PDB Short entry for 6B0O HEADER TRANSCRIPTION/DNA 14-SEP-17 6B0O TITLE ZINC FINGER DOMAIN OF WT1(-KTS FORM) WITH 12+1MER OLIGONUCLEOTIDE WITH TITLE 2 3' TRIPLET TGT COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR PROTEIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 304-420; COMPND 5 SYNONYM: WT33; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*T)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'); COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX WILMS TUMOR SUPPRESSOR PROTEIN ZINC-FINGERS, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 5 04-OCT-23 6B0O 1 REMARK REVDAT 4 01-JAN-20 6B0O 1 REMARK REVDAT 3 16-MAY-18 6B0O 1 JRNL REVDAT 2 17-JAN-18 6B0O 1 JRNL REVDAT 1 03-JAN-18 6B0O 0 JRNL AUTH D.WANG,J.R.HORTON,Y.ZHENG,R.M.BLUMENTHAL,X.ZHANG,X.CHENG JRNL TITL ROLE FOR FIRST ZINC FINGER OF WT1 IN DNA SEQUENCE JRNL TITL 2 SPECIFICITY: DENYS-DRASH SYNDROME-ASSOCIATED WT1 MUTANT IN JRNL TITL 3 ZF1 ENHANCES AFFINITY FOR A SUBSET OF WT1 BINDING SITES. JRNL REF NUCLEIC ACIDS RES. V. 46 3864 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29294058 JRNL DOI 10.1093/NAR/GKX1274 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 118578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.320 REMARK 3 FREE R VALUE TEST SET COUNT : 3935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5933 - 4.7057 0.99 4196 156 0.1485 0.1584 REMARK 3 2 4.7057 - 3.7374 0.98 4217 146 0.1489 0.1593 REMARK 3 3 3.7374 - 3.2657 0.97 4075 142 0.1690 0.1920 REMARK 3 4 3.2657 - 2.9674 0.98 4212 149 0.1973 0.1982 REMARK 3 5 2.9674 - 2.7549 0.98 4145 138 0.2079 0.2462 REMARK 3 6 2.7549 - 2.5926 0.97 4206 143 0.2089 0.1975 REMARK 3 7 2.5926 - 2.4628 0.97 4062 151 0.2034 0.2432 REMARK 3 8 2.4628 - 2.3556 0.97 4161 132 0.2072 0.2067 REMARK 3 9 2.3556 - 2.2650 0.97 4138 155 0.2053 0.2313 REMARK 3 10 2.2650 - 2.1868 0.96 4135 127 0.2085 0.2043 REMARK 3 11 2.1868 - 2.1185 0.97 4125 152 0.2055 0.2358 REMARK 3 12 2.1185 - 2.0579 0.95 4078 140 0.2121 0.2292 REMARK 3 13 2.0579 - 2.0038 0.97 4129 135 0.2188 0.2036 REMARK 3 14 2.0038 - 1.9549 0.96 4057 149 0.2187 0.2028 REMARK 3 15 1.9549 - 1.9105 0.95 4149 119 0.2255 0.2486 REMARK 3 16 1.9105 - 1.8698 0.95 3991 141 0.2245 0.2107 REMARK 3 17 1.8698 - 1.8324 0.96 4109 134 0.2170 0.2241 REMARK 3 18 1.8324 - 1.7978 0.96 4068 148 0.2144 0.2511 REMARK 3 19 1.7978 - 1.7657 0.96 4038 128 0.2260 0.2497 REMARK 3 20 1.7657 - 1.7358 0.95 4180 129 0.2283 0.2275 REMARK 3 21 1.7358 - 1.7078 0.94 3961 149 0.2275 0.2281 REMARK 3 22 1.7078 - 1.6815 0.94 4010 149 0.2353 0.2798 REMARK 3 23 1.6815 - 1.6568 0.95 4063 137 0.2439 0.2737 REMARK 3 24 1.6568 - 1.6335 0.95 4012 140 0.2471 0.3015 REMARK 3 25 1.6335 - 1.6114 0.94 4088 125 0.2580 0.2919 REMARK 3 26 1.6114 - 1.5905 0.95 3969 140 0.2888 0.3364 REMARK 3 27 1.5905 - 1.5706 0.94 4076 152 0.2906 0.2832 REMARK 3 28 1.5706 - 1.5517 0.93 3993 129 0.3063 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3220 REMARK 3 ANGLE : 0.528 4553 REMARK 3 CHIRALITY : 0.033 471 REMARK 3 PLANARITY : 0.003 407 REMARK 3 DIHEDRAL : 18.295 1765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5KL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350 0.2M AMMONIUM ACETATE REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS D 319 REMARK 465 MET D 320 REMARK 465 ARG D 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 319 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 320 CG SD CE REMARK 470 MET A 324 CG SD CE REMARK 470 ASN A 331 CG OD1 ND2 REMARK 470 ARG A 414 CG CD NE CZ NH1 NH2 REMARK 470 SER A 417 OG REMARK 470 GLN A 419 CG CD OE1 NE2 REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 350 CG CD OE1 OE2 REMARK 470 GLU D 361 CG CD OE1 OE2 REMARK 470 TRP D 415 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 415 CZ3 CH2 REMARK 470 SER D 417 OG REMARK 470 GLN D 419 CG CD OE1 NE2 REMARK 470 LYS D 420 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 325 SG REMARK 620 2 CYS A 330 SG 117.8 REMARK 620 3 HIS A 343 NE2 111.5 100.5 REMARK 620 4 HIS A 347 NE2 106.4 113.2 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 CYS A 360 SG 116.0 REMARK 620 3 HIS A 373 NE2 109.1 106.4 REMARK 620 4 HIS A 377 NE2 103.6 114.4 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 385 SG REMARK 620 2 CYS A 388 SG 117.5 REMARK 620 3 HIS A 401 NE2 111.8 103.5 REMARK 620 4 HIS A 405 NE2 107.1 113.4 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 413 SG REMARK 620 2 CYS A 418 SG 124.8 REMARK 620 3 HIS A 431 NE2 103.2 85.2 REMARK 620 4 HIS A 435 NE2 102.0 126.6 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 325 SG REMARK 620 2 CYS D 330 SG 116.7 REMARK 620 3 HIS D 343 NE2 109.6 101.8 REMARK 620 4 HIS D 347 NE2 108.9 109.0 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 355 SG REMARK 620 2 CYS D 360 SG 114.6 REMARK 620 3 HIS D 373 NE2 114.1 107.5 REMARK 620 4 HIS D 377 NE2 106.1 114.0 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 385 SG REMARK 620 2 CYS D 388 SG 118.2 REMARK 620 3 HIS D 401 NE2 107.3 104.8 REMARK 620 4 HIS D 405 NE2 109.6 110.5 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 413 SG REMARK 620 2 CYS D 418 SG 118.5 REMARK 620 3 HIS D 431 NE2 102.9 112.9 REMARK 620 4 HIS D 435 NE2 97.2 131.7 86.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B0P RELATED DB: PDB REMARK 900 RELATED ID: 6B0Q RELATED DB: PDB REMARK 900 RELATED ID: 6B0R RELATED DB: PDB DBREF 6B0O A 321 437 UNP P19544 WT1_HUMAN 304 420 DBREF 6B0O B 1 13 PDB 6B0O 6B0O 1 13 DBREF 6B0O C 1 13 PDB 6B0O 6B0O 1 13 DBREF 6B0O D 321 437 UNP P19544 WT1_HUMAN 304 420 DBREF 6B0O E 1 13 PDB 6B0O 6B0O 1 13 DBREF 6B0O F 1 13 PDB 6B0O 6B0O 1 13 SEQADV 6B0O HIS A 319 UNP P19544 EXPRESSION TAG SEQADV 6B0O MET A 320 UNP P19544 EXPRESSION TAG SEQADV 6B0O HIS D 319 UNP P19544 EXPRESSION TAG SEQADV 6B0O MET D 320 UNP P19544 EXPRESSION TAG SEQRES 1 A 119 HIS MET ARG PRO PHE MET CYS ALA TYR PRO GLY CYS ASN SEQRES 2 A 119 LYS ARG TYR PHE LYS LEU SER HIS LEU GLN MET HIS SER SEQRES 3 A 119 ARG LYS HIS THR GLY GLU LYS PRO TYR GLN CYS ASP PHE SEQRES 4 A 119 LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP GLN LEU SEQRES 5 A 119 LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS PRO PHE SEQRES 6 A 119 GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SER ASP SEQRES 7 A 119 HIS LEU LYS THR HIS THR ARG THR HIS THR GLY GLU LYS SEQRES 8 A 119 PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE SEQRES 9 A 119 ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS SEQRES 10 A 119 GLN ARG SEQRES 1 B 13 DA DG DC DG DT DG DG DG DA DG DT DG DT SEQRES 1 C 13 DT DA DC DA DC DT DC DC DC DA DC DG DC SEQRES 1 D 119 HIS MET ARG PRO PHE MET CYS ALA TYR PRO GLY CYS ASN SEQRES 2 D 119 LYS ARG TYR PHE LYS LEU SER HIS LEU GLN MET HIS SER SEQRES 3 D 119 ARG LYS HIS THR GLY GLU LYS PRO TYR GLN CYS ASP PHE SEQRES 4 D 119 LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP GLN LEU SEQRES 5 D 119 LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS PRO PHE SEQRES 6 D 119 GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SER ASP SEQRES 7 D 119 HIS LEU LYS THR HIS THR ARG THR HIS THR GLY GLU LYS SEQRES 8 D 119 PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE SEQRES 9 D 119 ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS SEQRES 10 D 119 GLN ARG SEQRES 1 E 13 DA DG DC DG DT DG DG DG DA DG DT DG DT SEQRES 1 F 13 DT DA DC DA DC DT DC DC DC DA DC DG DC HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET EDO A 505 4 HET EDO A 506 4 HET ZN D 501 1 HET ZN D 502 1 HET ZN D 503 1 HET ZN D 504 1 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 ZN 8(ZN 2+) FORMUL 11 EDO 2(C2 H6 O2) FORMUL 17 HOH *362(H2 O) HELIX 1 AA1 LYS A 336 GLY A 349 1 14 HELIX 2 AA2 ARG A 366 GLN A 374 1 9 HELIX 3 AA3 GLN A 374 GLY A 379 1 6 HELIX 4 AA4 ARG A 394 GLY A 407 1 14 HELIX 5 AA5 ARG A 424 ASN A 433 1 10 HELIX 6 AA6 LYS D 336 ARG D 345 1 10 HELIX 7 AA7 LYS D 346 THR D 348 5 3 HELIX 8 AA8 ARG D 366 GLY D 379 1 14 HELIX 9 AA9 ARG D 394 GLY D 407 1 14 HELIX 10 AB1 ARG D 424 HIS D 435 1 12 SHEET 1 AA1 2 PHE A 323 MET A 324 0 SHEET 2 AA1 2 ARG A 333 TYR A 334 -1 O TYR A 334 N PHE A 323 SHEET 1 AA2 2 TYR A 353 GLN A 354 0 SHEET 2 AA2 2 ARG A 363 PHE A 364 -1 O PHE A 364 N TYR A 353 SHEET 1 AA3 2 PHE A 383 GLN A 384 0 SHEET 2 AA3 2 LYS A 391 PHE A 392 -1 O PHE A 392 N PHE A 383 SHEET 1 AA4 2 PHE A 411 SER A 412 0 SHEET 2 AA4 2 LYS A 421 PHE A 422 -1 O PHE A 422 N PHE A 411 SHEET 1 AA5 2 PHE D 323 MET D 324 0 SHEET 2 AA5 2 ARG D 333 TYR D 334 -1 O TYR D 334 N PHE D 323 SHEET 1 AA6 2 TYR D 353 GLN D 354 0 SHEET 2 AA6 2 ARG D 363 PHE D 364 -1 O PHE D 364 N TYR D 353 SHEET 1 AA7 2 PHE D 383 GLN D 384 0 SHEET 2 AA7 2 LYS D 391 PHE D 392 -1 O PHE D 392 N PHE D 383 SHEET 1 AA8 2 PHE D 411 SER D 412 0 SHEET 2 AA8 2 LYS D 421 PHE D 422 -1 O PHE D 422 N PHE D 411 LINK SG CYS A 325 ZN ZN A 504 1555 1555 2.33 LINK SG CYS A 330 ZN ZN A 504 1555 1555 2.35 LINK NE2 HIS A 343 ZN ZN A 504 1555 1555 2.10 LINK NE2 HIS A 347 ZN ZN A 504 1555 1555 2.05 LINK SG CYS A 355 ZN ZN A 501 1555 1555 2.29 LINK SG CYS A 360 ZN ZN A 501 1555 1555 2.32 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 2.05 LINK NE2 HIS A 377 ZN ZN A 501 1555 1555 2.04 LINK SG CYS A 385 ZN ZN A 502 1555 1555 2.34 LINK SG CYS A 388 ZN ZN A 502 1555 1555 2.32 LINK NE2 HIS A 401 ZN ZN A 502 1555 1555 2.14 LINK NE2 HIS A 405 ZN ZN A 502 1555 1555 2.09 LINK SG CYS A 413 ZN ZN A 503 1555 1555 2.30 LINK SG CYS A 418 ZN ZN A 503 1555 1555 2.39 LINK NE2 HIS A 431 ZN ZN A 503 1555 1555 2.07 LINK NE2 HIS A 435 ZN ZN A 503 1555 1555 2.08 LINK SG CYS D 325 ZN ZN D 504 1555 1555 2.36 LINK SG CYS D 330 ZN ZN D 504 1555 1555 2.30 LINK NE2 HIS D 343 ZN ZN D 504 1555 1555 2.11 LINK NE2 HIS D 347 ZN ZN D 504 1555 1555 2.11 LINK SG CYS D 355 ZN ZN D 501 1555 1555 2.32 LINK SG CYS D 360 ZN ZN D 501 1555 1555 2.30 LINK NE2 HIS D 373 ZN ZN D 501 1555 1555 2.11 LINK NE2 HIS D 377 ZN ZN D 501 1555 1555 2.06 LINK SG CYS D 385 ZN ZN D 502 1555 1555 2.33 LINK SG CYS D 388 ZN ZN D 502 1555 1555 2.31 LINK NE2 HIS D 401 ZN ZN D 502 1555 1555 2.11 LINK NE2 HIS D 405 ZN ZN D 502 1555 1555 2.10 LINK SG CYS D 413 ZN ZN D 503 1555 1555 2.40 LINK SG CYS D 418 ZN ZN D 503 1555 1555 2.35 LINK NE2 HIS D 431 ZN ZN D 503 1555 1555 2.11 LINK NE2 HIS D 435 ZN ZN D 503 1555 1555 2.14 SITE 1 AC1 4 CYS A 355 CYS A 360 HIS A 373 HIS A 377 SITE 1 AC2 4 CYS A 385 CYS A 388 HIS A 401 HIS A 405 SITE 1 AC3 4 CYS A 413 CYS A 418 HIS A 431 HIS A 435 SITE 1 AC4 4 CYS A 325 CYS A 330 HIS A 343 HIS A 347 SITE 1 AC5 5 ASP A 368 GLN A 369 ARG A 372 DA B 9 SITE 2 AC5 5 DC C 5 SITE 1 AC6 6 GLY A 379 VAL A 380 LYS A 381 HOH A 651 SITE 2 AC6 6 DC F 3 DA F 4 SITE 1 AC7 4 CYS D 355 CYS D 360 HIS D 373 HIS D 377 SITE 1 AC8 4 CYS D 385 CYS D 388 HIS D 401 HIS D 405 SITE 1 AC9 4 CYS D 413 CYS D 418 HIS D 431 HIS D 435 SITE 1 AD1 4 CYS D 325 CYS D 330 HIS D 343 HIS D 347 CRYST1 36.927 42.657 71.821 88.28 77.71 85.81 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027080 -0.001982 -0.005873 0.00000 SCALE2 0.000000 0.023505 -0.000350 0.00000 SCALE3 0.000000 0.000000 0.014252 0.00000