PDB Short entry for 6BJH HEADER RNA BINDING PROTEIN 06-NOV-17 6BJH TITLE CIRV P19 MUTANT T111S IN COMPLEX WITH SIRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA SILENCING SUPPRESSOR P19; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 19 KDA SYMPTOM SEVERITY MODULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'- COMPND 9 R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)- COMPND 10 3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RNA (5'- COMPND 15 R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNATION ITALIAN RINGSPOT VIRUS; SOURCE 3 ORGANISM_COMMON: CIRV; SOURCE 4 ORGANISM_TAXID: 39443; SOURCE 5 GENE: ORF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 11 ORGANISM_TAXID: 7049; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 15 ORGANISM_TAXID: 7049 KEYWDS VIRAL SUPPRESSOR, RNA SILENCING SIRNA, HIGH AFFINITY FOR HUMAN MIRNA- KEYWDS 2 122, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.V.FOSS,N.T.SCHIRLE,I.J.MACRAE,J.P.PEZACKI REVDAT 3 04-OCT-23 6BJH 1 REMARK REVDAT 2 03-JUL-19 6BJH 1 JRNL REVDAT 1 16-JAN-19 6BJH 0 JRNL AUTH D.V.FOSS,N.T.SCHIRLE,I.J.MACRAE,J.P.PEZACKI JRNL TITL STRUCTURAL INSIGHTS INTO INTERACTIONS BETWEEN VIRAL JRNL TITL 2 SUPPRESSOR OF RNA SILENCING PROTEIN P19 MUTANTS AND SMALL JRNL TITL 3 RNAS. JRNL REF FEBS OPEN BIO V. 9 1042 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 31021526 JRNL DOI 10.1002/2211-5463.12644 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.CHENG,D.C.DANIELSON,N.NASHERI,R.SINGARAVELU,J.P.PEZACKI REMARK 1 TITL ENHANCED SPECIFICITY OF THE VIRAL SUPPRESSOR OF RNA REMARK 1 TITL 2 SILENCING PROTEIN P19 TOWARD SEQUESTERING OF HUMAN REMARK 1 TITL 3 MICRORNA-122. REMARK 1 REF BIOCHEMISTRY V. 50 7745 2011 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 21819044 REMARK 1 DOI 10.1021/BI2008273 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 3 NUMBER OF REFLECTIONS : 9153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0403 - 3.7097 0.82 3091 180 0.1994 0.2263 REMARK 3 2 3.7097 - 2.9451 0.76 2876 146 0.2244 0.3258 REMARK 3 3 2.9451 - 2.5729 0.73 2717 143 0.2931 0.3586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3323 REMARK 3 ANGLE : 0.429 4687 REMARK 3 CHIRALITY : 0.030 530 REMARK 3 PLANARITY : 0.002 455 REMARK 3 DIHEDRAL : 8.742 1858 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4771 49.7613 76.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.3207 T22: 0.2838 REMARK 3 T33: 0.1562 T12: 0.0147 REMARK 3 T13: 0.0420 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 2.4606 L22: 3.3137 REMARK 3 L33: 3.5656 L12: -0.7041 REMARK 3 L13: 1.1625 L23: -1.2259 REMARK 3 S TENSOR REMARK 3 S11: 0.2795 S12: -0.1572 S13: -0.1520 REMARK 3 S21: 0.1825 S22: 0.2984 S23: 0.4725 REMARK 3 S31: 0.4482 S32: -0.4460 S33: -0.2456 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7250 72.5284 70.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.9255 T22: 0.4630 REMARK 3 T33: 0.9743 T12: 0.1746 REMARK 3 T13: 0.1211 T23: -0.1835 REMARK 3 L TENSOR REMARK 3 L11: 1.6738 L22: 1.1874 REMARK 3 L33: 0.7800 L12: 1.2184 REMARK 3 L13: 0.8168 L23: 0.4579 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: -0.2129 S13: 0.7727 REMARK 3 S21: 0.0136 S22: 0.1307 S23: 0.5954 REMARK 3 S31: -0.4880 S32: -0.0246 S33: -0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8515 51.5525 75.1993 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1620 REMARK 3 T33: 0.0810 T12: -0.0394 REMARK 3 T13: 0.0570 T23: 0.1070 REMARK 3 L TENSOR REMARK 3 L11: 1.3433 L22: 1.2431 REMARK 3 L33: 1.4782 L12: -0.3218 REMARK 3 L13: -0.2096 L23: -0.4979 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.2153 S13: 0.0812 REMARK 3 S21: 0.3290 S22: -0.1151 S23: -0.1151 REMARK 3 S31: -0.0464 S32: 0.1717 S33: 0.1111 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4092 47.6064 66.7314 REMARK 3 T TENSOR REMARK 3 T11: 0.2518 T22: 0.1920 REMARK 3 T33: 0.1344 T12: -0.0713 REMARK 3 T13: 0.0533 T23: 0.1174 REMARK 3 L TENSOR REMARK 3 L11: 0.9323 L22: 2.0635 REMARK 3 L33: 1.4906 L12: 0.1496 REMARK 3 L13: -0.0044 L23: -0.9746 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.2422 S13: -0.2340 REMARK 3 S21: 0.1904 S22: -0.1812 S23: -0.1983 REMARK 3 S31: 0.0499 S32: 0.2625 S33: 0.1086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1709 50.9770 38.9036 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 0.3183 REMARK 3 T33: 0.1657 T12: -0.0358 REMARK 3 T13: 0.0542 T23: 0.1478 REMARK 3 L TENSOR REMARK 3 L11: 0.1666 L22: 0.0010 REMARK 3 L33: 0.4524 L12: 0.0121 REMARK 3 L13: 0.2739 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.2111 S13: 0.1350 REMARK 3 S21: -0.1851 S22: -0.0019 S23: -0.0358 REMARK 3 S31: -0.1225 S32: -0.0395 S33: 0.1526 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1601 40.2305 47.6355 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2486 REMARK 3 T33: 0.1608 T12: -0.0917 REMARK 3 T13: 0.0547 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 1.6632 L22: 0.0749 REMARK 3 L33: 1.6779 L12: -0.1021 REMARK 3 L13: 0.8508 L23: 0.2399 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: -0.2395 S13: -0.3463 REMARK 3 S21: 0.1198 S22: 0.1788 S23: 0.1473 REMARK 3 S31: 0.3834 S32: -0.0668 S33: 0.3924 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4876 51.9938 49.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.2638 REMARK 3 T33: 0.3334 T12: -0.0864 REMARK 3 T13: -0.0944 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.7779 L22: 1.1999 REMARK 3 L33: 1.1971 L12: -0.7625 REMARK 3 L13: 0.9181 L23: -0.0709 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.0930 S13: -0.2981 REMARK 3 S21: -0.0269 S22: 0.0470 S23: -0.0861 REMARK 3 S31: -0.0798 S32: 0.1408 S33: 0.0267 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9407 55.8966 53.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1016 REMARK 3 T33: 0.2370 T12: 0.0291 REMARK 3 T13: -0.0710 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 0.7220 L22: 0.2096 REMARK 3 L33: 1.2417 L12: 0.1650 REMARK 3 L13: -0.2423 L23: 0.3920 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.0290 S13: 0.1319 REMARK 3 S21: 0.0302 S22: 0.0662 S23: 0.0302 REMARK 3 S31: -0.2366 S32: -0.1752 S33: 0.0860 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3543 52.8726 60.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.4749 REMARK 3 T33: 0.1966 T12: -0.1865 REMARK 3 T13: -0.0702 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 3.3860 L22: 1.3323 REMARK 3 L33: 0.8456 L12: -0.4581 REMARK 3 L13: 1.1178 L23: 0.4206 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: -0.5036 S13: -0.1328 REMARK 3 S21: 0.3246 S22: 0.0054 S23: -0.3273 REMARK 3 S31: 0.0641 S32: 0.0098 S33: -0.0330 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0510 38.9850 42.9517 REMARK 3 T TENSOR REMARK 3 T11: 0.2906 T22: 0.3183 REMARK 3 T33: 0.3277 T12: 0.0051 REMARK 3 T13: 0.0077 T23: 0.1587 REMARK 3 L TENSOR REMARK 3 L11: 5.7967 L22: 9.2448 REMARK 3 L33: 3.6078 L12: -5.8093 REMARK 3 L13: 2.8117 L23: -0.0462 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.3478 S13: -0.7319 REMARK 3 S21: -0.0351 S22: -0.4421 S23: 0.1998 REMARK 3 S31: 0.1961 S32: 0.3644 S33: 0.2534 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9241 51.7110 56.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.2305 REMARK 3 T33: 0.4533 T12: 0.0295 REMARK 3 T13: -0.0423 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6158 L22: 4.7018 REMARK 3 L33: 2.3043 L12: -0.5737 REMARK 3 L13: -0.7184 L23: -1.8020 REMARK 3 S TENSOR REMARK 3 S11: -0.1365 S12: 0.3704 S13: -0.0092 REMARK 3 S21: 0.0290 S22: 0.2355 S23: 0.5475 REMARK 3 S31: 0.0380 S32: -0.4058 S33: -0.0215 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9714 67.3164 62.9078 REMARK 3 T TENSOR REMARK 3 T11: 0.8244 T22: 0.6839 REMARK 3 T33: 0.8342 T12: 0.1142 REMARK 3 T13: 0.4112 T23: 0.1180 REMARK 3 L TENSOR REMARK 3 L11: 2.9632 L22: 4.3500 REMARK 3 L33: 4.1739 L12: 1.2071 REMARK 3 L13: 2.0139 L23: 4.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.6796 S12: -0.2854 S13: 0.7043 REMARK 3 S21: 1.0910 S22: -0.4058 S23: 0.8944 REMARK 3 S31: -1.0697 S32: -2.1556 S33: -0.1913 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0015 59.9610 65.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.3855 T22: 0.2562 REMARK 3 T33: 0.6511 T12: -0.0056 REMARK 3 T13: -0.1000 T23: -0.1259 REMARK 3 L TENSOR REMARK 3 L11: 6.2603 L22: 9.5615 REMARK 3 L33: 4.8988 L12: 2.8264 REMARK 3 L13: -4.7932 L23: -4.6320 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: 0.7250 S13: -0.5949 REMARK 3 S21: -0.3357 S22: 0.1740 S23: 0.0120 REMARK 3 S31: 0.7204 S32: -0.4455 S33: -0.2925 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2229 55.2473 50.2084 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.6276 REMARK 3 T33: 0.3727 T12: 0.0689 REMARK 3 T13: -0.1344 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 4.0312 L22: 3.5355 REMARK 3 L33: 2.2161 L12: -1.1729 REMARK 3 L13: 2.9765 L23: -0.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.4110 S12: 0.5877 S13: -0.4506 REMARK 3 S21: -0.4726 S22: -0.4282 S23: 0.7686 REMARK 3 S31: 0.1059 S32: -1.1006 S33: -0.0232 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2353 34.7977 46.9169 REMARK 3 T TENSOR REMARK 3 T11: 0.4846 T22: 0.3465 REMARK 3 T33: 0.5577 T12: -0.0209 REMARK 3 T13: -0.0715 T23: -0.2364 REMARK 3 L TENSOR REMARK 3 L11: 1.3830 L22: 0.5435 REMARK 3 L33: 3.0054 L12: 0.7954 REMARK 3 L13: 1.9748 L23: 1.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.4678 S13: -0.4709 REMARK 3 S21: -0.0690 S22: 0.0428 S23: -0.3046 REMARK 3 S31: 0.5461 S32: -0.0352 S33: -0.1566 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 34.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1RPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-12% PEG 1500, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, 10-40 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 51 REMARK 465 ASN A 52 REMARK 465 THR A 148 REMARK 465 PRO A 149 REMARK 465 VAL A 150 REMARK 465 GLU A 151 REMARK 465 VAL A 152 REMARK 465 GLU A 153 REMARK 465 SER A 154 REMARK 465 ASN A 155 REMARK 465 VAL A 156 REMARK 465 SER A 157 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 CYS A 160 REMARK 465 PRO A 161 REMARK 465 GLU A 162 REMARK 465 GLY A 163 REMARK 465 ILE A 164 REMARK 465 GLU A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 150 REMARK 465 GLU B 151 REMARK 465 VAL B 152 REMARK 465 GLU B 153 REMARK 465 SER B 154 REMARK 465 ASN B 155 REMARK 465 VAL B 156 REMARK 465 SER B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 465 CYS B 160 REMARK 465 PRO B 161 REMARK 465 GLU B 162 REMARK 465 GLY B 163 REMARK 465 ILE B 164 REMARK 465 GLU B 165 REMARK 465 THR B 166 REMARK 465 PHE B 167 REMARK 465 LYS B 168 REMARK 465 LYS B 169 REMARK 465 GLU B 170 REMARK 465 SER B 171 REMARK 465 GLU B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 31 O SER A 89 1.55 REMARK 500 NH1 ARG B 117 O LEU B 147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE A 26 NH1 ARG B 101 1556 2.06 REMARK 500 O HOH B 248 O HOH D 117 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U C 1 P U C 1 OP3 -0.126 REMARK 500 C D 1 P C D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 78.97 -119.49 REMARK 500 TRP A 19 -71.04 -91.22 REMARK 500 ASN A 46 86.25 -55.04 REMARK 500 THR A 49 115.89 -39.96 REMARK 500 ALA B 4 -72.66 -67.51 REMARK 500 GLN B 6 -3.72 73.62 REMARK 500 SER B 38 170.19 -56.39 REMARK 500 ASN B 46 39.53 -95.11 REMARK 500 LEU B 147 104.15 -52.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 234 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 249 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH B 250 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH B 251 DISTANCE = 10.71 ANGSTROMS REMARK 525 HOH C 127 DISTANCE = 6.25 ANGSTROMS DBREF 6BJH A 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJH B 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJH C 1 21 PDB 6BJH 6BJH 1 21 DBREF 6BJH D 1 21 PDB 6BJH 6BJH 1 21 SEQADV 6BJH SER A 111 UNP Q66104 THR 111 ENGINEERED MUTATION SEQADV 6BJH SER B 111 UNP Q66104 THR 111 ENGINEERED MUTATION SEQRES 1 A 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 A 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 A 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 A 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 A 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 A 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 A 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 A 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 A 172 ALA ASN GLN VAL GLY CYS SER TYR SER ILE ARG PHE ARG SEQRES 10 A 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 A 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 A 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 A 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 A 172 GLU SER GLU SEQRES 1 B 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 B 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 B 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 B 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 B 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 B 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 B 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 B 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 B 172 ALA ASN GLN VAL GLY CYS SER TYR SER ILE ARG PHE ARG SEQRES 10 B 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 B 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 B 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 B 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 B 172 GLU SER GLU SEQRES 1 C 21 U C G A A G U A U U C C G SEQRES 2 C 21 C G U A C G U U SEQRES 1 D 21 C G U A C G C G G A A U A SEQRES 2 D 21 C U U C G A U U FORMUL 5 HOH *129(H2 O) HELIX 1 AA1 THR A 10 GLU A 17 1 8 HELIX 2 AA2 THR A 40 LEU A 44 5 5 HELIX 3 AA3 THR A 79 GLY A 88 1 10 HELIX 4 AA4 THR A 91 SER A 100 1 10 HELIX 5 AA5 THR A 129 LEU A 145 1 17 HELIX 6 AA6 GLY B 7 ARG B 18 1 12 HELIX 7 AA7 TRP B 19 GLY B 24 5 6 HELIX 8 AA8 SER B 38 LEU B 44 1 7 HELIX 9 AA9 TYR B 45 ASP B 47 5 3 HELIX 10 AB1 THR B 79 LEU B 87 1 9 HELIX 11 AB2 GLY B 88 TRP B 90 5 3 HELIX 12 AB3 THR B 91 ARG B 101 1 11 HELIX 13 AB4 THR B 129 LEU B 147 1 19 SHEET 1 AA1 8 VAL A 68 ARG A 75 0 SHEET 2 AA1 8 GLY A 58 PHE A 65 -1 N TRP A 63 O PHE A 70 SHEET 3 AA1 8 GLY A 109 ARG A 115 -1 O SER A 111 N GLY A 64 SHEET 4 AA1 8 VAL A 119 GLY A 126 -1 O ILE A 123 N TYR A 112 SHEET 5 AA1 8 VAL B 119 GLY B 126 -1 O SER B 124 N SER A 120 SHEET 6 AA1 8 GLY B 109 PHE B 116 -1 N CYS B 110 O GLY B 125 SHEET 7 AA1 8 GLY B 58 PHE B 65 -1 N GLY B 64 O SER B 111 SHEET 8 AA1 8 VAL B 68 ARG B 75 -1 O PHE B 70 N TRP B 63 CISPEP 1 ASN A 8 ASP A 9 0 0.11 CISPEP 2 GLY A 21 GLY A 22 0 0.69 CISPEP 3 SER A 23 GLY A 24 0 -1.75 CISPEP 4 GLU B 48 THR B 49 0 -6.86 CISPEP 5 ASP B 54 ASN B 55 0 -2.83 CRYST1 45.788 46.219 54.181 109.85 112.11 95.52 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021840 0.002109 0.010659 0.00000 SCALE2 0.000000 0.021737 0.009699 0.00000 SCALE3 0.000000 0.000000 0.021815 0.00000