET PHE GLY LEU ARG VAL GLU SEQRES 8 D 317 ASP GLU GLY ASN TYR THR CYS LEU PHE VAL THR PHE PRO SEQRES 9 D 317 GLN GLY SER ARG SER VAL ASP ILE TRP LEU ARG VAL LEU SEQRES 10 D 317 ALA LYS PRO GLN ASN THR ALA GLU VAL GLN LYS VAL GLN SEQRES 11 D 317 LEU THR GLY GLU PRO VAL PRO MET ALA ARG CYS VAL SER SEQRES 12 D 317 THR GLY GLY ARG PRO PRO ALA GLN ILE THR TRP HIS SER SEQRES 13 D 317 ASP LEU GLY GLY MET PRO ASN THR SER GLN VAL PRO GLY SEQRES 14 D 317 PHE LEU SER GLY THR VAL THR VAL THR SER LEU TRP ILE SEQRES 15 D 317 LEU VAL PRO SER SER GLN VAL ASP GLY LYS ASN VAL THR SEQRES 16 D 317 CYS LYS VAL GLU HIS GLU SER PHE GLU LYS PRO GLN LEU SEQRES 17 D 317 LEU THR VAL ASN LEU THR VAL TYR TYR PRO PRO GLU VAL SEQRES 18 D 317 SER ILE SER GLY TYR ASP ASN ASN TRP TYR LEU GLY GLN SEQRES 19 D 317 ASN GLU ALA THR LEU THR CYS ASP ALA ARG SER ASN PRO SEQRES 20 D 317 GLU PRO THR GLY TYR ASN TRP SER THR THR MET GLY PRO SEQRES 21 D 317 LEU PRO PRO PHE ALA VAL ALA GLN GLY ALA GLN LEU LEU SEQRES 22 D 317 ILE ARG PRO VAL ASP LYS PRO ILE ASN THR THR LEU ILE SEQRES 23 D 317 CYS ASN VAL THR ASN ALA LEU GLY ALA ARG GLN ALA GLU SEQRES 24 D 317 LEU THR VAL GLN VAL LYS GLU GLY PRO PRO THR SER HIS SEQRES 25 D 317 HIS HIS HIS HIS HIS HET NAG B 1 14 HET FUC B 2 10 HET NAG C 1 14 HET FUC C 2 10 HET NAG E 1 14 HET FUC E 2 10 HET NAG A 201 14 HET NAG D 407 14 HET NAG D 408 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 FUC 3(C6 H12 O5) FORMUL 9 HOH *8(H2 O) HELIX 1 AA1 ARG D 114 GLU D 118 5 5 HELIX 2 AA2 SER D 211 ASP D 215 5 5 SHEET 1 AA1 6 ASN A 28 ALA A 35 0 SHEET 2 AA1 6 GLY A 126 ILE A 136 1 O ASN A 133 N GLU A 31 SHEET 3 AA1 6 GLY A 114 TYR A 123 -1 N TYR A 116 O TYR A 132 SHEET 4 AA1 6 PHE A 52 VAL A 61 -1 N GLN A 55 O VAL A 121 SHEET 5 AA1 6 ILE A 65 HIS A 72 -1 O TYR A 71 N MET A 56 SHEET 6 AA1 6 GLY A 76 CYS A 79 -1 O GLY A 76 N HIS A 72 SHEET 1 AA2 3 VAL A 41 GLN A 48 0 SHEET 2 AA2 3 GLY A 98 LEU A 105 -1 O TRP A 101 N CYS A 45 SHEET 3 AA2 3 VAL A 89 THR A 92 -1 N THR A 90 O THR A 102 SHEET 1 AA3 2 VAL D 30 GLN D 32 0 SHEET 2 AA3 2 TYR D 50 GLN D 52 -1 O GLN D 52 N VAL D 30 SHEET 1 AA4 6 GLN D 36 PHE D 40 0 SHEET 2 AA4 6 GLY D 131 LEU D 142 1 O ARG D 140 N GLY D 39 SHEET 3 AA4 6 GLY D 119 PHE D 128 -1 N GLY D 119 O LEU D 139 SHEET 4 AA4 6 HIS D 60 ARG D 68 -1 N ALA D 67 O THR D 122 SHEET 5 AA4 6 ALA D 76 HIS D 79 -1 O ALA D 76 N TRP D 66 SHEET 6 AA4 6 GLY D 83 TYR D 86 -1 O SER D 85 N VAL D 77 SHEET 1 AA5 3 VAL D 45 LEU D 47 0 SHEET 2 AA5 3 LEU D 108 MET D 110 -1 O LEU D 108 N LEU D 47 SHEET 3 AA5 3 LEU D 92 PHE D 94 -1 N GLU D 93 O ARG D 109 SHEET 1 AA6 4 GLN D 146 VAL D 151 0 SHEET 2 AA6 4 VAL D 161 GLY D 171 -1 O THR D 169 N GLN D 146 SHEET 3 AA6 4 VAL D 200 LEU D 208 -1 O SER D 204 N CYS D 166 SHEET 4 AA6 4 PRO D 187 PRO D 193 -1 N ASN D 188 O LEU D 205 SHEET 1 AA7 3 GLN D 176 HIS D 180 0 SHEET 2 AA7 3 ASN D 218 GLU D 224 -1 O LYS D 222 N THR D 178 SHEET 3 AA7 3 GLN D 232 ASN D 237 -1 O LEU D 234 N CYS D 221 SHEET 1 AA8 4 SER D 247 SER D 249 0 SHEET 2 AA8 4 ALA D 262 ASP D 267 -1 O THR D 265 N SER D 249 SHEET 3 AA8 4 GLN D 296 ILE D 299 -1 O ILE D 299 N ALA D 262 SHEET 4 AA8 4 ALA D 290 GLN D 293 -1 N GLN D 293 O GLN D 296 SHEET 1 AA9 3 GLY D 276 THR D 281 0 SHEET 2 AA9 3 ILE D 306 THR D 315 -1 O ASN D 313 N ASN D 278 SHEET 3 AA9 3 ALA D 320 VAL D 329 -1 O VAL D 329 N ILE D 306 SSBOND 1 CYS A 45 CYS A 118 1555 1555 2.04 SSBOND 2 CYS A 79 CYS A 85 1555 1555 2.03 SSBOND 3 CYS D 49 CYS D 123 1555 1555 2.03 SSBOND 4 CYS D 166 CYS D 221 1555 1555 2.04 SSBOND 5 CYS D 266 CYS D 312 1555 1555 2.04 LINK ND2 ASN A 42 C1 NAG A 201 1555 1555 1.44 LINK ND2 ASN D 105 C1 NAG D 407 1555 1555 1.43 LINK ND2 ASN D 120 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN D 188 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN D 237 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN D 313 C1 NAG D 408 1555 1555 1.43 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.40 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.40 LINK O6 NAG E 1 C1 FUC E 2 1555 1555 1.40 CISPEP 1 TYR A 123 PRO A 124 0 3.74 CISPEP 2 PHE D 128 PRO D 129 0 4.59 CISPEP 3 ARG D 172 PRO D 173 0 -0.79 CISPEP 4 ASN D 271 PRO D 272 0 2.68 CRYST1 33.138 70.819 224.928 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004446 0.00000