PDB Short entry for 6BJO HEADER PEPTIDE BINDING PROTEIN 06-NOV-17 6BJO TITLE PICK1 PDZ DOMAIN IN COMPLEX WITH THE SMALL MOLECULE INHIBITOR BIO124. CAVEAT 6BJO DUY A 201 HAS WRONG CHIRALITY AT ATOM C15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRKCA-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN INTERACTING WITH C KINASE 1,PROTEIN KINASE C-ALPHA- COMPND 5 BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PICK1, PRKCABP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PICK1 PDZ DOMAIN INHIBITOR COMPLEX LOCK AND CHOP, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MARCOTTE REVDAT 2 28-FEB-18 6BJO 1 JRNL REVDAT 1 10-JAN-18 6BJO 0 JRNL AUTH D.J.MARCOTTE,J.C.HUS,C.C.BANOS,C.WILDES,R.ARDUINI, JRNL AUTH 2 C.BERGERON,C.A.HESSION,D.P.BAKER,E.LIN,K.M.GUCKIAN, JRNL AUTH 3 A.W.DUNAH,L.F.SILVIAN JRNL TITL LOCK AND CHOP: A NOVEL METHOD FOR THE GENERATION OF A PICK1 JRNL TITL 2 PDZ DOMAIN AND PIPERIDINE-BASED INHIBITOR CO-CRYSTAL JRNL TITL 3 STRUCTURE. JRNL REF PROTEIN SCI. V. 27 672 2018 JRNL REFN ESSN 1469-896X JRNL PMID 29280296 JRNL DOI 10.1002/PRO.3361 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 23001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.0980 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.1200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.016 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1341 ; 0.038 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1295 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1827 ; 3.818 ; 2.061 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3006 ; 1.705 ; 3.048 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 8.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;34.441 ;26.744 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;16.663 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;16.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.239 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1436 ; 0.022 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 218 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LY REMARK 4 REMARK 4 6BJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH 5.5 25% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.91533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.95767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 LYS A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 ILE A 16 REMARK 465 PRO A 17 REMARK 465 THR A 18 REMARK 465 GLN A 105 REMARK 465 GLN A 106 REMARK 465 SER A 107 REMARK 465 ALA A 108 REMARK 465 VAL A 109 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 ASP B 6 REMARK 465 TYR B 7 REMARK 465 ASP B 8 REMARK 465 ILE B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 LYS B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 ILE B 16 REMARK 465 PRO B 17 REMARK 465 THR B 18 REMARK 465 GLN B 42 REMARK 465 GLN B 105 REMARK 465 GLN B 106 REMARK 465 SER B 107 REMARK 465 ALA B 108 REMARK 465 VAL B 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 42 CG CD OE1 NE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 329 O HOH A 356 1.17 REMARK 500 O HOH A 308 O HOH A 312 1.44 REMARK 500 O HOH A 355 O HOH A 371 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 344 O HOH B 308 1665 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 20 C PRO A 20 O 0.136 REMARK 500 THR A 24 C THR A 24 O 0.126 REMARK 500 TYR A 43 CB TYR A 43 CG 0.119 REMARK 500 TYR A 48 CG TYR A 48 CD1 0.079 REMARK 500 THR A 71 C THR A 71 O 0.126 REMARK 500 SER A 77 CB SER A 77 OG 0.087 REMARK 500 GLY B 38 N GLY B 38 CA 0.092 REMARK 500 VAL B 50 C VAL B 50 O 0.160 REMARK 500 PHE B 53 CA PHE B 53 CB -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 28 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 48 CG - CD1 - CE1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 LEU B 25 CB - CG - CD1 ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP B 28 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 43 -4.09 84.68 REMARK 500 ALA A 66 120.68 -38.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 33 -10.01 REMARK 500 TYR A 43 -10.33 REMARK 500 PRO A 57 -11.80 REMARK 500 LEU A 60 -12.03 REMARK 500 ASN A 74 10.09 REMARK 500 GLU A 92 -12.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUY B 201 DBREF 6BJO A 1 105 UNP Q9NRD5 PICK1_HUMAN 1 105 DBREF 6BJO B 1 105 UNP Q9NRD5 PICK1_HUMAN 1 105 SEQADV 6BJO MET A -15 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLY A -14 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -13 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -12 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -11 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -10 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -9 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -8 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -7 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS A -6 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO LEU A -5 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO VAL A -4 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO PRO A -3 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO ARG A -2 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLY A -1 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO SER A 0 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLN A 106 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO SER A 107 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO ALA A 108 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO VAL A 109 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO MET B -15 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLY B -14 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -13 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -12 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -11 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -10 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -9 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -8 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -7 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO HIS B -6 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO LEU B -5 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO VAL B -4 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO PRO B -3 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO ARG B -2 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLY B -1 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO SER B 0 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO GLN B 106 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO SER B 107 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO ALA B 108 UNP Q9NRD5 EXPRESSION TAG SEQADV 6BJO VAL B 109 UNP Q9NRD5 EXPRESSION TAG SEQRES 1 A 125 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS LEU VAL PRO SEQRES 2 A 125 ARG GLY SER MET PHE ALA ASP LEU ASP TYR ASP ILE GLU SEQRES 3 A 125 GLU ASP LYS LEU GLY ILE PRO THR VAL PRO GLY LYS VAL SEQRES 4 A 125 THR LEU GLN LYS ASP ALA GLN ASN LEU ILE GLY ILE SER SEQRES 5 A 125 ILE GLY GLY GLY ALA GLN TYR CYS PRO CYS LEU TYR ILE SEQRES 6 A 125 VAL GLN VAL PHE ASP ASN THR PRO ALA ALA LEU ASP GLY SEQRES 7 A 125 THR VAL ALA ALA GLY ASP GLU ILE THR GLY VAL ASN GLY SEQRES 8 A 125 ARG SER ILE LYS GLY LYS THR LYS VAL GLU VAL ALA LYS SEQRES 9 A 125 MET ILE GLN GLU VAL LYS GLY GLU VAL THR ILE HIS TYR SEQRES 10 A 125 ASN LYS LEU GLN GLN SER ALA VAL SEQRES 1 B 125 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS LEU VAL PRO SEQRES 2 B 125 ARG GLY SER MET PHE ALA ASP LEU ASP TYR ASP ILE GLU SEQRES 3 B 125 GLU ASP LYS LEU GLY ILE PRO THR VAL PRO GLY LYS VAL SEQRES 4 B 125 THR LEU GLN LYS ASP ALA GLN ASN LEU ILE GLY ILE SER SEQRES 5 B 125 ILE GLY GLY GLY ALA GLN TYR CYS PRO CYS LEU TYR ILE SEQRES 6 B 125 VAL GLN VAL PHE ASP ASN THR PRO ALA ALA LEU ASP GLY SEQRES 7 B 125 THR VAL ALA ALA GLY ASP GLU ILE THR GLY VAL ASN GLY SEQRES 8 B 125 ARG SER ILE LYS GLY LYS THR LYS VAL GLU VAL ALA LYS SEQRES 9 B 125 MET ILE GLN GLU VAL LYS GLY GLU VAL THR ILE HIS TYR SEQRES 10 B 125 ASN LYS LEU GLN GLN SER ALA VAL HET DUY A 201 39 HET DUY B 201 39 HETNAM DUY (2S)-({4-(4-BROMOPHENYL)-1-[1-(TERT-BUTOXYCARBONYL)-L- HETNAM 2 DUY PROLYL]PIPERIDINE-4-CARBONYL}AMINO)(CYCLOPENTYL)ACETIC HETNAM 3 DUY ACID FORMUL 3 DUY 2(C29 H40 BR N3 O6) FORMUL 5 HOH *160(H2 O) HELIX 1 AA1 THR A 56 GLY A 62 1 7 HELIX 2 AA2 THR A 82 GLU A 92 1 11 HELIX 3 AA3 THR B 56 GLY B 62 1 7 HELIX 4 AA4 THR B 82 GLU B 92 1 11 SHEET 1 AA1 5 PRO A 20 GLN A 26 0 SHEET 2 AA1 5 GLU A 96 ASN A 102 -1 O ILE A 99 N VAL A 23 SHEET 3 AA1 5 GLU A 69 VAL A 73 -1 N GLY A 72 O HIS A 100 SHEET 4 AA1 5 CYS A 44 VAL A 52 -1 N LEU A 47 O ILE A 70 SHEET 5 AA1 5 ILE A 35 ALA A 41 -1 N SER A 36 O VAL A 50 SHEET 1 AA2 4 PRO A 20 GLN A 26 0 SHEET 2 AA2 4 GLU A 96 ASN A 102 -1 O ILE A 99 N VAL A 23 SHEET 3 AA2 4 GLU A 69 VAL A 73 -1 N GLY A 72 O HIS A 100 SHEET 4 AA2 4 ARG A 76 SER A 77 -1 O ARG A 76 N VAL A 73 SHEET 1 AA3 5 PRO B 20 GLN B 26 0 SHEET 2 AA3 5 GLU B 96 ASN B 102 -1 O VAL B 97 N LEU B 25 SHEET 3 AA3 5 GLU B 69 VAL B 73 -1 N THR B 71 O HIS B 100 SHEET 4 AA3 5 LEU B 47 VAL B 52 -1 N LEU B 47 O ILE B 70 SHEET 5 AA3 5 ILE B 35 GLY B 39 -1 N GLY B 38 O TYR B 48 SHEET 1 AA4 4 PRO B 20 GLN B 26 0 SHEET 2 AA4 4 GLU B 96 ASN B 102 -1 O VAL B 97 N LEU B 25 SHEET 3 AA4 4 GLU B 69 VAL B 73 -1 N THR B 71 O HIS B 100 SHEET 4 AA4 4 ARG B 76 SER B 77 -1 O ARG B 76 N VAL B 73 SSBOND 1 CYS A 44 CYS B 46 1555 1555 1.93 SSBOND 2 CYS A 46 CYS B 44 1555 1555 1.94 SITE 1 AC1 10 LEU A 32 ILE A 33 GLY A 34 ILE A 35 SITE 2 AC1 10 SER A 36 PHE A 53 ALA A 87 GLN A 91 SITE 3 AC1 10 HOH A 323 HOH A 342 SITE 1 AC2 8 LEU B 32 ILE B 33 GLY B 34 ILE B 35 SITE 2 AC2 8 PHE B 53 LYS B 83 GLN B 91 HOH B 313 CRYST1 54.011 54.011 77.873 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018515 0.010689 0.000000 0.00000 SCALE2 0.000000 0.021379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012841 0.00000